Wall clock time and date at job start Mon Mar 30 2020 02:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46980 * 89.99582 * 8 6 4 10 10 H 1.48493 * 109.47135 * 209.99651 * 8 6 4 11 11 H 1.48498 * 109.47274 * 330.00048 * 8 6 4 12 12 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 13 13 C 1.46766 * 124.35343 * 239.72708 * 12 2 1 14 14 C 1.54663 * 105.38357 * 162.85374 * 13 12 2 15 15 H 1.08995 * 111.22283 * 267.58244 * 14 13 12 16 16 C 1.52996 * 110.82133 * 143.77735 * 14 13 12 17 17 C 1.54636 * 101.68292 * 25.76936 * 14 13 12 18 18 C 1.34421 * 124.34744 * 60.02644 * 12 2 1 19 19 O 1.21282 * 124.94095 * 0.38751 * 18 12 2 20 20 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 22 22 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 23 23 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 24 24 H 1.08998 * 110.24325 * 281.98014 * 13 12 2 25 25 H 1.08997 * 110.24331 * 43.98742 * 13 12 2 26 26 H 1.09005 * 109.47342 * 306.34699 * 16 14 13 27 27 H 1.08997 * 109.47099 * 66.35036 * 16 14 13 28 28 H 1.09003 * 109.47393 * 186.35373 * 16 14 13 29 29 H 1.09003 * 110.48392 * 216.31061 * 17 14 13 30 30 H 1.08993 * 110.48770 * 93.66857 * 17 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.3429 -2.1618 -4.4118 10 1 2.4867 -0.1415 -5.1122 11 1 3.6294 -1.7584 -3.7121 12 7 2.0183 -0.6905 1.1962 13 6 2.8703 -0.0728 2.2192 14 6 2.7605 -0.9949 3.4561 15 1 1.9672 -0.6636 4.1260 16 6 4.0982 -1.0765 4.1940 17 6 2.4041 -2.3514 2.8047 18 6 1.7484 -1.9730 1.4949 19 8 1.0765 -2.7183 0.8137 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 0.5139 0.8900 23 1 0.7089 1.1612 -3.4844 24 1 3.9023 -0.0246 1.8718 25 1 2.5058 0.9255 2.4611 26 1 4.8816 -1.3693 3.4949 27 1 4.3376 -0.1027 4.6210 28 1 4.0285 -1.8159 4.9919 29 1 1.7076 -2.9054 3.4340 30 1 3.3057 -2.9368 2.6249 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261028914.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:30 Heat of formation + Delta-G solvation = -64.810582 kcal Electronic energy + Delta-G solvation = -12955.956683 eV Core-core repulsion = 10749.963795 eV Total energy + Delta-G solvation = -2205.992888 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.17632 -37.39556 -36.32379 -33.86292 -31.07416 -28.98778 -27.34531 -26.49580 -23.50014 -21.49910 -20.09653 -18.56224 -17.41316 -17.04337 -16.32234 -15.83975 -15.00095 -14.80601 -14.56831 -14.00799 -13.66535 -13.47156 -13.29439 -13.03889 -12.78785 -12.71496 -12.43445 -12.27975 -12.03230 -11.76957 -11.64720 -11.25990 -10.67313 -10.26954 -9.31993 -8.18923 -6.31103 1.33985 1.37451 1.46218 1.89957 2.33826 2.57729 3.08113 3.61428 3.63112 3.96688 4.31202 4.62870 4.65835 4.70843 4.74840 4.83573 4.90806 4.98780 5.05095 5.16413 5.26559 5.32823 5.51690 5.57658 5.77410 6.08302 6.12781 6.66365 6.78794 7.31519 7.59263 8.85007 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.048611 B = 0.010598 C = 0.010381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.866727 B = 2641.395826 C = 2696.665579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.277 3.723 3 H 0.034 0.966 4 C -0.528 4.528 5 H 0.036 0.964 6 C 0.017 3.983 7 N -0.914 5.914 8 Si 0.958 3.042 9 H -0.283 1.283 10 H -0.270 1.270 11 H -0.273 1.273 12 N -0.612 5.612 13 C 0.095 3.905 14 C -0.088 4.088 15 H 0.102 0.898 16 C -0.133 4.133 17 C -0.142 4.142 18 C 0.489 3.511 19 O -0.592 6.592 20 H 0.020 0.980 21 H 0.071 0.929 22 H 0.030 0.970 23 H 0.266 0.734 24 H 0.070 0.930 25 H 0.081 0.919 26 H 0.055 0.945 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.109 0.891 30 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.991 -0.616 12.847 14.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.176 3.824 3 H 0.052 0.948 4 C -0.567 4.567 5 H 0.054 0.946 6 C -0.183 4.183 7 N -0.554 5.554 8 Si 0.783 3.217 9 H -0.210 1.210 10 H -0.195 1.195 11 H -0.197 1.197 12 N -0.344 5.344 13 C -0.027 4.027 14 C -0.107 4.107 15 H 0.120 0.880 16 C -0.190 4.190 17 C -0.182 4.182 18 C 0.277 3.723 19 O -0.473 6.473 20 H 0.039 0.961 21 H 0.090 0.910 22 H 0.049 0.951 23 H 0.075 0.925 24 H 0.088 0.912 25 H 0.100 0.900 26 H 0.074 0.926 27 H 0.094 0.906 28 H 0.096 0.904 29 H 0.127 0.873 30 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 5.558 -0.793 12.292 13.514 hybrid contribution -0.047 -0.342 -1.304 1.349 sum 5.511 -1.135 10.989 12.345 Atomic orbital electron populations 1.21896 0.98283 0.99106 1.00257 1.18466 0.91067 0.91695 0.81189 0.94827 1.21468 1.31388 1.11906 0.91925 0.94570 1.25596 0.95297 0.95803 1.01555 1.69943 1.37253 1.23701 1.24459 0.85570 0.78540 0.78405 0.79183 1.20951 1.19451 1.19745 1.48873 1.49546 1.12487 1.23456 1.22461 0.94764 0.98013 0.87497 1.22206 1.01226 0.92194 0.95089 0.87983 1.21732 0.93620 1.03513 1.00175 1.22480 1.02594 0.99926 0.93169 1.21734 0.80093 0.81982 0.88461 1.90608 1.42764 1.55825 1.58110 0.96092 0.91014 0.95069 0.92456 0.91202 0.90024 0.92569 0.90622 0.90393 0.87286 0.87196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.28 8.97 71.98 0.65 -6.64 16 2 C 0.28 14.70 2.86 44.24 0.13 14.83 16 3 H 0.03 1.83 8.07 -2.39 -0.02 1.81 16 4 C -0.53 -31.33 8.06 25.60 0.21 -31.12 16 5 H 0.04 2.25 7.69 -2.91 -0.02 2.23 16 6 C 0.02 0.97 5.30 84.66 0.45 1.42 16 7 N -0.91 -53.50 11.32 21.45 0.24 -53.25 16 8 Si 0.96 46.40 29.54 68.60 2.03 48.43 16 9 H -0.28 -13.84 7.11 99.48 0.71 -13.13 16 10 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 11 H -0.27 -12.99 7.11 99.48 0.71 -12.28 16 12 N -0.61 -26.86 2.82 -797.85 -2.25 -29.11 16 13 C 0.10 2.90 6.86 86.90 0.60 3.49 16 14 C -0.09 -1.96 3.77 -9.67 -0.04 -2.00 16 15 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 16 C -0.13 -2.02 9.12 71.98 0.66 -1.36 16 17 C -0.14 -4.04 6.42 30.59 0.20 -3.84 16 18 C 0.49 21.65 7.32 87.90 0.64 22.30 16 19 O -0.59 -32.56 15.98 -3.03 -0.05 -32.61 16 20 H 0.02 1.16 6.80 -2.39 -0.02 1.15 16 21 H 0.07 4.08 6.07 -2.39 -0.01 4.07 16 22 H 0.03 1.44 8.14 -2.38 -0.02 1.42 16 23 H 0.27 14.68 8.31 -92.71 -0.77 13.91 16 24 H 0.07 2.05 7.85 -2.39 -0.02 2.03 16 25 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 26 H 0.06 0.91 8.08 -2.38 -0.02 0.89 16 27 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.11 2.70 8.14 -2.39 -0.02 2.68 16 30 H 0.11 2.81 7.90 -2.39 -0.02 2.79 16 Total: -1.00 -71.98 249.26 4.56 -67.42 By element: Atomic # 1 Polarization: 0.94 SS G_CDS: 1.10 Total: 2.05 kcal Atomic # 6 Polarization: -6.40 SS G_CDS: 3.48 Total: -2.92 kcal Atomic # 7 Polarization: -80.35 SS G_CDS: -2.01 Total: -82.36 kcal Atomic # 8 Polarization: -32.56 SS G_CDS: -0.05 Total: -32.61 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.43 kcal Total: -71.98 4.56 -67.42 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261028914.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.611 kcal (2) G-P(sol) polarization free energy of solvation -71.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds