Wall clock time and date at job start Mon Mar 30 2020 02:31:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09003 * 109.47512 * 2 1 4 4 C 1.50702 * 109.47376 * 119.99778 * 2 1 3 5 5 H 1.08004 * 120.00208 * 114.29262 * 4 2 1 6 6 C 1.37881 * 119.99691 * 294.29735 * 4 2 1 7 7 N 1.31520 * 119.99397 * 157.98998 * 6 4 2 8 8 Si 1.86796 * 120.00226 * 337.98863 * 6 4 2 9 9 H 1.48498 * 109.47042 * 269.99810 * 8 6 4 10 10 H 1.48497 * 109.46914 * 29.99973 * 8 6 4 11 11 H 1.48499 * 109.46914 * 150.00132 * 8 6 4 12 12 C 1.52998 * 109.47304 * 239.99887 * 2 1 3 13 13 N 1.46493 * 109.47226 * 64.99653 * 12 2 1 14 14 C 1.46771 * 124.34861 * 90.00319 * 13 12 2 15 15 C 1.54477 * 105.47339 * 197.01686 * 14 13 12 16 16 C 1.54628 * 101.76531 * 334.58241 * 15 14 13 17 17 C 1.34418 * 124.35385 * 269.70401 * 13 12 2 18 18 O 1.21282 * 124.93764 * 359.57653 * 17 13 12 19 19 H 1.08997 * 109.47159 * 52.72271 * 1 2 3 20 20 H 1.08994 * 109.47401 * 172.72807 * 1 2 3 21 21 H 1.09002 * 109.47036 * 292.72319 * 1 2 3 22 22 H 0.96994 * 120.00450 * 354.93312 * 7 6 4 23 23 H 1.08998 * 109.47365 * 185.00305 * 12 2 1 24 24 H 1.09010 * 109.46829 * 304.99771 * 12 2 1 25 25 H 1.08999 * 110.24297 * 316.02168 * 14 13 12 26 26 H 1.09007 * 110.24193 * 77.92606 * 14 13 12 27 27 H 1.08997 * 110.96514 * 92.70675 * 15 14 13 28 28 H 1.08999 * 110.96513 * 216.46428 * 15 14 13 29 29 H 1.09001 * 110.48330 * 143.47331 * 16 15 14 30 30 H 1.08993 * 110.49009 * 265.98652 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.5751 -1.6391 1.1341 6 6 1.7989 -0.1746 2.4793 7 7 1.8305 -0.9478 3.5428 8 14 1.4378 1.6491 2.6607 9 1 2.7108 2.3888 2.8547 10 1 0.7596 2.1436 1.4358 11 1 0.5562 1.8646 3.8361 12 6 2.0399 -0.7213 -1.2492 13 7 1.6524 0.0352 -2.4423 14 6 2.4687 1.0894 -3.0559 15 6 1.5058 1.8745 -3.9740 16 6 0.4289 0.8095 -4.2856 17 6 0.5061 -0.1508 -3.1192 18 8 -0.3438 -0.9679 -2.8346 19 1 -0.3633 0.6224 -0.8177 20 1 -0.3634 -1.0193 -0.1301 21 1 -0.3633 0.3970 0.9479 22 1 1.9448 -1.9058 3.4428 23 1 3.1262 -0.7995 -1.2055 24 1 1.6053 -1.7199 -1.2950 25 1 2.8765 1.7460 -2.2873 26 1 3.2755 0.6488 -3.6417 27 1 1.0725 2.7253 -3.4482 28 1 2.0109 2.1965 -4.8846 29 1 -0.5579 1.2695 -4.3399 30 1 0.6604 0.2942 -5.2177 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260997700.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:42 Heat of formation + Delta-G solvation = -69.816252 kcal Electronic energy + Delta-G solvation = -12920.420324 eV Core-core repulsion = 10714.210374 eV Total energy + Delta-G solvation = -2206.209950 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.28916 -37.51418 -36.67079 -34.15828 -31.93782 -28.38831 -27.45841 -26.44240 -22.73391 -21.71508 -20.14796 -19.63529 -17.61009 -17.31445 -16.49354 -15.73740 -15.15003 -14.94081 -14.75924 -14.51645 -14.02884 -13.80356 -13.48339 -13.07964 -12.69773 -12.41693 -12.30448 -12.13193 -11.93703 -11.68699 -11.50134 -11.07376 -10.72262 -10.40144 -9.58889 -8.75147 -6.37744 1.45929 1.52032 1.66646 1.70914 2.22667 2.49644 3.00778 3.51642 3.71246 4.10501 4.18852 4.30587 4.37005 4.53347 4.69525 4.75037 4.79298 4.90215 4.98459 5.01367 5.12274 5.26445 5.28128 5.56585 5.61959 5.99840 6.08747 6.35771 6.55226 7.26900 7.37033 8.58810 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.049073 B = 0.010840 C = 0.010224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.446096 B = 2582.415410 C = 2737.873981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.007 3.993 3 H 0.037 0.963 4 C -0.609 4.609 5 H 0.021 0.979 6 C -0.015 4.015 7 N -0.933 5.933 8 Si 1.085 2.915 9 H -0.263 1.263 10 H -0.251 1.251 11 H -0.290 1.290 12 C 0.149 3.851 13 N -0.620 5.620 14 C 0.088 3.912 15 C -0.116 4.116 16 C -0.145 4.145 17 C 0.490 3.510 18 O -0.592 6.592 19 H 0.033 0.967 20 H 0.019 0.981 21 H 0.031 0.969 22 H 0.253 0.747 23 H 0.080 0.920 24 H 0.041 0.959 25 H 0.081 0.919 26 H 0.090 0.910 27 H 0.085 0.915 28 H 0.127 0.873 29 H 0.107 0.893 30 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.627 10.018 -16.800 19.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.013 4.013 3 H 0.055 0.945 4 C -0.647 4.647 5 H 0.039 0.961 6 C -0.214 4.214 7 N -0.568 5.568 8 Si 0.906 3.094 9 H -0.188 1.188 10 H -0.175 1.175 11 H -0.216 1.216 12 C 0.026 3.974 13 N -0.352 5.352 14 C -0.033 4.033 15 C -0.153 4.153 16 C -0.185 4.185 17 C 0.280 3.720 18 O -0.473 6.473 19 H 0.052 0.948 20 H 0.038 0.962 21 H 0.050 0.950 22 H 0.062 0.938 23 H 0.098 0.902 24 H 0.059 0.941 25 H 0.100 0.900 26 H 0.109 0.891 27 H 0.104 0.896 28 H 0.146 0.854 29 H 0.125 0.875 30 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 0.981 10.729 -15.488 18.866 hybrid contribution 0.279 -2.235 -0.374 2.283 sum 1.260 8.493 -15.862 18.037 Atomic orbital electron populations 1.21842 0.98604 0.98638 0.98223 1.19311 0.92438 0.96557 0.92962 0.94477 1.22063 1.39992 1.09435 0.93233 0.96083 1.27219 0.92625 1.09665 0.91891 1.70941 1.47083 1.05875 1.32912 0.83521 0.78167 0.70988 0.76745 1.18802 1.17457 1.21587 1.21206 0.99363 0.93604 0.83178 1.48662 1.20753 1.38386 1.27402 1.22437 0.94662 0.88979 0.97256 1.22645 0.94991 0.96572 1.01125 1.22363 1.03104 0.96487 0.96511 1.21951 0.80674 0.84123 0.85247 1.90670 1.43454 1.40349 1.72861 0.94774 0.96164 0.94979 0.93776 0.90173 0.94075 0.90042 0.89141 0.89637 0.85447 0.87499 0.85941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.64 7.51 71.98 0.54 -5.10 16 2 C 0.01 0.35 2.06 -11.54 -0.02 0.33 16 3 H 0.04 1.69 6.52 -2.39 -0.02 1.68 16 4 C -0.61 -35.26 8.78 25.60 0.22 -35.03 16 5 H 0.02 1.32 7.99 -2.91 -0.02 1.30 16 6 C -0.02 -0.89 5.21 84.65 0.44 -0.45 16 7 N -0.93 -59.50 13.70 21.45 0.29 -59.20 16 8 Si 1.09 50.46 26.38 68.60 1.81 52.27 16 9 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 10 H -0.25 -10.54 5.99 99.48 0.60 -9.94 16 11 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 12 C 0.15 6.24 5.32 86.38 0.46 6.70 16 13 N -0.62 -20.66 2.79 -817.97 -2.28 -22.94 16 14 C 0.09 1.87 7.35 86.83 0.64 2.51 16 15 C -0.12 -1.68 7.18 31.65 0.23 -1.45 16 16 C -0.14 -2.92 6.86 30.59 0.21 -2.71 16 17 C 0.49 16.92 6.70 87.90 0.59 17.51 16 18 O -0.59 -26.68 16.61 -3.04 -0.05 -26.73 16 19 H 0.03 1.52 6.80 -2.39 -0.02 1.50 16 20 H 0.02 1.03 8.10 -2.39 -0.02 1.02 16 21 H 0.03 1.57 5.79 -2.39 -0.01 1.55 16 22 H 0.25 16.43 8.73 -92.71 -0.81 15.62 16 23 H 0.08 3.11 8.14 -2.39 -0.02 3.09 16 24 H 0.04 1.94 7.92 -2.38 -0.02 1.92 16 25 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 27 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.13 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.11 1.98 8.14 -2.39 -0.02 1.97 16 30 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -74.88 245.48 4.03 -70.85 By element: Atomic # 1 Polarization: 2.50 SS G_CDS: 0.96 Total: 3.46 kcal Atomic # 6 Polarization: -21.02 SS G_CDS: 3.31 Total: -17.71 kcal Atomic # 7 Polarization: -80.15 SS G_CDS: -1.99 Total: -82.14 kcal Atomic # 8 Polarization: -26.68 SS G_CDS: -0.05 Total: -26.73 kcal Atomic # 14 Polarization: 50.46 SS G_CDS: 1.81 Total: 52.27 kcal Total: -74.88 4.03 -70.85 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260997700.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.035 kcal (2) G-P(sol) polarization free energy of solvation -74.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds