Wall clock time and date at job start Mon Mar 30 2020 02:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46397 * 2 1 4 4 H 1.08994 * 109.47636 * 305.51406 * 3 2 1 5 5 C 1.50701 * 109.47118 * 65.51682 * 3 2 1 6 6 H 1.07994 * 120.00195 * 55.48030 * 5 3 2 7 7 C 1.37881 * 119.99709 * 235.48270 * 5 3 2 8 8 N 1.31516 * 119.99980 * 5.78244 * 7 5 3 9 9 Si 1.86796 * 119.99870 * 185.78546 * 7 5 3 10 10 H 1.48500 * 109.47325 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47154 * 120.00010 * 9 7 5 12 12 H 1.48500 * 109.47032 * 239.99969 * 9 7 5 13 13 C 1.53005 * 109.46639 * 185.51256 * 3 2 1 14 14 H 1.09004 * 110.88619 * 296.18883 * 13 3 2 15 15 C 1.54488 * 110.96648 * 172.38132 * 13 3 2 16 16 N 1.46764 * 105.40866 * 216.25619 * 15 13 3 17 17 C 1.34420 * 111.29913 * 17.40361 * 16 15 13 18 18 O 1.21280 * 124.94102 * 179.46075 * 17 16 15 19 19 C 1.51276 * 110.11601 * 359.18895 * 17 16 15 20 20 H 1.09008 * 109.46423 * 174.40502 * 1 2 3 21 21 H 1.08990 * 109.47534 * 294.40377 * 1 2 3 22 22 H 1.08997 * 109.47015 * 54.40971 * 1 2 3 23 23 H 1.08991 * 109.47515 * 240.00393 * 2 1 3 24 24 H 1.08994 * 109.47039 * 119.99472 * 2 1 3 25 25 H 0.96997 * 119.99470 * 180.02562 * 8 7 5 26 26 H 1.09000 * 110.24539 * 335.46698 * 15 13 3 27 27 H 1.08998 * 110.24502 * 97.37762 * 15 13 3 28 28 H 0.96996 * 124.35175 * 197.24083 * 16 15 13 29 29 H 1.09001 * 110.48942 * 102.67330 * 19 17 16 30 30 H 1.09009 * 110.48864 * 225.31753 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5982 1.9841 -0.8364 5 6 1.6521 2.1124 1.2931 6 1 1.9388 1.6720 2.2365 7 6 0.9311 3.2875 1.2715 8 7 0.4842 3.7640 0.1301 9 14 0.5894 4.2029 2.8636 10 1 1.1957 3.4635 3.9997 11 1 1.1778 5.5642 2.7879 12 1 -0.8776 4.3084 3.0688 13 6 3.5636 1.4449 -0.1386 14 1 4.0328 0.9670 0.7215 15 6 4.0988 2.8810 -0.3332 16 7 5.2240 2.7545 -1.2670 17 6 5.1874 1.5799 -1.9196 18 8 5.9919 1.2236 -2.7543 19 6 4.0005 0.7643 -1.4565 20 1 -0.3632 -1.0229 -0.1002 21 1 -0.3634 0.4245 0.9357 22 1 -0.3633 0.5981 -0.8357 23 1 1.8934 -0.5137 -0.8899 24 1 1.8933 -0.5137 0.8900 25 1 -0.0227 4.5908 0.1150 26 1 3.3226 3.5187 -0.7562 27 1 4.4434 3.2872 0.6177 28 1 5.9051 3.4325 -1.3983 29 1 3.1975 0.8073 -2.1924 30 1 4.2958 -0.2688 -1.2726 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260711312.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:16 Heat of formation + Delta-G solvation = -61.638919 kcal Electronic energy + Delta-G solvation = -12884.023928 eV Core-core repulsion = 10678.168574 eV Total energy + Delta-G solvation = -2205.855354 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.65356 -36.45077 -34.36475 -31.88382 -30.27029 -27.60525 -25.66546 -23.71804 -20.76731 -19.83514 -19.10576 -16.91155 -16.58254 -15.23213 -14.56618 -14.28926 -13.43677 -13.14562 -12.91210 -12.59467 -12.33064 -12.30086 -11.41025 -11.11919 -10.99960 -10.77426 -10.50776 -10.36629 -10.03471 -9.67559 -9.38144 -8.99133 -8.83685 -8.55527 -8.48111 -6.10626 -4.11856 3.11982 3.22388 3.32792 3.35853 3.98036 4.35952 5.08908 5.19965 5.42406 5.67381 5.93500 6.20424 6.22659 6.27220 6.39199 6.46469 6.63636 6.81072 6.88146 7.09945 7.11937 7.32712 7.34841 7.45800 7.58986 7.76482 7.85131 8.35684 8.77087 8.99572 9.51215 10.97735 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.036808 B = 0.012222 C = 0.009994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.530756 B = 2290.322801 C = 2801.018864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.109 4.109 3 C 0.036 3.964 4 H 0.073 0.927 5 C -0.506 4.506 6 H 0.053 0.947 7 C 0.069 3.931 8 N -0.891 5.891 9 Si 0.882 3.118 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.285 1.285 13 C -0.082 4.082 14 H 0.069 0.931 15 C 0.113 3.887 16 N -0.734 5.734 17 C 0.517 3.483 18 O -0.564 6.564 19 C -0.155 4.155 20 H 0.022 0.978 21 H 0.058 0.942 22 H 0.046 0.954 23 H 0.030 0.970 24 H 0.040 0.960 25 H 0.261 0.739 26 H 0.085 0.915 27 H 0.070 0.930 28 H 0.399 0.601 29 H 0.100 0.900 30 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.901 -1.938 0.398 3.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.147 4.147 3 C 0.017 3.983 4 H 0.092 0.908 5 C -0.544 4.544 6 H 0.071 0.929 7 C -0.133 4.133 8 N -0.529 5.529 9 Si 0.710 3.290 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.211 1.211 13 C -0.102 4.102 14 H 0.088 0.912 15 C -0.010 4.010 16 N -0.388 5.388 17 C 0.304 3.696 18 O -0.444 6.444 19 C -0.195 4.195 20 H 0.041 0.959 21 H 0.077 0.923 22 H 0.066 0.934 23 H 0.049 0.951 24 H 0.059 0.941 25 H 0.071 0.929 26 H 0.103 0.897 27 H 0.088 0.912 28 H 0.236 0.764 29 H 0.118 0.882 30 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 3.099 -2.049 -0.069 3.715 hybrid contribution 0.006 1.022 0.947 1.393 sum 3.105 -1.027 0.877 3.386 Atomic orbital electron populations 1.21523 0.96728 0.97872 1.02529 1.21590 0.95651 0.99207 0.98286 1.19069 0.87252 0.92223 0.99711 0.90847 1.21049 1.34220 1.06927 0.92212 0.92854 1.24921 0.95186 0.97438 0.95711 1.69899 1.36787 1.21461 1.24737 0.86702 0.78034 0.79923 0.84357 1.19762 1.21043 1.21147 1.22434 1.01403 0.92373 0.93975 0.91226 1.22188 0.87169 0.99622 0.92017 1.46467 1.29614 1.19303 1.43388 1.21209 0.86082 0.82634 0.79664 1.90661 1.44989 1.74537 1.34182 1.22522 0.96599 0.99802 1.00594 0.95872 0.92259 0.93438 0.95135 0.94126 0.92941 0.89675 0.91152 0.76402 0.88167 0.89319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.54 9.64 37.16 0.36 -2.18 16 2 C -0.11 -2.14 5.26 -26.73 -0.14 -2.28 16 3 C 0.04 0.78 1.47 -91.77 -0.13 0.65 16 4 H 0.07 1.78 6.83 -51.93 -0.35 1.43 16 5 C -0.51 -12.15 7.01 -34.44 -0.24 -12.39 16 6 H 0.05 1.31 7.82 -52.49 -0.41 0.90 16 7 C 0.07 1.73 5.45 -17.82 -0.10 1.63 16 8 N -0.89 -23.23 12.62 55.43 0.70 -22.53 16 9 Si 0.88 19.71 29.54 -169.99 -5.02 14.69 16 10 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 11 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 12 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 13 C -0.08 -1.55 2.67 -88.98 -0.24 -1.79 16 14 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 15 C 0.11 2.07 6.94 -3.12 -0.02 2.04 16 16 N -0.73 -12.40 6.24 -59.20 -0.37 -12.77 16 17 C 0.52 9.78 8.43 -10.86 -0.09 9.68 16 18 O -0.56 -12.29 18.03 5.56 0.10 -12.19 16 19 C -0.16 -2.72 5.25 -26.75 -0.14 -2.86 16 20 H 0.02 0.38 8.14 -51.92 -0.42 -0.04 16 21 H 0.06 1.26 7.58 -51.93 -0.39 0.86 16 22 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 23 H 0.03 0.54 6.99 -51.93 -0.36 0.18 16 24 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 25 H 0.26 6.60 8.31 -40.82 -0.34 6.26 16 26 H 0.09 1.75 7.82 -51.93 -0.41 1.34 16 27 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 28 H 0.40 5.81 8.96 -40.82 -0.37 5.44 16 29 H 0.10 1.76 7.73 -51.93 -0.40 1.35 16 30 H 0.09 1.43 8.14 -51.92 -0.42 1.01 16 LS Contribution 250.78 15.07 3.78 3.78 Total: -1.00 -26.99 250.78 -5.93 -32.92 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -4.37 Total: 3.59 kcal Atomic # 6 Polarization: -6.74 SS G_CDS: -0.75 Total: -7.49 kcal Atomic # 7 Polarization: -35.63 SS G_CDS: 0.33 Total: -35.30 kcal Atomic # 8 Polarization: -12.29 SS G_CDS: 0.10 Total: -12.19 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.02 Total: 14.69 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -26.99 -5.93 -32.92 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260711312.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.721 kcal (2) G-P(sol) polarization free energy of solvation -26.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds