Wall clock time and date at job start Mon Mar 30 2020 02:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47143 * 2 1 4 4 H 1.09002 * 109.46601 * 305.51340 * 3 2 1 5 5 C 1.50702 * 109.47102 * 65.50831 * 3 2 1 6 6 H 1.08006 * 119.99657 * 55.48132 * 5 3 2 7 7 C 1.37875 * 119.99975 * 235.48318 * 5 3 2 8 8 N 1.31512 * 120.00072 * 5.78165 * 7 5 3 9 9 Si 1.86798 * 119.99867 * 185.78743 * 7 5 3 10 10 H 1.48499 * 109.47310 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.47071 * 119.99854 * 9 7 5 12 12 H 1.48497 * 109.47153 * 239.99671 * 9 7 5 13 13 C 1.53001 * 109.46978 * 185.51148 * 3 2 1 14 14 H 1.08996 * 110.88717 * 296.18453 * 13 3 2 15 15 C 1.54482 * 110.96860 * 59.99876 * 13 3 2 16 16 N 1.46763 * 105.54786 * 143.49135 * 15 13 3 17 17 C 1.34565 * 111.21735 * 343.08903 * 16 15 13 18 18 O 1.21275 * 124.92036 * 180.34695 * 17 16 15 19 19 C 1.51285 * 110.13694 * 0.29217 * 17 16 15 20 20 H 1.09000 * 109.47278 * 294.40364 * 1 2 3 21 21 H 1.08999 * 109.47198 * 54.40853 * 1 2 3 22 22 H 1.09002 * 109.46742 * 174.40694 * 1 2 3 23 23 H 1.08994 * 109.47253 * 239.99328 * 2 1 3 24 24 H 1.09008 * 109.46723 * 119.99708 * 2 1 3 25 25 H 0.97004 * 119.99735 * 180.02562 * 8 7 5 26 26 H 1.08999 * 110.24577 * 262.52955 * 15 13 3 27 27 H 1.08997 * 110.24974 * 24.44423 * 15 13 3 28 28 H 0.96996 * 124.35195 * 163.02539 * 16 15 13 29 29 H 1.09000 * 110.48664 * 257.63983 * 19 17 16 30 30 H 1.09002 * 110.59772 * 135.05916 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5983 1.9840 -0.8365 5 6 1.6521 2.1125 1.2930 6 1 1.9388 1.6720 2.2366 7 6 0.9314 3.2876 1.2714 8 7 0.4846 3.7641 0.1299 9 14 0.5896 4.2031 2.8634 10 1 1.1957 3.4636 3.9996 11 1 1.1783 5.5644 2.7877 12 1 -0.8773 4.3089 3.0684 13 6 3.5637 1.4447 -0.1385 14 1 4.0328 0.9669 0.7215 15 6 4.0001 0.7646 -1.4552 16 7 5.1632 1.5265 -1.9248 17 6 5.2410 2.7227 -1.3134 18 8 6.1009 3.5528 -1.5191 19 6 4.0995 2.8820 -0.3335 20 1 -0.3634 0.4246 0.9358 21 1 -0.3633 0.5981 -0.8357 22 1 -0.3633 -1.0228 -0.1002 23 1 1.8933 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8901 25 1 -0.0222 4.5911 0.1147 26 1 4.2787 -0.2727 -1.2695 27 1 3.1960 0.8130 -2.1894 28 1 5.7943 1.2080 -2.5891 29 1 3.3247 3.5246 -0.7516 30 1 4.4598 3.2864 0.6124 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260711305.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:12 Heat of formation + Delta-G solvation = -79.352767 kcal Electronic energy + Delta-G solvation = -12898.237386 eV Core-core repulsion = 10691.613902 eV Total energy + Delta-G solvation = -2206.623484 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.15776 -38.09958 -35.97599 -33.60938 -31.95160 -28.77888 -27.90725 -25.11830 -22.47926 -21.37576 -20.58455 -18.61153 -18.27065 -16.83689 -16.36315 -15.84284 -15.12511 -14.68128 -14.39703 -14.13756 -14.08242 -13.88000 -13.07014 -12.87044 -12.78726 -12.19237 -12.17824 -12.08952 -11.63776 -11.48905 -10.80471 -10.69742 -10.65024 -10.36693 -9.99481 -8.03378 -6.06192 1.40937 1.47508 1.53945 1.60115 2.48762 2.55408 3.27918 3.67953 3.96312 4.16799 4.44554 4.67472 4.70467 4.83249 4.87009 4.92663 5.20721 5.24635 5.32529 5.48826 5.53932 5.73893 5.80959 5.93440 5.93706 6.05039 6.09783 6.51952 7.11754 7.33386 7.58189 9.04668 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.031148 B = 0.013579 C = 0.010326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.706796 B = 2061.521744 C = 2711.018404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.106 4.106 3 C 0.036 3.964 4 H 0.042 0.958 5 C -0.503 4.503 6 H 0.047 0.953 7 C 0.027 3.973 8 N -0.919 5.919 9 Si 0.927 3.073 10 H -0.267 1.267 11 H -0.289 1.289 12 H -0.287 1.287 13 C -0.081 4.081 14 H 0.079 0.921 15 C 0.106 3.894 16 N -0.716 5.716 17 C 0.515 3.485 18 O -0.595 6.595 19 C -0.133 4.133 20 H 0.032 0.968 21 H 0.029 0.971 22 H 0.054 0.946 23 H 0.061 0.939 24 H 0.048 0.952 25 H 0.257 0.743 26 H 0.107 0.893 27 H 0.074 0.926 28 H 0.416 0.584 29 H 0.084 0.916 30 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.366 -8.364 -2.062 9.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.144 4.144 3 C 0.017 3.983 4 H 0.060 0.940 5 C -0.541 4.541 6 H 0.066 0.934 7 C -0.172 4.172 8 N -0.560 5.560 9 Si 0.754 3.246 10 H -0.192 1.192 11 H -0.215 1.215 12 H -0.214 1.214 13 C -0.100 4.100 14 H 0.097 0.903 15 C -0.017 4.017 16 N -0.370 5.370 17 C 0.303 3.697 18 O -0.477 6.477 19 C -0.173 4.173 20 H 0.052 0.948 21 H 0.048 0.952 22 H 0.073 0.927 23 H 0.079 0.921 24 H 0.067 0.933 25 H 0.066 0.934 26 H 0.125 0.875 27 H 0.092 0.908 28 H 0.256 0.744 29 H 0.102 0.898 30 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.606 -7.783 -2.150 8.843 hybrid contribution -0.227 0.953 0.630 1.164 sum 3.379 -6.830 -1.520 7.771 Atomic orbital electron populations 1.21477 0.97232 0.99235 1.00417 1.21553 0.95280 0.97533 1.00025 1.18998 0.88967 0.93258 0.97048 0.93990 1.21319 1.32837 1.06714 0.93255 0.93445 1.25428 0.95820 0.98416 0.97522 1.69990 1.38145 1.21755 1.26076 0.85990 0.77437 0.78927 0.82202 1.19154 1.21548 1.21389 1.22286 0.99404 0.92091 0.96204 0.90273 1.22422 0.86829 0.96424 0.96047 1.46203 1.29880 1.17701 1.43259 1.21405 0.85243 0.81384 0.81621 1.90636 1.41370 1.46959 1.68704 1.22124 0.95762 1.00973 0.98485 0.94835 0.95160 0.92693 0.92057 0.93287 0.93424 0.87514 0.90806 0.74432 0.89759 0.89964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.66 9.64 71.98 0.69 -3.96 16 2 C -0.11 -3.72 5.26 30.60 0.16 -3.56 16 3 C 0.04 1.52 1.47 -11.54 -0.02 1.51 16 4 H 0.04 2.04 6.84 -2.39 -0.02 2.03 16 5 C -0.50 -24.55 7.01 25.60 0.18 -24.37 16 6 H 0.05 2.33 7.82 -2.91 -0.02 2.31 16 7 C 0.03 1.38 5.45 84.65 0.46 1.84 16 8 N -0.92 -50.34 12.62 21.45 0.27 -50.07 16 9 Si 0.93 42.14 29.54 68.60 2.03 44.17 16 10 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 11 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 12 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16 13 C -0.08 -2.86 2.67 -9.74 -0.03 -2.89 16 14 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 15 C 0.11 2.89 6.18 86.83 0.54 3.43 16 16 N -0.72 -20.73 6.25 -459.61 -2.87 -23.61 16 17 C 0.52 19.79 8.43 87.88 0.74 20.53 16 18 O -0.59 -26.97 18.03 -3.01 -0.05 -27.02 16 19 C -0.13 -5.38 6.02 30.59 0.18 -5.19 16 20 H 0.03 1.38 7.58 -2.39 -0.02 1.36 16 21 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 22 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 23 H 0.06 1.76 7.00 -2.39 -0.02 1.74 16 24 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 25 H 0.26 13.71 8.31 -92.71 -0.77 12.94 16 26 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 27 H 0.07 2.02 7.72 -2.39 -0.02 2.00 16 28 H 0.42 9.60 8.96 -92.71 -0.83 8.77 16 29 H 0.08 3.92 7.84 -2.39 -0.02 3.90 16 30 H 0.08 3.40 8.14 -2.39 -0.02 3.38 16 Total: -1.00 -60.12 250.80 2.58 -57.54 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: 0.29 Total: 11.65 kcal Atomic # 6 Polarization: -15.58 SS G_CDS: 2.91 Total: -12.66 kcal Atomic # 7 Polarization: -71.07 SS G_CDS: -2.60 Total: -73.68 kcal Atomic # 8 Polarization: -26.97 SS G_CDS: -0.05 Total: -27.02 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.17 kcal Total: -60.12 2.58 -57.54 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260711305.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.810 kcal (2) G-P(sol) polarization free energy of solvation -60.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds