Wall clock time and date at job start Mon Mar 30 2020 02:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46980 * 89.99582 * 8 6 4 10 10 H 1.48493 * 109.47135 * 209.99651 * 8 6 4 11 11 H 1.48498 * 109.47274 * 330.00048 * 8 6 4 12 12 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 13 13 C 1.46766 * 124.35343 * 239.72708 * 12 2 1 14 14 C 1.54663 * 105.38357 * 162.85374 * 13 12 2 15 15 H 1.08995 * 111.22283 * 267.58244 * 14 13 12 16 16 C 1.52996 * 110.82133 * 143.77735 * 14 13 12 17 17 C 1.54636 * 101.68292 * 25.76936 * 14 13 12 18 18 C 1.34421 * 124.34744 * 60.02644 * 12 2 1 19 19 O 1.21282 * 124.94095 * 0.38751 * 18 12 2 20 20 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 22 22 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 23 23 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 24 24 H 1.08998 * 110.24325 * 281.98014 * 13 12 2 25 25 H 1.08997 * 110.24331 * 43.98742 * 13 12 2 26 26 H 1.09005 * 109.47342 * 306.34699 * 16 14 13 27 27 H 1.08997 * 109.47099 * 66.35036 * 16 14 13 28 28 H 1.09003 * 109.47393 * 186.35373 * 16 14 13 29 29 H 1.09003 * 110.48392 * 216.31061 * 17 14 13 30 30 H 1.08993 * 110.48770 * 93.66857 * 17 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.3429 -2.1618 -4.4118 10 1 2.4867 -0.1415 -5.1122 11 1 3.6294 -1.7584 -3.7121 12 7 2.0183 -0.6905 1.1962 13 6 2.8703 -0.0728 2.2192 14 6 2.7605 -0.9949 3.4561 15 1 1.9672 -0.6636 4.1260 16 6 4.0982 -1.0765 4.1940 17 6 2.4041 -2.3514 2.8047 18 6 1.7484 -1.9730 1.4949 19 8 1.0765 -2.7183 0.8137 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 0.5139 0.8900 23 1 0.7089 1.1612 -3.4844 24 1 3.9023 -0.0246 1.8718 25 1 2.5058 0.9255 2.4611 26 1 4.8816 -1.3693 3.4949 27 1 4.3376 -0.1027 4.6210 28 1 4.0285 -1.8159 4.9919 29 1 1.7076 -2.9054 3.4340 30 1 3.3057 -2.9368 2.6249 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261028914.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:30 Heat of formation + Delta-G solvation = -43.507570 kcal Electronic energy + Delta-G solvation = -12955.032915 eV Core-core repulsion = 10749.963795 eV Total energy + Delta-G solvation = -2205.069120 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.59444 -35.76579 -34.42417 -32.03356 -29.36299 -27.60222 -25.33787 -25.02275 -21.57859 -20.36768 -18.30858 -16.63326 -15.60023 -15.46803 -14.45077 -14.14179 -13.51690 -13.32350 -12.87642 -12.41222 -12.36305 -12.08573 -11.62062 -11.34881 -10.96311 -10.78231 -10.69989 -10.62391 -10.41940 -10.26473 -10.01338 -9.23430 -8.65115 -8.29119 -7.52124 -6.00540 -4.04796 3.34773 3.40552 3.44096 3.58846 4.12834 4.50400 4.75839 4.91473 4.98312 5.31078 5.45795 5.58135 5.71657 5.89431 5.98520 6.04832 6.10255 6.15823 6.42959 6.77465 6.98771 7.14599 7.29405 7.76989 7.84865 8.12254 8.16599 8.52885 8.94448 9.26480 9.61611 11.05205 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.048611 B = 0.010598 C = 0.010381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.866727 B = 2641.395826 C = 2696.665579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.277 3.723 3 H 0.043 0.957 4 C -0.508 4.508 5 H 0.058 0.942 6 C 0.061 3.939 7 N -0.896 5.896 8 Si 0.900 3.100 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.275 1.275 12 N -0.602 5.602 13 C 0.106 3.894 14 C -0.107 4.107 15 H 0.084 0.916 16 C -0.139 4.139 17 C -0.155 4.155 18 C 0.510 3.490 19 O -0.531 6.531 20 H 0.044 0.956 21 H 0.092 0.908 22 H 0.006 0.994 23 H 0.262 0.738 24 H 0.064 0.936 25 H 0.068 0.932 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.088 0.912 30 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.778 -0.714 11.261 12.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.178 3.822 3 H 0.061 0.939 4 C -0.546 4.546 5 H 0.077 0.923 6 C -0.140 4.140 7 N -0.536 5.536 8 Si 0.728 3.272 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.200 1.200 12 N -0.335 5.335 13 C -0.018 4.018 14 C -0.126 4.126 15 H 0.103 0.897 16 C -0.196 4.196 17 C -0.196 4.196 18 C 0.295 3.705 19 O -0.409 6.409 20 H 0.064 0.936 21 H 0.110 0.890 22 H 0.025 0.975 23 H 0.072 0.928 24 H 0.082 0.918 25 H 0.086 0.914 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.107 0.893 30 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 4.313 -0.922 10.664 11.540 hybrid contribution 0.341 -0.345 -0.824 0.956 sum 4.654 -1.266 9.840 10.958 Atomic orbital electron populations 1.22108 0.97923 1.00840 1.00150 1.18772 0.91302 0.92140 0.79976 0.93898 1.21317 1.30995 1.12255 0.90068 0.92349 1.24866 0.95135 0.95070 0.98956 1.69866 1.37029 1.23060 1.23619 0.86453 0.79244 0.79300 0.82165 1.20570 1.21250 1.20011 1.48819 1.49129 1.11946 1.23567 1.22077 0.95534 0.96732 0.87492 1.22178 0.98669 0.95281 0.96440 0.89740 1.21747 0.96003 1.01786 1.00104 1.22486 1.02282 0.97976 0.96859 1.20514 0.80800 0.82505 0.86643 1.90658 1.40127 1.54383 1.55682 0.93647 0.88954 0.97467 0.92848 0.91785 0.91355 0.92246 0.92326 0.92414 0.89316 0.88797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.95 8.97 37.16 0.33 -3.62 16 2 C 0.28 7.23 2.86 -69.09 -0.20 7.03 16 3 H 0.04 1.15 8.07 -51.93 -0.42 0.73 16 4 C -0.51 -14.69 8.06 -34.44 -0.28 -14.96 16 5 H 0.06 1.76 7.69 -52.49 -0.40 1.36 16 6 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 7 N -0.90 -25.95 11.32 55.43 0.63 -25.33 16 8 Si 0.90 22.42 29.54 -169.99 -5.02 17.40 16 9 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 N -0.60 -13.26 2.82 -166.05 -0.47 -13.73 16 13 C 0.11 1.72 6.86 -3.02 -0.02 1.70 16 14 C -0.11 -1.38 3.77 -88.89 -0.33 -1.72 16 15 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 16 C -0.14 -1.37 9.12 37.16 0.34 -1.03 16 17 C -0.16 -2.41 6.42 -26.74 -0.17 -2.59 16 18 C 0.51 11.30 7.32 -10.86 -0.08 11.22 16 19 O -0.53 -14.20 15.98 5.56 0.09 -14.11 16 20 H 0.04 1.25 6.80 -51.93 -0.35 0.89 16 21 H 0.09 2.57 6.07 -51.93 -0.32 2.25 16 22 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 23 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 24 H 0.06 1.00 7.85 -51.93 -0.41 0.59 16 25 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 26 H 0.06 0.60 8.08 -51.93 -0.42 0.18 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.09 1.34 7.90 -51.93 -0.41 0.93 16 LS Contribution 249.26 15.07 3.76 3.76 Total: -1.00 -32.25 249.26 -5.92 -38.17 By element: Atomic # 1 Polarization: 0.55 SS G_CDS: -4.40 Total: -3.85 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: -0.50 Total: -2.32 kcal Atomic # 7 Polarization: -39.21 SS G_CDS: 0.16 Total: -39.05 kcal Atomic # 8 Polarization: -14.20 SS G_CDS: 0.09 Total: -14.11 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -32.25 -5.92 -38.17 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261028914.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.334 kcal (2) G-P(sol) polarization free energy of solvation -32.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds