Wall clock time and date at job start Mon Mar 30 2020 02:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47143 * 2 1 4 4 H 1.09002 * 109.46601 * 305.51340 * 3 2 1 5 5 C 1.50702 * 109.47102 * 65.50831 * 3 2 1 6 6 H 1.08006 * 119.99657 * 55.48132 * 5 3 2 7 7 C 1.37875 * 119.99975 * 235.48318 * 5 3 2 8 8 N 1.31512 * 120.00072 * 5.78165 * 7 5 3 9 9 Si 1.86798 * 119.99867 * 185.78743 * 7 5 3 10 10 H 1.48499 * 109.47310 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.47071 * 119.99854 * 9 7 5 12 12 H 1.48497 * 109.47153 * 239.99671 * 9 7 5 13 13 C 1.53001 * 109.46978 * 185.51148 * 3 2 1 14 14 H 1.08996 * 110.88717 * 296.18453 * 13 3 2 15 15 C 1.54482 * 110.96860 * 59.99876 * 13 3 2 16 16 N 1.46763 * 105.54786 * 143.49135 * 15 13 3 17 17 C 1.34565 * 111.21735 * 343.08903 * 16 15 13 18 18 O 1.21275 * 124.92036 * 180.34695 * 17 16 15 19 19 C 1.51285 * 110.13694 * 0.29217 * 17 16 15 20 20 H 1.09000 * 109.47278 * 294.40364 * 1 2 3 21 21 H 1.08999 * 109.47198 * 54.40853 * 1 2 3 22 22 H 1.09002 * 109.46742 * 174.40694 * 1 2 3 23 23 H 1.08994 * 109.47253 * 239.99328 * 2 1 3 24 24 H 1.09008 * 109.46723 * 119.99708 * 2 1 3 25 25 H 0.97004 * 119.99735 * 180.02562 * 8 7 5 26 26 H 1.08999 * 110.24577 * 262.52955 * 15 13 3 27 27 H 1.08997 * 110.24974 * 24.44423 * 15 13 3 28 28 H 0.96996 * 124.35195 * 163.02539 * 16 15 13 29 29 H 1.09000 * 110.48664 * 257.63983 * 19 17 16 30 30 H 1.09002 * 110.59772 * 135.05916 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5983 1.9840 -0.8365 5 6 1.6521 2.1125 1.2930 6 1 1.9388 1.6720 2.2366 7 6 0.9314 3.2876 1.2714 8 7 0.4846 3.7641 0.1299 9 14 0.5896 4.2031 2.8634 10 1 1.1957 3.4636 3.9996 11 1 1.1783 5.5644 2.7877 12 1 -0.8773 4.3089 3.0684 13 6 3.5637 1.4447 -0.1385 14 1 4.0328 0.9669 0.7215 15 6 4.0001 0.7646 -1.4552 16 7 5.1632 1.5265 -1.9248 17 6 5.2410 2.7227 -1.3134 18 8 6.1009 3.5528 -1.5191 19 6 4.0995 2.8820 -0.3335 20 1 -0.3634 0.4246 0.9358 21 1 -0.3633 0.5981 -0.8357 22 1 -0.3633 -1.0228 -0.1002 23 1 1.8933 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8901 25 1 -0.0222 4.5911 0.1147 26 1 4.2787 -0.2727 -1.2695 27 1 3.1960 0.8130 -2.1894 28 1 5.7943 1.2080 -2.5891 29 1 3.3247 3.5246 -0.7516 30 1 4.4598 3.2864 0.6124 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260711305.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:12 Heat of formation + Delta-G solvation = -60.959283 kcal Electronic energy + Delta-G solvation = -12897.439785 eV Core-core repulsion = 10691.613902 eV Total energy + Delta-G solvation = -2205.825883 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.62145 -36.46277 -34.34089 -31.75540 -30.42906 -27.19412 -26.20314 -23.41542 -20.95666 -19.83082 -18.97443 -16.78262 -16.74882 -15.21278 -14.53941 -14.25439 -13.46636 -13.14559 -12.84406 -12.56892 -12.48680 -12.25560 -11.31312 -11.09193 -10.96712 -10.62269 -10.49252 -10.36342 -10.00772 -9.89392 -9.08658 -8.95874 -8.90893 -8.61172 -8.49164 -6.07082 -4.07921 3.18808 3.27372 3.37444 3.40063 3.91428 4.40474 5.19076 5.20721 5.43892 5.65824 5.92825 6.03355 6.20815 6.25240 6.38659 6.45967 6.77601 6.79112 6.93431 7.08568 7.10966 7.31568 7.33056 7.46884 7.54809 7.78325 7.87719 8.38073 8.79344 9.02857 9.55378 11.01684 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.031148 B = 0.013579 C = 0.010326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.706796 B = 2061.521744 C = 2711.018404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.110 4.110 3 C 0.037 3.963 4 H 0.073 0.927 5 C -0.505 4.505 6 H 0.053 0.947 7 C 0.070 3.930 8 N -0.891 5.891 9 Si 0.882 3.118 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.286 1.286 13 C -0.084 4.084 14 H 0.069 0.931 15 C 0.099 3.901 16 N -0.739 5.739 17 C 0.516 3.484 18 O -0.559 6.559 19 C -0.133 4.133 20 H 0.059 0.941 21 H 0.047 0.953 22 H 0.022 0.978 23 H 0.028 0.972 24 H 0.040 0.960 25 H 0.261 0.739 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.398 0.602 29 H 0.113 0.887 30 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.692 -6.253 -1.883 7.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.148 4.148 3 C 0.018 3.982 4 H 0.091 0.909 5 C -0.543 4.543 6 H 0.071 0.929 7 C -0.132 4.132 8 N -0.529 5.529 9 Si 0.710 3.290 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.212 1.212 13 C -0.103 4.103 14 H 0.088 0.912 15 C -0.025 4.025 16 N -0.393 5.393 17 C 0.304 3.696 18 O -0.438 6.438 19 C -0.173 4.173 20 H 0.078 0.922 21 H 0.066 0.934 22 H 0.041 0.959 23 H 0.047 0.953 24 H 0.059 0.941 25 H 0.071 0.929 26 H 0.084 0.916 27 H 0.087 0.913 28 H 0.234 0.766 29 H 0.132 0.868 30 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.933 -5.623 -1.967 6.641 hybrid contribution -0.002 0.347 0.568 0.666 sum 2.931 -5.277 -1.399 6.196 Atomic orbital electron populations 1.21523 0.96708 0.97828 1.02615 1.21617 0.95757 0.99314 0.98099 1.19079 0.87210 0.92050 0.99847 0.90851 1.21002 1.34178 1.07023 0.92113 0.92890 1.24909 0.95168 0.97357 0.95762 1.69885 1.36783 1.21446 1.24774 0.86694 0.77897 0.80086 0.84298 1.19767 1.20939 1.21183 1.22445 1.01426 0.92701 0.93737 0.91221 1.22404 0.86961 0.95091 0.98045 1.46392 1.29780 1.19202 1.43948 1.21581 0.85929 0.80637 0.81448 1.90654 1.40117 1.45525 1.67501 1.22231 0.96116 1.00233 0.98749 0.92201 0.93427 0.95908 0.95340 0.94097 0.92920 0.91617 0.91324 0.76556 0.86847 0.89034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.50 9.64 37.16 0.36 -2.14 16 2 C -0.11 -2.09 5.26 -26.73 -0.14 -2.23 16 3 C 0.04 0.80 1.47 -91.77 -0.13 0.66 16 4 H 0.07 1.79 6.84 -51.93 -0.36 1.43 16 5 C -0.51 -12.38 7.01 -34.44 -0.24 -12.63 16 6 H 0.05 1.32 7.82 -52.48 -0.41 0.91 16 7 C 0.07 1.79 5.45 -17.82 -0.10 1.70 16 8 N -0.89 -23.80 12.62 55.43 0.70 -23.10 16 9 Si 0.88 20.33 29.54 -169.99 -5.02 15.31 16 10 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 13 C -0.08 -1.57 2.67 -88.99 -0.24 -1.81 16 14 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 15 C 0.10 1.54 6.18 -3.12 -0.02 1.52 16 16 N -0.74 -11.84 6.25 -59.17 -0.37 -12.21 16 17 C 0.52 10.19 8.43 -10.79 -0.09 10.10 16 18 O -0.56 -12.79 18.03 5.56 0.10 -12.69 16 19 C -0.13 -2.70 6.02 -26.74 -0.16 -2.86 16 20 H 0.06 1.26 7.58 -51.93 -0.39 0.87 16 21 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 22 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 23 H 0.03 0.47 7.00 -51.93 -0.36 0.11 16 24 H 0.04 0.76 8.14 -51.92 -0.42 0.34 16 25 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 26 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.07 1.07 7.72 -51.93 -0.40 0.67 16 28 H 0.40 5.33 8.96 -40.82 -0.37 4.97 16 29 H 0.11 2.56 7.84 -51.93 -0.41 2.15 16 30 H 0.09 1.86 8.14 -51.93 -0.42 1.44 16 LS Contribution 250.80 15.07 3.78 3.78 Total: -1.00 -27.80 250.80 -5.94 -33.74 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -4.37 Total: 2.86 kcal Atomic # 6 Polarization: -6.92 SS G_CDS: -0.76 Total: -7.68 kcal Atomic # 7 Polarization: -35.64 SS G_CDS: 0.33 Total: -35.31 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: 0.10 Total: -12.69 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -27.80 -5.94 -33.74 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260711305.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.215 kcal (2) G-P(sol) polarization free energy of solvation -27.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds