Wall clock time and date at job start Mon Mar 30 2020 02:07:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47174 * 2 1 4 4 H 1.09006 * 109.47056 * 180.75613 * 3 2 1 5 5 C 1.50698 * 109.47452 * 60.75928 * 3 2 1 6 6 H 1.07997 * 119.99758 * 240.00190 * 5 3 2 7 7 C 1.37878 * 120.00009 * 59.99282 * 5 3 2 8 8 N 1.31515 * 119.99994 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99894 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.46840 * 90.00352 * 9 7 5 11 11 H 1.48498 * 109.46645 * 210.00006 * 9 7 5 12 12 H 1.48491 * 109.47248 * 330.00300 * 9 7 5 13 13 C 1.52997 * 109.47456 * 300.75407 * 3 2 1 14 14 H 1.09009 * 110.88571 * 60.86696 * 13 3 2 15 15 C 1.54483 * 110.97108 * 297.05661 * 13 3 2 16 16 N 1.46757 * 105.54906 * 216.50293 * 15 13 3 17 17 C 1.34421 * 111.30316 * 16.97618 * 16 15 13 18 18 O 1.21285 * 124.94484 * 179.61017 * 17 16 15 19 19 C 1.51280 * 110.11147 * 359.58935 * 17 16 15 20 20 H 1.08994 * 109.47344 * 186.91426 * 1 2 3 21 21 H 1.08998 * 109.46762 * 306.91879 * 1 2 3 22 22 H 1.09008 * 109.47125 * 66.91190 * 1 2 3 23 23 H 1.09011 * 109.46689 * 239.99943 * 2 1 3 24 24 H 1.08995 * 109.46971 * 120.00423 * 2 1 3 25 25 H 0.96995 * 120.00374 * 179.97438 * 8 7 5 26 26 H 1.09009 * 110.24283 * 97.46668 * 15 13 3 27 27 H 1.08999 * 110.24752 * 335.55150 * 15 13 3 28 28 H 0.97004 * 124.34859 * 196.99107 * 16 15 13 29 29 H 1.09002 * 110.48605 * 102.43279 * 19 17 16 30 30 H 1.09005 * 110.48560 * 224.93718 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1300 1.4424 -0.0136 5 6 1.5531 2.1474 1.2397 6 1 0.9311 3.0259 1.1522 7 6 1.9017 1.6708 2.4857 8 7 2.6595 0.6012 2.5922 9 14 1.2976 2.5444 4.0224 10 1 -0.0053 1.9671 4.4400 11 1 2.2894 2.3688 5.1136 12 1 1.1286 3.9914 3.7351 13 6 1.5146 2.1692 -1.2396 14 1 0.4249 2.1961 -1.2416 15 6 2.0539 1.5179 -2.5324 16 7 2.2870 2.6275 -3.4643 17 6 2.3252 3.8065 -2.8199 18 8 2.5100 4.8819 -3.3494 19 6 2.1035 3.5969 -1.3382 20 1 -0.3634 -1.0201 0.1237 21 1 -0.3633 0.6173 0.8216 22 1 -0.3634 0.4030 -0.9454 23 1 1.8933 -0.5139 -0.8901 24 1 1.8933 -0.5139 0.8899 25 1 2.9051 0.2661 3.4687 26 1 1.3162 0.8287 -2.9436 27 1 2.9875 0.9933 -2.3294 28 1 2.3989 2.5234 -4.4222 29 1 3.0489 3.6564 -0.7988 30 1 1.3974 4.3313 -0.9504 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260711309.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:14 Heat of formation + Delta-G solvation = -57.539523 kcal Electronic energy + Delta-G solvation = -12916.832718 eV Core-core repulsion = 10711.155127 eV Total energy + Delta-G solvation = -2205.677591 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.77898 -36.64800 -34.49344 -31.64086 -30.23112 -27.03603 -26.37846 -23.48384 -21.53394 -20.01653 -18.50781 -16.93142 -16.37993 -15.35859 -14.57712 -14.34496 -13.64576 -13.32094 -12.95023 -12.77422 -12.31300 -11.95136 -11.67334 -10.98974 -10.92848 -10.65838 -10.54665 -10.46717 -9.80167 -9.74692 -9.41878 -9.02243 -8.77441 -8.69136 -8.35553 -6.02734 -4.08185 3.05508 3.28367 3.36305 3.39313 3.81294 4.40574 5.05646 5.26908 5.29740 5.52079 5.79625 6.01516 6.15502 6.36045 6.39481 6.55417 6.60590 6.68498 6.85332 6.99712 7.19472 7.37381 7.39479 7.44529 7.69657 7.84124 8.08558 8.38395 8.67451 8.93903 9.56354 11.02858 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.040577 B = 0.011458 C = 0.009745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.886737 B = 2443.184160 C = 2872.554161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.117 4.117 3 C 0.059 3.941 4 H 0.030 0.970 5 C -0.506 4.506 6 H 0.056 0.944 7 C 0.064 3.936 8 N -0.889 5.889 9 Si 0.886 3.114 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.274 1.274 13 C -0.086 4.086 14 H 0.079 0.921 15 C 0.101 3.899 16 N -0.736 5.736 17 C 0.516 3.484 18 O -0.558 6.558 19 C -0.140 4.140 20 H 0.023 0.977 21 H 0.064 0.936 22 H 0.029 0.971 23 H 0.015 0.985 24 H 0.092 0.908 25 H 0.260 0.740 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.400 0.600 29 H 0.106 0.894 30 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.019 -1.253 -6.194 6.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.155 4.155 3 C 0.041 3.959 4 H 0.048 0.952 5 C -0.545 4.545 6 H 0.074 0.926 7 C -0.138 4.138 8 N -0.528 5.528 9 Si 0.714 3.286 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.199 1.199 13 C -0.105 4.105 14 H 0.097 0.903 15 C -0.023 4.023 16 N -0.391 5.391 17 C 0.304 3.696 18 O -0.436 6.436 19 C -0.180 4.180 20 H 0.042 0.958 21 H 0.083 0.917 22 H 0.048 0.952 23 H 0.034 0.966 24 H 0.110 0.890 25 H 0.070 0.930 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.236 0.764 29 H 0.124 0.876 30 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.852 -0.800 -6.190 6.510 hybrid contribution -0.289 0.203 0.495 0.608 sum -2.141 -0.597 -5.695 6.113 Atomic orbital electron populations 1.21682 0.98163 0.98813 1.00502 1.21551 0.94180 0.99327 1.00478 1.18737 0.95927 0.91462 0.89822 0.95236 1.21062 1.31439 1.11733 0.90228 0.92561 1.24909 0.95041 0.94954 0.98857 1.69856 1.36501 1.22714 1.23705 0.86684 0.78505 0.80210 0.83171 1.20796 1.21369 1.19897 1.22390 1.00271 0.93009 0.94813 0.90258 1.22348 1.00899 0.88743 0.90345 1.46356 1.73909 1.08667 1.10139 1.21419 0.74045 0.83070 0.91080 1.90672 1.51167 1.27554 1.74255 1.22342 1.04398 0.99702 0.91566 0.95816 0.91735 0.95211 0.96621 0.88984 0.93034 0.91247 0.91157 0.76352 0.87560 0.88798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.59 9.23 37.16 0.34 -2.25 16 2 C -0.12 -2.47 5.30 -26.73 -0.14 -2.61 16 3 C 0.06 1.29 1.42 -91.78 -0.13 1.16 16 4 H 0.03 0.71 8.12 -51.93 -0.42 0.29 16 5 C -0.51 -12.46 6.77 -34.44 -0.23 -12.69 16 6 H 0.06 1.38 7.64 -52.49 -0.40 0.98 16 7 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 8 N -0.89 -23.81 11.31 55.43 0.63 -23.18 16 9 Si 0.89 20.33 29.54 -169.99 -5.02 15.31 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 11 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 13 C -0.09 -1.55 2.18 -88.92 -0.19 -1.75 16 14 H 0.08 1.44 6.72 -51.92 -0.35 1.09 16 15 C 0.10 1.52 6.37 -3.12 -0.02 1.50 16 16 N -0.74 -11.12 6.24 -59.20 -0.37 -11.49 16 17 C 0.52 9.46 8.43 -10.86 -0.09 9.37 16 18 O -0.56 -11.97 18.03 5.55 0.10 -11.87 16 19 C -0.14 -2.56 5.86 -26.67 -0.16 -2.72 16 20 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 21 H 0.06 1.37 7.01 -51.93 -0.36 1.01 16 22 H 0.03 0.50 6.84 -51.92 -0.36 0.15 16 23 H 0.02 0.29 7.38 -51.92 -0.38 -0.10 16 24 H 0.09 2.25 6.05 -51.93 -0.31 1.93 16 25 H 0.26 6.74 8.31 -40.82 -0.34 6.41 16 26 H 0.07 0.93 8.14 -51.92 -0.42 0.51 16 27 H 0.07 1.07 7.84 -51.93 -0.41 0.67 16 28 H 0.40 5.04 8.96 -40.82 -0.37 4.68 16 29 H 0.11 2.02 7.88 -51.93 -0.41 1.61 16 30 H 0.09 1.70 8.14 -51.93 -0.42 1.28 16 LS Contribution 244.51 15.07 3.68 3.68 Total: -1.00 -27.82 244.51 -5.87 -33.69 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -4.17 Total: 2.31 kcal Atomic # 6 Polarization: -7.72 SS G_CDS: -0.72 Total: -8.44 kcal Atomic # 7 Polarization: -34.93 SS G_CDS: 0.26 Total: -34.67 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: 0.10 Total: -11.87 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -27.82 -5.87 -33.69 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260711309.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.848 kcal (2) G-P(sol) polarization free energy of solvation -27.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds