Wall clock time and date at job start Mon Mar 30 2020 02:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46397 * 2 1 4 4 H 1.08994 * 109.47636 * 305.51406 * 3 2 1 5 5 C 1.50701 * 109.47118 * 65.51682 * 3 2 1 6 6 H 1.07994 * 120.00195 * 55.48030 * 5 3 2 7 7 C 1.37881 * 119.99709 * 235.48270 * 5 3 2 8 8 N 1.31516 * 119.99980 * 5.78244 * 7 5 3 9 9 Si 1.86796 * 119.99870 * 185.78546 * 7 5 3 10 10 H 1.48500 * 109.47325 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47154 * 120.00010 * 9 7 5 12 12 H 1.48500 * 109.47032 * 239.99969 * 9 7 5 13 13 C 1.53005 * 109.46639 * 185.51256 * 3 2 1 14 14 H 1.09004 * 110.88619 * 296.18883 * 13 3 2 15 15 C 1.54488 * 110.96648 * 172.38132 * 13 3 2 16 16 N 1.46764 * 105.40866 * 216.25619 * 15 13 3 17 17 C 1.34420 * 111.29913 * 17.40361 * 16 15 13 18 18 O 1.21280 * 124.94102 * 179.46075 * 17 16 15 19 19 C 1.51276 * 110.11601 * 359.18895 * 17 16 15 20 20 H 1.09008 * 109.46423 * 174.40502 * 1 2 3 21 21 H 1.08990 * 109.47534 * 294.40377 * 1 2 3 22 22 H 1.08997 * 109.47015 * 54.40971 * 1 2 3 23 23 H 1.08991 * 109.47515 * 240.00393 * 2 1 3 24 24 H 1.08994 * 109.47039 * 119.99472 * 2 1 3 25 25 H 0.96997 * 119.99470 * 180.02562 * 8 7 5 26 26 H 1.09000 * 110.24539 * 335.46698 * 15 13 3 27 27 H 1.08998 * 110.24502 * 97.37762 * 15 13 3 28 28 H 0.96996 * 124.35175 * 197.24083 * 16 15 13 29 29 H 1.09001 * 110.48942 * 102.67330 * 19 17 16 30 30 H 1.09009 * 110.48864 * 225.31753 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5982 1.9841 -0.8364 5 6 1.6521 2.1124 1.2931 6 1 1.9388 1.6720 2.2365 7 6 0.9311 3.2875 1.2715 8 7 0.4842 3.7640 0.1301 9 14 0.5894 4.2029 2.8636 10 1 1.1957 3.4635 3.9997 11 1 1.1778 5.5642 2.7879 12 1 -0.8776 4.3084 3.0688 13 6 3.5636 1.4449 -0.1386 14 1 4.0328 0.9670 0.7215 15 6 4.0988 2.8810 -0.3332 16 7 5.2240 2.7545 -1.2670 17 6 5.1874 1.5799 -1.9196 18 8 5.9919 1.2236 -2.7543 19 6 4.0005 0.7643 -1.4565 20 1 -0.3632 -1.0229 -0.1002 21 1 -0.3634 0.4245 0.9357 22 1 -0.3633 0.5981 -0.8357 23 1 1.8934 -0.5137 -0.8899 24 1 1.8933 -0.5137 0.8900 25 1 -0.0227 4.5908 0.1150 26 1 3.3226 3.5187 -0.7562 27 1 4.4434 3.2872 0.6177 28 1 5.9051 3.4325 -1.3983 29 1 3.1975 0.8073 -2.1924 30 1 4.2958 -0.2688 -1.2726 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260711312.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:16 Heat of formation + Delta-G solvation = -78.741526 kcal Electronic energy + Delta-G solvation = -12884.765553 eV Core-core repulsion = 10678.168574 eV Total energy + Delta-G solvation = -2206.596979 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.16832 -38.06727 -35.99402 -33.70705 -31.77315 -29.21281 -27.32604 -25.44923 -22.31205 -21.33233 -20.73135 -18.64355 -18.17941 -16.83987 -16.33995 -15.84073 -15.09583 -14.69519 -14.46689 -14.15373 -14.03560 -13.81304 -13.12261 -12.84410 -12.74895 -12.33536 -12.17582 -11.98561 -11.71178 -11.26066 -10.98613 -10.75713 -10.52845 -10.41120 -9.98609 -8.01170 -6.05262 1.43652 1.50777 1.57493 1.61591 2.51102 2.56241 3.28308 3.65378 3.92551 4.16776 4.44855 4.65752 4.71116 4.82367 4.89703 4.90908 5.15362 5.23368 5.31384 5.48990 5.52768 5.71915 5.82445 5.88885 5.91282 6.05732 6.11918 6.52458 7.12107 7.32552 7.59328 9.06617 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.036808 B = 0.012222 C = 0.009994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.530756 B = 2290.322801 C = 2801.018864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.108 4.108 3 C 0.037 3.963 4 H 0.043 0.957 5 C -0.503 4.503 6 H 0.049 0.951 7 C 0.030 3.970 8 N -0.919 5.919 9 Si 0.930 3.070 10 H -0.268 1.268 11 H -0.284 1.284 12 H -0.292 1.292 13 C -0.078 4.078 14 H 0.079 0.921 15 C 0.121 3.879 16 N -0.720 5.720 17 C 0.515 3.485 18 O -0.593 6.593 19 C -0.147 4.147 20 H 0.052 0.948 21 H 0.036 0.964 22 H 0.030 0.970 23 H 0.052 0.948 24 H 0.047 0.953 25 H 0.257 0.743 26 H 0.060 0.940 27 H 0.080 0.920 28 H 0.412 0.588 29 H 0.101 0.899 30 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.530 -2.715 0.958 4.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.146 4.146 3 C 0.018 3.982 4 H 0.061 0.939 5 C -0.542 4.542 6 H 0.067 0.933 7 C -0.169 4.169 8 N -0.559 5.559 9 Si 0.757 3.243 10 H -0.192 1.192 11 H -0.210 1.210 12 H -0.219 1.219 13 C -0.098 4.098 14 H 0.098 0.902 15 C -0.003 4.003 16 N -0.373 5.373 17 C 0.303 3.697 18 O -0.475 6.475 19 C -0.186 4.186 20 H 0.071 0.929 21 H 0.055 0.945 22 H 0.049 0.951 23 H 0.071 0.929 24 H 0.066 0.934 25 H 0.067 0.933 26 H 0.079 0.921 27 H 0.099 0.901 28 H 0.250 0.750 29 H 0.119 0.881 30 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 3.737 -2.813 0.511 4.705 hybrid contribution -0.201 1.247 0.777 1.483 sum 3.536 -1.566 1.289 4.077 Atomic orbital electron populations 1.21467 0.97020 0.99177 1.00558 1.21557 0.95401 0.97977 0.99651 1.18980 0.88954 0.92955 0.97330 0.93905 1.21282 1.33212 1.06688 0.92999 0.93305 1.25425 0.95589 0.98372 0.97537 1.70007 1.37947 1.21777 1.26136 0.85949 0.77293 0.78991 0.82028 1.19248 1.21044 1.21858 1.22276 0.99452 0.92936 0.95127 0.90244 1.22012 0.86876 0.99068 0.92340 1.46345 1.29320 1.19170 1.42495 1.21383 0.85990 0.83081 0.79263 1.90653 1.46117 1.75245 1.35524 1.22478 0.95969 1.00612 0.99580 0.92930 0.94464 0.95113 0.92949 0.93394 0.93333 0.92135 0.90126 0.74967 0.88126 0.87290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.74 9.64 71.98 0.69 -4.05 16 2 C -0.11 -4.00 5.26 30.60 0.16 -3.83 16 3 C 0.04 1.55 1.47 -11.54 -0.02 1.53 16 4 H 0.04 2.08 6.83 -2.39 -0.02 2.06 16 5 C -0.50 -23.76 7.01 25.60 0.18 -23.58 16 6 H 0.05 2.32 7.82 -2.91 -0.02 2.30 16 7 C 0.03 1.47 5.45 84.66 0.46 1.93 16 8 N -0.92 -48.39 12.62 21.45 0.27 -48.12 16 9 Si 0.93 40.17 29.54 68.60 2.03 42.20 16 10 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 11 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 12 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 13 C -0.08 -2.80 2.67 -9.73 -0.03 -2.82 16 14 H 0.08 2.71 8.14 -2.39 -0.02 2.70 16 15 C 0.12 4.24 6.94 86.83 0.60 4.84 16 16 N -0.72 -23.04 6.24 -459.80 -2.87 -25.91 16 17 C 0.51 18.51 8.43 87.90 0.74 19.25 16 18 O -0.59 -24.92 18.03 -3.03 -0.05 -24.97 16 19 C -0.15 -4.80 5.25 30.58 0.16 -4.64 16 20 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 21 H 0.04 1.54 7.58 -2.39 -0.02 1.52 16 22 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 23 H 0.05 1.71 6.99 -2.39 -0.02 1.69 16 24 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 25 H 0.26 13.20 8.31 -92.71 -0.77 12.43 16 26 H 0.06 2.47 7.82 -2.39 -0.02 2.45 16 27 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 28 H 0.41 11.22 8.96 -92.71 -0.83 10.39 16 29 H 0.10 3.33 7.73 -2.39 -0.02 3.31 16 30 H 0.11 3.15 8.14 -2.38 -0.02 3.13 16 Total: -1.00 -55.84 250.78 2.62 -53.21 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: 0.29 Total: 14.96 kcal Atomic # 6 Polarization: -14.33 SS G_CDS: 2.96 Total: -11.37 kcal Atomic # 7 Polarization: -71.43 SS G_CDS: -2.60 Total: -74.03 kcal Atomic # 8 Polarization: -24.92 SS G_CDS: -0.05 Total: -24.97 kcal Atomic # 14 Polarization: 40.17 SS G_CDS: 2.03 Total: 42.20 kcal Total: -55.84 2.62 -53.21 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260711312.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.529 kcal (2) G-P(sol) polarization free energy of solvation -55.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds