Wall clock time and date at job start Mon Mar 30 2020 02:07:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47174 * 2 1 4 4 H 1.09006 * 109.47056 * 180.75613 * 3 2 1 5 5 C 1.50698 * 109.47452 * 60.75928 * 3 2 1 6 6 H 1.07997 * 119.99758 * 240.00190 * 5 3 2 7 7 C 1.37878 * 120.00009 * 59.99282 * 5 3 2 8 8 N 1.31515 * 119.99994 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99894 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.46840 * 90.00352 * 9 7 5 11 11 H 1.48498 * 109.46645 * 210.00006 * 9 7 5 12 12 H 1.48491 * 109.47248 * 330.00300 * 9 7 5 13 13 C 1.52997 * 109.47456 * 300.75407 * 3 2 1 14 14 H 1.09009 * 110.88571 * 60.86696 * 13 3 2 15 15 C 1.54483 * 110.97108 * 297.05661 * 13 3 2 16 16 N 1.46757 * 105.54906 * 216.50293 * 15 13 3 17 17 C 1.34421 * 111.30316 * 16.97618 * 16 15 13 18 18 O 1.21285 * 124.94484 * 179.61017 * 17 16 15 19 19 C 1.51280 * 110.11147 * 359.58935 * 17 16 15 20 20 H 1.08994 * 109.47344 * 186.91426 * 1 2 3 21 21 H 1.08998 * 109.46762 * 306.91879 * 1 2 3 22 22 H 1.09008 * 109.47125 * 66.91190 * 1 2 3 23 23 H 1.09011 * 109.46689 * 239.99943 * 2 1 3 24 24 H 1.08995 * 109.46971 * 120.00423 * 2 1 3 25 25 H 0.96995 * 120.00374 * 179.97438 * 8 7 5 26 26 H 1.09009 * 110.24283 * 97.46668 * 15 13 3 27 27 H 1.08999 * 110.24752 * 335.55150 * 15 13 3 28 28 H 0.97004 * 124.34859 * 196.99107 * 16 15 13 29 29 H 1.09002 * 110.48605 * 102.43279 * 19 17 16 30 30 H 1.09005 * 110.48560 * 224.93718 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1300 1.4424 -0.0136 5 6 1.5531 2.1474 1.2397 6 1 0.9311 3.0259 1.1522 7 6 1.9017 1.6708 2.4857 8 7 2.6595 0.6012 2.5922 9 14 1.2976 2.5444 4.0224 10 1 -0.0053 1.9671 4.4400 11 1 2.2894 2.3688 5.1136 12 1 1.1286 3.9914 3.7351 13 6 1.5146 2.1692 -1.2396 14 1 0.4249 2.1961 -1.2416 15 6 2.0539 1.5179 -2.5324 16 7 2.2870 2.6275 -3.4643 17 6 2.3252 3.8065 -2.8199 18 8 2.5100 4.8819 -3.3494 19 6 2.1035 3.5969 -1.3382 20 1 -0.3634 -1.0201 0.1237 21 1 -0.3633 0.6173 0.8216 22 1 -0.3634 0.4030 -0.9454 23 1 1.8933 -0.5139 -0.8901 24 1 1.8933 -0.5139 0.8899 25 1 2.9051 0.2661 3.4687 26 1 1.3162 0.8287 -2.9436 27 1 2.9875 0.9933 -2.3294 28 1 2.3989 2.5234 -4.4222 29 1 3.0489 3.6564 -0.7988 30 1 1.3974 4.3313 -0.9504 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260711309.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:14 Heat of formation + Delta-G solvation = -75.899010 kcal Electronic energy + Delta-G solvation = -12917.628845 eV Core-core repulsion = 10711.155127 eV Total energy + Delta-G solvation = -2206.473718 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.22144 -38.23508 -36.10639 -33.47903 -31.72320 -28.56106 -28.03887 -25.22202 -23.05739 -21.44565 -20.13815 -18.34318 -18.16045 -16.99649 -16.35058 -15.83702 -15.17713 -14.97770 -14.45610 -14.21050 -13.94457 -13.61930 -13.30188 -12.79480 -12.55718 -12.31870 -12.23622 -12.09901 -11.46261 -11.44269 -11.06080 -10.71279 -10.46658 -10.27994 -10.01678 -7.98790 -6.07795 1.44150 1.48375 1.54880 1.59538 2.48644 2.54747 3.30500 3.63692 3.87755 4.11625 4.36951 4.76911 4.77523 4.81424 4.83277 4.99235 5.10857 5.14113 5.35084 5.39448 5.68943 5.77218 5.83395 5.91044 6.03718 6.08689 6.30750 6.50861 7.02211 7.31919 7.58672 9.05116 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.040577 B = 0.011458 C = 0.009745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.886737 B = 2443.184160 C = 2872.554161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.115 4.115 3 C 0.060 3.940 4 H 0.001 0.999 5 C -0.508 4.508 6 H 0.053 0.947 7 C 0.019 3.981 8 N -0.915 5.915 9 Si 0.934 3.066 10 H -0.280 1.280 11 H -0.292 1.292 12 H -0.272 1.272 13 C -0.081 4.081 14 H 0.086 0.914 15 C 0.107 3.893 16 N -0.716 5.716 17 C 0.517 3.483 18 O -0.592 6.592 19 C -0.140 4.140 20 H 0.036 0.964 21 H 0.038 0.962 22 H 0.056 0.944 23 H 0.042 0.958 24 H 0.055 0.945 25 H 0.256 0.744 26 H 0.102 0.898 27 H 0.073 0.927 28 H 0.416 0.584 29 H 0.093 0.907 30 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.903 -1.681 -7.447 8.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.153 4.153 3 C 0.042 3.958 4 H 0.019 0.981 5 C -0.546 4.546 6 H 0.071 0.929 7 C -0.180 4.180 8 N -0.555 5.555 9 Si 0.762 3.238 10 H -0.206 1.206 11 H -0.218 1.218 12 H -0.196 1.196 13 C -0.100 4.100 14 H 0.104 0.896 15 C -0.016 4.016 16 N -0.370 5.370 17 C 0.305 3.695 18 O -0.474 6.474 19 C -0.180 4.180 20 H 0.055 0.945 21 H 0.057 0.943 22 H 0.075 0.925 23 H 0.060 0.940 24 H 0.074 0.926 25 H 0.065 0.935 26 H 0.120 0.880 27 H 0.092 0.908 28 H 0.256 0.744 29 H 0.111 0.889 30 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.745 -1.252 -7.462 8.049 hybrid contribution 0.000 0.318 0.878 0.934 sum -2.746 -0.934 -6.585 7.195 Atomic orbital electron populations 1.21588 0.96616 0.99386 1.00882 1.21435 0.95495 0.98339 0.99985 1.18631 0.94200 0.92415 0.90583 0.98076 1.21395 1.30423 1.11370 0.91415 0.92883 1.25502 0.95613 0.95633 1.01217 1.69982 1.37854 1.23904 1.23769 0.85919 0.77893 0.79408 0.80590 1.20560 1.21817 1.19633 1.22204 1.00468 0.92551 0.94735 0.89606 1.22331 1.01873 0.88584 0.88850 1.46187 1.72262 1.07521 1.11023 1.21306 0.73923 0.83339 0.90974 1.90659 1.53048 1.28986 1.74699 1.22286 1.03771 1.00060 0.91906 0.94457 0.94317 0.92513 0.93984 0.92628 0.93454 0.87972 0.90849 0.74409 0.88876 0.88976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.61 9.23 71.98 0.66 -3.95 16 2 C -0.11 -4.65 5.30 30.59 0.16 -4.49 16 3 C 0.06 2.58 1.42 -11.54 -0.02 2.57 16 4 H 0.00 0.05 8.12 -2.38 -0.02 0.04 16 5 C -0.51 -24.89 6.77 25.60 0.17 -24.72 16 6 H 0.05 2.58 7.64 -2.91 -0.02 2.56 16 7 C 0.02 0.97 5.30 84.65 0.45 1.41 16 8 N -0.91 -49.71 11.31 21.45 0.24 -49.47 16 9 Si 0.93 41.87 29.54 68.60 2.03 43.90 16 10 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 11 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 12 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 13 C -0.08 -2.74 2.18 -9.69 -0.02 -2.77 16 14 H 0.09 2.85 6.72 -2.38 -0.02 2.83 16 15 C 0.11 2.86 6.37 86.83 0.55 3.41 16 16 N -0.72 -19.35 6.24 -459.80 -2.87 -22.22 16 17 C 0.52 18.05 8.43 87.90 0.74 18.79 16 18 O -0.59 -24.79 18.03 -3.05 -0.05 -24.84 16 19 C -0.14 -4.98 5.86 30.63 0.18 -4.80 16 20 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 21 H 0.04 1.58 7.01 -2.39 -0.02 1.57 16 22 H 0.06 1.73 6.84 -2.38 -0.02 1.71 16 23 H 0.04 1.46 7.38 -2.38 -0.02 1.44 16 24 H 0.06 2.70 6.05 -2.39 -0.01 2.69 16 25 H 0.26 13.55 8.31 -92.71 -0.77 12.78 16 26 H 0.10 2.17 8.14 -2.38 -0.02 2.15 16 27 H 0.07 1.99 7.84 -2.39 -0.02 1.97 16 28 H 0.42 8.99 8.96 -92.71 -0.83 8.16 16 29 H 0.09 3.56 7.88 -2.39 -0.02 3.54 16 30 H 0.09 3.27 8.14 -2.38 -0.02 3.25 16 Total: -1.00 -59.18 244.51 2.53 -56.65 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: 0.30 Total: 10.53 kcal Atomic # 6 Polarization: -17.42 SS G_CDS: 2.89 Total: -14.53 kcal Atomic # 7 Polarization: -69.07 SS G_CDS: -2.63 Total: -71.69 kcal Atomic # 8 Polarization: -24.79 SS G_CDS: -0.05 Total: -24.84 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal Total: -59.18 2.53 -56.65 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260711309.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.249 kcal (2) G-P(sol) polarization free energy of solvation -59.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds