Wall clock time and date at job start Mon Mar 30 2020 02:31:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50699 * 109.47078 * 240.00207 * 2 1 3 5 5 H 1.08000 * 119.99792 * 239.99917 * 4 2 1 6 6 C 1.37878 * 119.99902 * 59.99463 * 4 2 1 7 7 N 1.31515 * 120.00126 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99745 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47256 * 90.00491 * 8 6 4 10 10 H 1.48506 * 109.46930 * 210.00332 * 8 6 4 11 11 H 1.48499 * 109.47104 * 330.00193 * 8 6 4 12 12 C 1.53000 * 109.47060 * 120.00319 * 2 1 3 13 13 N 1.46506 * 109.46901 * 294.99627 * 12 2 1 14 14 C 1.46762 * 124.34699 * 90.00773 * 13 12 2 15 15 C 1.54480 * 105.47363 * 197.01563 * 14 13 12 16 16 C 1.54629 * 101.76263 * 334.58153 * 15 14 13 17 17 C 1.34417 * 124.34891 * 269.70281 * 13 12 2 18 18 O 1.21280 * 124.94372 * 359.57701 * 17 13 12 19 19 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 20 20 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 21 21 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 22 22 H 0.96999 * 120.00073 * 179.97438 * 7 6 4 23 23 H 1.08990 * 109.47170 * 54.99895 * 12 2 1 24 24 H 1.09001 * 109.46952 * 174.99972 * 12 2 1 25 25 H 1.09009 * 110.24345 * 316.01175 * 14 13 12 26 26 H 1.08996 * 110.24837 * 77.92297 * 14 13 12 27 27 H 1.08999 * 110.96908 * 92.69474 * 15 14 13 28 28 H 1.08998 * 110.97020 * 216.46382 * 15 14 13 29 29 H 1.09003 * 110.48942 * 143.47749 * 16 15 14 30 30 H 1.08996 * 110.48718 * 265.98745 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6991 -0.2393 -2.4827 7 7 0.9433 0.8302 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 1.3426 -2.1616 -4.4119 10 1 2.4864 -0.1413 -5.1123 11 1 3.6292 -1.7582 -3.7122 12 6 2.0400 -0.7213 1.2492 13 7 1.6524 0.0353 2.4424 14 6 0.3980 -0.1636 3.1778 15 6 0.2264 1.1003 4.0493 16 6 1.6898 1.5727 4.2114 17 6 2.4027 0.9969 3.0076 18 8 3.4913 1.3528 2.6089 19 1 -0.3634 0.5137 0.8900 20 1 -0.3635 0.5138 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 0.7092 1.1618 -3.4843 23 1 1.6054 -1.7198 1.2951 24 1 3.1263 -0.7995 1.2055 25 1 -0.4360 -0.2583 2.4824 26 1 0.4664 -1.0509 3.8071 27 1 -0.3711 1.8518 3.5332 28 1 -0.2124 0.8513 5.0155 29 1 1.7423 2.6614 4.2046 30 1 2.1187 1.1768 5.1319 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260997697.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:40 Heat of formation + Delta-G solvation = -66.574215 kcal Electronic energy + Delta-G solvation = -12822.921007 eV Core-core repulsion = 10616.851642 eV Total energy + Delta-G solvation = -2206.069365 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.24289 -37.62220 -36.47247 -33.92655 -31.57386 -28.51543 -27.32318 -26.71917 -22.62240 -22.12940 -20.06224 -18.52131 -17.49908 -17.24205 -16.63501 -16.21103 -15.08703 -14.91295 -14.66074 -14.17190 -13.94860 -13.53996 -13.22653 -13.04672 -12.81850 -12.53672 -12.34384 -12.05806 -11.85044 -11.71861 -11.63831 -10.98542 -10.68383 -10.49765 -9.47592 -8.12527 -6.28950 1.38980 1.40641 1.50914 1.66550 2.25774 2.44621 3.14404 3.52936 3.72052 4.11483 4.29806 4.37234 4.53719 4.68215 4.77383 4.82417 4.89794 4.99136 5.10657 5.17857 5.28341 5.30739 5.53436 5.62774 5.90416 6.10628 6.29976 6.39245 6.82162 7.27890 7.39954 8.91938 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.059423 B = 0.009299 C = 0.008827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.083242 B = 3010.295288 C = 3171.453132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.031 3.969 3 H -0.025 1.025 4 C -0.538 4.538 5 H 0.057 0.943 6 C 0.010 3.990 7 N -0.918 5.918 8 Si 0.960 3.040 9 H -0.268 1.268 10 H -0.285 1.285 11 H -0.270 1.270 12 C 0.142 3.858 13 N -0.614 5.614 14 C 0.085 3.915 15 C -0.117 4.117 16 C -0.142 4.142 17 C 0.487 3.513 18 O -0.603 6.603 19 H 0.038 0.962 20 H 0.048 0.952 21 H 0.036 0.964 22 H 0.261 0.739 23 H 0.087 0.913 24 H 0.043 0.957 25 H 0.082 0.918 26 H 0.094 0.906 27 H 0.079 0.921 28 H 0.131 0.869 29 H 0.104 0.896 30 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.097 -2.360 13.228 14.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.012 3.988 3 H -0.007 1.007 4 C -0.576 4.576 5 H 0.075 0.925 6 C -0.188 4.188 7 N -0.557 5.557 8 Si 0.785 3.215 9 H -0.193 1.193 10 H -0.211 1.211 11 H -0.195 1.195 12 C 0.020 3.980 13 N -0.346 5.346 14 C -0.036 4.036 15 C -0.154 4.154 16 C -0.182 4.182 17 C 0.276 3.724 18 O -0.485 6.485 19 H 0.057 0.943 20 H 0.067 0.933 21 H 0.055 0.945 22 H 0.070 0.930 23 H 0.105 0.895 24 H 0.061 0.939 25 H 0.100 0.900 26 H 0.113 0.887 27 H 0.098 0.902 28 H 0.149 0.851 29 H 0.122 0.878 30 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -4.629 -2.137 12.831 13.807 hybrid contribution 0.570 -0.159 -1.373 1.495 sum -4.059 -2.295 11.458 12.370 Atomic orbital electron populations 1.21647 0.97024 0.99225 0.99884 1.18927 0.94213 0.93625 0.92066 1.00709 1.21472 1.31575 1.12761 0.91827 0.92517 1.25802 0.95186 0.95679 1.02172 1.70045 1.37654 1.24058 1.23989 0.85527 0.78960 0.78350 0.78650 1.19288 1.21051 1.19469 1.21388 0.98355 0.94815 0.83426 1.48619 1.21313 1.37077 1.27564 1.22546 0.85412 1.00322 0.95337 1.22649 0.94630 0.96050 1.02118 1.22347 0.96734 1.03080 0.96050 1.22036 0.84633 0.79587 0.86118 1.90649 1.23671 1.64595 1.69612 0.94313 0.93305 0.94516 0.92982 0.89498 0.93877 0.90024 0.88747 0.90220 0.85119 0.87790 0.85525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.73 8.35 71.98 0.60 -5.12 16 2 C 0.03 1.65 2.51 -11.54 -0.03 1.62 16 3 H -0.03 -1.60 8.14 -2.39 -0.02 -1.62 16 4 C -0.54 -30.81 8.56 25.60 0.22 -30.59 16 5 H 0.06 3.15 7.74 -2.91 -0.02 3.12 16 6 C 0.01 0.59 5.30 84.65 0.45 1.03 16 7 N -0.92 -55.02 11.32 21.45 0.24 -54.78 16 8 Si 0.96 44.77 29.54 68.60 2.03 46.80 16 9 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 10 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 11 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 12 C 0.14 6.23 5.30 86.38 0.46 6.69 16 13 N -0.61 -22.38 2.71 -817.97 -2.21 -24.59 16 14 C 0.09 2.05 6.78 86.83 0.59 2.64 16 15 C -0.12 -2.06 7.18 31.65 0.23 -1.83 16 16 C -0.14 -3.30 6.86 30.59 0.21 -3.09 16 17 C 0.49 18.68 8.02 87.90 0.71 19.39 16 18 O -0.60 -30.03 17.59 -3.03 -0.05 -30.08 16 19 H 0.04 1.58 5.65 -2.39 -0.01 1.56 16 20 H 0.05 2.65 6.07 -2.39 -0.01 2.63 16 21 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 22 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 23 H 0.09 3.36 8.14 -2.39 -0.02 3.34 16 24 H 0.04 2.07 7.92 -2.39 -0.02 2.06 16 25 H 0.08 2.05 5.90 -2.38 -0.01 2.04 16 26 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.13 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 30 H 0.13 2.21 8.14 -2.39 -0.02 2.19 16 Total: -1.00 -74.06 248.05 4.54 -69.52 By element: Atomic # 1 Polarization: 1.28 SS G_CDS: 1.11 Total: 2.39 kcal Atomic # 6 Polarization: -12.69 SS G_CDS: 3.43 Total: -9.26 kcal Atomic # 7 Polarization: -77.39 SS G_CDS: -1.97 Total: -79.36 kcal Atomic # 8 Polarization: -30.03 SS G_CDS: -0.05 Total: -30.08 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -74.06 4.54 -69.52 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260997697.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.945 kcal (2) G-P(sol) polarization free energy of solvation -74.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds