Wall clock time and date at job start Mon Mar 30 2020 02:07:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47133 * 2 1 4 4 H 1.09006 * 109.47253 * 179.31961 * 3 2 1 5 5 C 1.50693 * 109.47431 * 59.31624 * 3 2 1 6 6 H 1.08009 * 119.99934 * 244.33159 * 5 3 2 7 7 C 1.37872 * 120.00220 * 64.33126 * 5 3 2 8 8 N 1.31517 * 119.99810 * 8.21954 * 7 5 3 9 9 Si 1.86801 * 120.00307 * 187.94928 * 7 5 3 10 10 H 1.48501 * 109.47157 * 89.99787 * 9 7 5 11 11 H 1.48501 * 109.47345 * 210.00200 * 9 7 5 12 12 H 1.48501 * 109.47073 * 329.99915 * 9 7 5 13 13 C 1.53005 * 109.47150 * 299.31449 * 3 2 1 14 14 H 1.09004 * 110.85422 * 60.79495 * 13 3 2 15 15 C 1.54484 * 110.97054 * 184.58408 * 13 3 2 16 16 N 1.46762 * 105.46910 * 143.53587 * 15 13 3 17 17 C 1.34420 * 111.30594 * 342.98260 * 16 15 13 18 18 O 1.21276 * 124.94373 * 180.44696 * 17 16 15 19 19 C 1.51285 * 110.11367 * 0.40722 * 17 16 15 20 20 H 1.09000 * 109.46971 * 305.06742 * 1 2 3 21 21 H 1.09002 * 109.47460 * 65.06128 * 1 2 3 22 22 H 1.08997 * 109.47429 * 185.06438 * 1 2 3 23 23 H 1.09003 * 109.46977 * 239.99960 * 2 1 3 24 24 H 1.09001 * 109.47105 * 119.99550 * 2 1 3 25 25 H 0.97001 * 120.00071 * 3.53896 * 8 7 5 26 26 H 1.09001 * 110.24232 * 262.53344 * 15 13 3 27 27 H 1.08995 * 110.24450 * 24.53844 * 15 13 3 28 28 H 0.96996 * 124.34441 * 162.96518 * 16 15 13 29 29 H 1.08994 * 110.48783 * 257.57578 * 19 17 16 30 30 H 1.08998 * 110.48133 * 134.93017 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4425 0.0122 5 6 1.5239 2.1578 1.2218 6 1 0.8477 2.9930 1.1133 7 6 1.9149 1.7462 2.4782 8 7 2.8586 0.8395 2.6091 9 14 1.1096 2.4816 3.9948 10 1 -0.0758 1.6692 4.3691 11 1 2.0810 2.4866 5.1180 12 1 0.6833 3.8739 3.7030 13 6 1.5441 2.1588 -1.2578 14 1 0.4547 2.1841 -1.2860 15 6 2.1329 3.5840 -1.3508 16 7 2.3785 3.8136 -2.7794 17 6 2.3801 2.6583 -3.4666 18 8 2.5667 2.5607 -4.6609 19 6 2.1163 1.4974 -2.5331 20 1 -0.3633 0.5904 0.8411 21 1 -0.3634 0.4333 -0.9318 22 1 -0.3634 -1.0236 0.0907 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 3.3152 0.4980 1.8244 26 1 1.4181 4.3130 -0.9691 27 1 3.0675 3.6431 -0.7932 28 1 2.5211 4.6869 -3.1767 29 1 3.0437 0.9714 -2.3068 30 1 1.3865 0.8154 -2.9694 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260711302.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:10 Heat of formation + Delta-G solvation = -80.333070 kcal Electronic energy + Delta-G solvation = -12945.364054 eV Core-core repulsion = 10738.698060 eV Total energy + Delta-G solvation = -2206.665993 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.32415 -38.40252 -36.37759 -33.58280 -31.49335 -29.26422 -27.13362 -25.58022 -22.96078 -21.55091 -20.67603 -18.61475 -18.33344 -16.97165 -15.95541 -15.57292 -15.53760 -15.08533 -14.83451 -14.32438 -14.08198 -13.84405 -13.17209 -12.62451 -12.60652 -12.43229 -12.23071 -11.89585 -11.75574 -11.43068 -11.15167 -10.87618 -10.35230 -10.21823 -10.07856 -8.40356 -6.11269 1.52655 1.61695 1.66883 1.82728 2.46343 2.66998 3.36153 3.51456 3.75985 3.98137 4.26330 4.56466 4.59025 4.68091 4.71991 4.81967 4.94356 5.00548 5.16853 5.23297 5.46682 5.61455 5.73484 5.77990 5.82998 6.01626 6.26268 6.43053 6.82636 7.24492 7.64769 8.96914 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.048261 B = 0.010706 C = 0.009671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.042795 B = 2614.836314 C = 2894.469718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.117 4.117 3 C 0.044 3.956 4 H -0.004 1.004 5 C -0.581 4.581 6 H 0.053 0.947 7 C -0.025 4.025 8 N -0.943 5.943 9 Si 1.099 2.901 10 H -0.282 1.282 11 H -0.296 1.296 12 H -0.269 1.269 13 C -0.074 4.074 14 H 0.088 0.912 15 C 0.118 3.882 16 N -0.718 5.718 17 C 0.517 3.483 18 O -0.589 6.589 19 C -0.148 4.148 20 H 0.046 0.954 21 H 0.057 0.943 22 H 0.040 0.960 23 H 0.045 0.955 24 H 0.030 0.970 25 H 0.261 0.739 26 H 0.090 0.910 27 H 0.064 0.936 28 H 0.415 0.585 29 H 0.099 0.901 30 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.878 3.787 -4.950 7.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.155 4.155 3 C 0.026 3.974 4 H 0.014 0.986 5 C -0.619 4.619 6 H 0.071 0.929 7 C -0.224 4.224 8 N -0.581 5.581 9 Si 0.924 3.076 10 H -0.208 1.208 11 H -0.223 1.223 12 H -0.193 1.193 13 C -0.092 4.092 14 H 0.106 0.894 15 C -0.006 4.006 16 N -0.372 5.372 17 C 0.305 3.695 18 O -0.471 6.471 19 C -0.188 4.188 20 H 0.065 0.935 21 H 0.076 0.924 22 H 0.060 0.940 23 H 0.063 0.937 24 H 0.048 0.952 25 H 0.071 0.929 26 H 0.109 0.891 27 H 0.083 0.917 28 H 0.255 0.745 29 H 0.117 0.883 30 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -3.842 3.583 -3.843 6.510 hybrid contribution 0.435 0.262 -1.540 1.622 sum -3.407 3.845 -5.383 7.441 Atomic orbital electron populations 1.21568 0.95588 0.99843 1.01453 1.21511 0.96840 0.98447 0.98696 1.18789 0.93980 0.92387 0.92287 0.98594 1.22141 1.30016 1.17336 0.92396 0.92865 1.26731 0.95889 0.95773 1.04003 1.70861 1.23410 1.30207 1.33645 0.83148 0.75218 0.76138 0.73115 1.20815 1.22285 1.19336 1.22048 1.00449 0.93353 0.93396 0.89416 1.22089 1.01174 0.98174 0.79186 1.46279 1.71748 1.09071 1.10058 1.21249 0.74219 0.87007 0.87051 1.90670 1.53219 1.86988 1.16202 1.22447 1.03991 0.96841 0.95540 0.93484 0.92394 0.94043 0.93679 0.95155 0.92863 0.89122 0.91729 0.74534 0.88302 0.87523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.66 9.29 71.98 0.67 -3.99 16 2 C -0.12 -4.80 5.23 30.59 0.16 -4.64 16 3 C 0.04 1.88 1.05 -11.54 -0.01 1.87 16 4 H 0.00 -0.19 7.46 -2.38 -0.02 -0.21 16 5 C -0.58 -27.70 6.63 25.60 0.17 -27.53 16 6 H 0.05 2.47 7.72 -2.91 -0.02 2.45 16 7 C -0.03 -1.31 5.22 84.65 0.44 -0.86 16 8 N -0.94 -53.39 12.88 21.45 0.28 -53.11 16 9 Si 1.10 46.81 29.91 68.60 2.05 48.86 16 10 H -0.28 -11.62 7.11 99.48 0.71 -10.92 16 11 H -0.30 -13.03 7.11 99.48 0.71 -12.32 16 12 H -0.27 -10.43 7.11 99.48 0.71 -9.72 16 13 C -0.07 -2.49 2.22 -9.73 -0.02 -2.51 16 14 H 0.09 2.89 6.70 -2.38 -0.02 2.88 16 15 C 0.12 3.59 6.82 86.83 0.59 4.19 16 16 N -0.72 -20.38 6.24 -459.81 -2.87 -23.25 16 17 C 0.52 17.40 8.43 87.90 0.74 18.14 16 18 O -0.59 -23.64 18.03 -3.02 -0.05 -23.69 16 19 C -0.15 -4.69 5.42 30.59 0.17 -4.52 16 20 H 0.05 1.90 7.02 -2.39 -0.02 1.89 16 21 H 0.06 1.84 6.76 -2.39 -0.02 1.83 16 22 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 23 H 0.04 1.64 7.34 -2.39 -0.02 1.63 16 24 H 0.03 1.44 6.33 -2.39 -0.02 1.43 16 25 H 0.26 14.86 6.13 -92.71 -0.57 14.29 16 26 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 27 H 0.06 2.16 7.87 -2.39 -0.02 2.15 16 28 H 0.42 9.73 8.96 -92.71 -0.83 8.90 16 29 H 0.10 3.18 7.85 -2.39 -0.02 3.17 16 30 H 0.11 3.08 8.14 -2.39 -0.02 3.07 16 Total: -1.00 -59.53 243.26 2.81 -56.71 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: 0.50 Total: 14.35 kcal Atomic # 6 Polarization: -22.77 SS G_CDS: 2.91 Total: -19.87 kcal Atomic # 7 Polarization: -73.76 SS G_CDS: -2.59 Total: -76.36 kcal Atomic # 8 Polarization: -23.64 SS G_CDS: -0.05 Total: -23.69 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 2.05 Total: 48.86 kcal Total: -59.53 2.81 -56.71 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260711302.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.622 kcal (2) G-P(sol) polarization free energy of solvation -59.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds