Wall clock time and date at job start Mon Mar 30 2020 02:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09002 * 109.46837 * 2 1 4 4 C 1.50699 * 109.46976 * 239.99135 * 2 1 3 5 5 H 1.07995 * 120.00219 * 275.19948 * 4 2 1 6 6 C 1.37876 * 119.99551 * 95.20038 * 4 2 1 7 7 N 1.31515 * 119.99818 * 174.95067 * 6 4 2 8 8 Si 1.86799 * 120.00247 * 354.67970 * 6 4 2 9 9 H 1.48497 * 109.47414 * 94.84667 * 8 6 4 10 10 H 1.48501 * 109.46965 * 214.84841 * 8 6 4 11 11 H 1.48504 * 109.47149 * 334.84547 * 8 6 4 12 12 N 1.46505 * 109.46720 * 119.99115 * 2 1 3 13 13 C 1.46756 * 124.35017 * 239.72405 * 12 2 1 14 14 C 1.54661 * 105.38380 * 162.86147 * 13 12 2 15 15 H 1.08996 * 110.85596 * 143.78960 * 14 13 12 16 16 C 1.53003 * 111.18899 * 267.59251 * 14 13 12 17 17 C 1.54629 * 101.68549 * 25.76387 * 14 13 12 18 18 C 1.34421 * 124.34453 * 60.02992 * 12 2 1 19 19 O 1.21277 * 124.94869 * 0.38234 * 18 12 2 20 20 H 1.08994 * 109.46880 * 174.91402 * 1 2 3 21 21 H 1.08999 * 109.46847 * 294.91129 * 1 2 3 22 22 H 1.08993 * 109.46899 * 54.91237 * 1 2 3 23 23 H 0.96998 * 120.00038 * 180.02562 * 7 6 4 24 24 H 1.09003 * 110.24841 * 281.98928 * 13 12 2 25 25 H 1.08998 * 110.24771 * 43.98350 * 13 12 2 26 26 H 1.08999 * 109.46812 * 173.85808 * 16 14 13 27 27 H 1.09001 * 109.47523 * 293.85912 * 16 14 13 28 28 H 1.09000 * 109.47205 * 53.86206 * 16 14 13 29 29 H 1.09000 * 110.48799 * 216.31315 * 17 14 13 30 30 H 1.08999 * 110.48425 * 93.66302 * 17 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7106 -1.2304 5 1 2.1325 -1.7859 -1.2299 6 6 2.3642 0.0122 -2.3566 7 7 2.8956 -0.5954 -3.3949 8 14 2.0520 1.8531 -2.4106 9 1 3.2859 2.5764 -2.0114 10 1 1.6697 2.2501 -3.7896 11 1 0.9520 2.1963 -1.4739 12 7 2.0183 -0.6905 1.1963 13 6 2.8703 -0.0727 2.2193 14 6 2.7605 -0.9947 3.4561 15 1 3.7132 -1.0530 3.9824 16 6 1.6466 -0.5290 4.3960 17 6 2.4041 -2.3512 2.8049 18 6 1.7484 -1.9729 1.4950 19 8 1.0766 -2.7183 0.8139 20 1 -0.3633 -1.0236 -0.0911 21 1 -0.3633 0.4329 0.9321 22 1 -0.3633 0.5907 -0.8409 23 1 3.1293 -0.0868 -4.1872 24 1 3.9023 -0.0244 1.8718 25 1 2.5059 0.9257 2.4609 26 1 1.5208 -1.2558 5.1985 27 1 1.9108 0.4394 4.8209 28 1 0.7145 -0.4389 3.8381 29 1 1.7075 -2.9052 3.4343 30 1 3.3058 -2.9366 2.6251 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261028917.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:32 Heat of formation + Delta-G solvation = -41.904032 kcal Electronic energy + Delta-G solvation = -13057.672170 eV Core-core repulsion = 10852.672585 eV Total energy + Delta-G solvation = -2204.999585 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.72731 -35.81080 -34.44414 -32.02514 -29.88460 -27.70782 -25.64940 -25.16921 -21.54160 -20.38511 -18.23878 -16.90948 -15.93271 -15.50761 -14.50493 -14.04110 -13.65007 -13.29286 -12.98293 -12.59763 -12.52455 -12.14580 -12.08767 -11.43194 -11.28751 -11.00533 -10.80881 -10.66355 -10.54191 -10.44171 -9.77895 -9.40870 -8.61221 -8.58001 -7.58229 -6.09593 -4.08864 3.21026 3.31722 3.32135 3.54010 4.01405 4.35689 4.70759 4.84996 5.01095 5.27043 5.36282 5.59290 5.70415 5.90076 5.96143 6.05102 6.07220 6.11518 6.29337 6.39132 6.50083 6.68548 6.79519 7.30793 7.60676 7.62709 8.21837 8.56704 9.07773 9.18637 9.52105 11.03633 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.045958 B = 0.012212 C = 0.011300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.100099 B = 2292.353616 C = 2477.275078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.247 3.753 3 H 0.043 0.957 4 C -0.515 4.515 5 H 0.085 0.915 6 C 0.073 3.927 7 N -0.892 5.892 8 Si 0.869 3.131 9 H -0.277 1.277 10 H -0.284 1.284 11 H -0.261 1.261 12 N -0.597 5.597 13 C 0.103 3.897 14 C -0.106 4.106 15 H 0.089 0.911 16 C -0.142 4.142 17 C -0.155 4.155 18 C 0.514 3.486 19 O -0.533 6.533 20 H 0.063 0.937 21 H 0.022 0.978 22 H 0.053 0.947 23 H 0.264 0.736 24 H 0.066 0.934 25 H 0.068 0.932 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.090 0.910 30 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.162 3.408 13.925 14.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.147 3.853 3 H 0.061 0.939 4 C -0.553 4.553 5 H 0.103 0.897 6 C -0.130 4.130 7 N -0.530 5.530 8 Si 0.696 3.304 9 H -0.203 1.203 10 H -0.210 1.210 11 H -0.185 1.185 12 N -0.331 5.331 13 C -0.021 4.021 14 C -0.124 4.124 15 H 0.107 0.893 16 C -0.199 4.199 17 C -0.196 4.196 18 C 0.300 3.700 19 O -0.410 6.410 20 H 0.082 0.918 21 H 0.041 0.959 22 H 0.071 0.929 23 H 0.074 0.926 24 H 0.084 0.916 25 H 0.087 0.913 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.109 0.891 30 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.163 3.107 13.279 13.639 hybrid contribution 0.047 1.074 -0.223 1.098 sum -0.116 4.181 13.056 13.709 Atomic orbital electron populations 1.22280 0.98237 1.02142 0.98469 1.19084 0.90958 0.92247 0.83026 0.93931 1.21274 1.42689 0.96535 0.94843 0.89703 1.25011 0.94190 0.98063 0.95737 1.69914 1.41596 1.36255 1.05252 0.86997 0.79175 0.86296 0.77934 1.20292 1.20996 1.18531 1.48823 1.49283 1.11998 1.22980 1.22101 0.95710 0.96705 0.87578 1.22165 0.99839 0.94805 0.95633 0.89302 1.21781 0.98520 1.00907 0.98678 1.22475 1.02443 0.97884 0.96777 1.20501 0.80597 0.82288 0.86592 1.90661 1.40348 1.54291 1.55679 0.91804 0.95920 0.92850 0.92564 0.91590 0.91335 0.92432 0.92379 0.92369 0.89117 0.88637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.50 8.93 37.16 0.33 -3.17 16 2 C 0.25 5.99 2.40 -69.08 -0.17 5.83 16 3 H 0.04 1.00 5.53 -51.93 -0.29 0.71 16 4 C -0.51 -15.02 8.67 -34.44 -0.30 -15.32 16 5 H 0.08 2.85 7.18 -52.49 -0.38 2.47 16 6 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 7 N -0.89 -27.67 13.96 55.43 0.77 -26.90 16 8 Si 0.87 20.98 26.60 -169.99 -4.52 16.46 16 9 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.26 -5.92 5.98 56.52 0.34 -5.58 16 12 N -0.60 -12.68 2.82 -166.04 -0.47 -13.15 16 13 C 0.10 1.62 6.87 -3.03 -0.02 1.60 16 14 C -0.11 -1.31 3.75 -88.89 -0.33 -1.65 16 15 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 16 C -0.14 -1.55 9.14 37.16 0.34 -1.21 16 17 C -0.16 -2.36 6.41 -26.74 -0.17 -2.53 16 18 C 0.51 11.12 7.35 -10.86 -0.08 11.04 16 19 O -0.53 -13.95 15.55 5.56 0.09 -13.86 16 20 H 0.06 1.58 6.97 -51.93 -0.36 1.22 16 21 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 22 H 0.05 1.20 6.99 -51.93 -0.36 0.84 16 23 H 0.26 7.61 8.31 -40.82 -0.34 7.28 16 24 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 25 H 0.07 0.97 7.92 -51.93 -0.41 0.55 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.09 1.24 7.91 -51.93 -0.41 0.83 16 30 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 245.91 15.07 3.71 3.71 Total: -1.00 -33.54 245.91 -5.29 -38.83 By element: Atomic # 1 Polarization: 2.68 SS G_CDS: -4.37 Total: -1.69 kcal Atomic # 6 Polarization: -2.90 SS G_CDS: -0.50 Total: -3.39 kcal Atomic # 7 Polarization: -40.35 SS G_CDS: 0.30 Total: -40.05 kcal Atomic # 8 Polarization: -13.95 SS G_CDS: 0.09 Total: -13.86 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.52 Total: 16.46 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -33.54 -5.29 -38.83 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261028917.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.073 kcal (2) G-P(sol) polarization free energy of solvation -33.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds