Wall clock time and date at job start Mon Mar 30 2020 02:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09002 * 109.46837 * 2 1 4 4 C 1.50699 * 109.46976 * 239.99135 * 2 1 3 5 5 H 1.07995 * 120.00219 * 275.19948 * 4 2 1 6 6 C 1.37876 * 119.99551 * 95.20038 * 4 2 1 7 7 N 1.31515 * 119.99818 * 174.95067 * 6 4 2 8 8 Si 1.86799 * 120.00247 * 354.67970 * 6 4 2 9 9 H 1.48497 * 109.47414 * 94.84667 * 8 6 4 10 10 H 1.48501 * 109.46965 * 214.84841 * 8 6 4 11 11 H 1.48504 * 109.47149 * 334.84547 * 8 6 4 12 12 N 1.46505 * 109.46720 * 119.99115 * 2 1 3 13 13 C 1.46756 * 124.35017 * 239.72405 * 12 2 1 14 14 C 1.54661 * 105.38380 * 162.86147 * 13 12 2 15 15 H 1.08996 * 110.85596 * 143.78960 * 14 13 12 16 16 C 1.53003 * 111.18899 * 267.59251 * 14 13 12 17 17 C 1.54629 * 101.68549 * 25.76387 * 14 13 12 18 18 C 1.34421 * 124.34453 * 60.02992 * 12 2 1 19 19 O 1.21277 * 124.94869 * 0.38234 * 18 12 2 20 20 H 1.08994 * 109.46880 * 174.91402 * 1 2 3 21 21 H 1.08999 * 109.46847 * 294.91129 * 1 2 3 22 22 H 1.08993 * 109.46899 * 54.91237 * 1 2 3 23 23 H 0.96998 * 120.00038 * 180.02562 * 7 6 4 24 24 H 1.09003 * 110.24841 * 281.98928 * 13 12 2 25 25 H 1.08998 * 110.24771 * 43.98350 * 13 12 2 26 26 H 1.08999 * 109.46812 * 173.85808 * 16 14 13 27 27 H 1.09001 * 109.47523 * 293.85912 * 16 14 13 28 28 H 1.09000 * 109.47205 * 53.86206 * 16 14 13 29 29 H 1.09000 * 110.48799 * 216.31315 * 17 14 13 30 30 H 1.08999 * 110.48425 * 93.66302 * 17 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7106 -1.2304 5 1 2.1325 -1.7859 -1.2299 6 6 2.3642 0.0122 -2.3566 7 7 2.8956 -0.5954 -3.3949 8 14 2.0520 1.8531 -2.4106 9 1 3.2859 2.5764 -2.0114 10 1 1.6697 2.2501 -3.7896 11 1 0.9520 2.1963 -1.4739 12 7 2.0183 -0.6905 1.1963 13 6 2.8703 -0.0727 2.2193 14 6 2.7605 -0.9947 3.4561 15 1 3.7132 -1.0530 3.9824 16 6 1.6466 -0.5290 4.3960 17 6 2.4041 -2.3512 2.8049 18 6 1.7484 -1.9729 1.4950 19 8 1.0766 -2.7183 0.8139 20 1 -0.3633 -1.0236 -0.0911 21 1 -0.3633 0.4329 0.9321 22 1 -0.3633 0.5907 -0.8409 23 1 3.1293 -0.0868 -4.1872 24 1 3.9023 -0.0244 1.8718 25 1 2.5059 0.9257 2.4609 26 1 1.5208 -1.2558 5.1985 27 1 1.9108 0.4394 4.8209 28 1 0.7145 -0.4389 3.8381 29 1 1.7075 -2.9052 3.4343 30 1 3.3058 -2.9366 2.6251 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261028917.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:32 Heat of formation + Delta-G solvation = -66.254002 kcal Electronic energy + Delta-G solvation = -13058.728064 eV Core-core repulsion = 10852.672585 eV Total energy + Delta-G solvation = -2206.055479 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.25561 -37.42908 -36.23828 -34.02667 -31.46725 -29.00438 -27.31378 -26.84810 -23.37417 -21.53639 -20.00677 -18.96543 -17.59447 -16.97694 -16.17046 -15.78813 -15.05642 -14.64526 -14.56117 -14.43947 -14.02678 -13.86525 -13.44722 -13.09984 -12.84165 -12.55396 -12.45344 -12.04381 -11.83778 -11.76683 -11.74113 -11.40241 -10.80152 -10.34597 -9.30392 -8.32894 -6.40429 1.31990 1.35858 1.47628 1.88799 2.30830 2.43429 3.08597 3.59314 3.61226 4.02242 4.20271 4.36668 4.64318 4.67066 4.69840 4.74027 4.81138 4.87849 4.94688 5.02081 5.13397 5.25000 5.44587 5.49142 5.52962 5.85103 6.32142 6.67181 6.69559 7.21898 7.55125 8.85274 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.045958 B = 0.012212 C = 0.011300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.100099 B = 2292.353616 C = 2477.275078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.246 3.754 3 H 0.063 0.937 4 C -0.526 4.526 5 H 0.017 0.983 6 C 0.008 3.992 7 N -0.949 5.949 8 Si 0.949 3.051 9 H -0.258 1.258 10 H -0.284 1.284 11 H -0.232 1.232 12 N -0.608 5.608 13 C 0.091 3.909 14 C -0.087 4.087 15 H 0.129 0.871 16 C -0.140 4.140 17 C -0.145 4.145 18 C 0.491 3.509 19 O -0.597 6.597 20 H 0.030 0.970 21 H 0.056 0.944 22 H 0.056 0.944 23 H 0.268 0.732 24 H 0.069 0.931 25 H 0.093 0.907 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.033 0.967 29 H 0.109 0.891 30 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.534 6.132 16.806 17.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.144 3.856 3 H 0.081 0.919 4 C -0.565 4.565 5 H 0.036 0.964 6 C -0.189 4.189 7 N -0.589 5.589 8 Si 0.770 3.230 9 H -0.183 1.183 10 H -0.210 1.210 11 H -0.155 1.155 12 N -0.339 5.339 13 C -0.031 4.031 14 C -0.105 4.105 15 H 0.147 0.853 16 C -0.197 4.197 17 C -0.185 4.185 18 C 0.280 3.720 19 O -0.479 6.479 20 H 0.049 0.951 21 H 0.075 0.925 22 H 0.075 0.925 23 H 0.077 0.923 24 H 0.087 0.913 25 H 0.111 0.889 26 H 0.095 0.905 27 H 0.099 0.901 28 H 0.053 0.947 29 H 0.127 0.873 30 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 0.231 5.844 16.224 17.246 hybrid contribution -0.039 0.106 -1.125 1.130 sum 0.191 5.950 15.100 16.231 Atomic orbital electron populations 1.22147 0.97373 1.00500 1.00357 1.18912 0.91671 0.92634 0.82355 0.91900 1.21387 1.43405 0.93779 0.97920 0.96432 1.26096 0.93451 1.04703 0.94687 1.70101 1.43398 1.39056 1.06334 0.85736 0.80574 0.78090 0.78558 1.18263 1.20992 1.15489 1.48839 1.49646 1.12422 1.23043 1.22519 0.94833 0.98394 0.87394 1.22235 1.02395 0.91418 0.94460 0.85339 1.21799 0.96632 1.02766 0.98468 1.22489 1.02527 1.00167 0.93318 1.21721 0.79923 0.82006 0.88356 1.90615 1.43165 1.55901 1.58177 0.95054 0.92508 0.92523 0.92301 0.91306 0.88891 0.90518 0.90088 0.94729 0.87312 0.87502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.57 8.93 71.99 0.64 -5.93 16 2 C 0.25 11.83 2.40 44.25 0.11 11.94 16 3 H 0.06 2.76 5.53 -2.39 -0.01 2.74 16 4 C -0.53 -31.98 8.67 25.60 0.22 -31.76 16 5 H 0.02 1.26 7.18 -2.91 -0.02 1.24 16 6 C 0.01 0.48 5.47 84.65 0.46 0.94 16 7 N -0.95 -61.31 13.96 21.45 0.30 -61.02 16 8 Si 0.95 42.77 26.60 68.60 1.83 44.59 16 9 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 10 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 11 H -0.23 -9.30 5.98 99.48 0.59 -8.71 16 12 N -0.61 -25.35 2.82 -797.82 -2.25 -27.60 16 13 C 0.09 2.55 6.87 86.90 0.60 3.15 16 14 C -0.09 -1.78 3.75 -9.67 -0.04 -1.82 16 15 H 0.13 1.76 8.14 -2.39 -0.02 1.74 16 16 C -0.14 -2.39 9.14 71.98 0.66 -1.74 16 17 C -0.14 -4.11 6.41 30.59 0.20 -3.91 16 18 C 0.49 21.55 7.35 87.90 0.65 22.20 16 19 O -0.60 -33.15 15.55 -3.02 -0.05 -33.20 16 20 H 0.03 1.58 6.97 -2.39 -0.02 1.57 16 21 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 22 H 0.06 2.46 6.99 -2.39 -0.02 2.44 16 23 H 0.27 15.96 8.31 -92.71 -0.77 15.19 16 24 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 25 H 0.09 2.18 7.92 -2.39 -0.02 2.16 16 26 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.11 2.70 7.91 -2.39 -0.02 2.68 16 30 H 0.11 2.80 8.14 -2.39 -0.02 2.78 16 Total: -1.00 -79.96 245.91 4.32 -75.64 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: 1.00 Total: 8.50 kcal Atomic # 6 Polarization: -10.42 SS G_CDS: 3.49 Total: -6.93 kcal Atomic # 7 Polarization: -86.66 SS G_CDS: -1.95 Total: -88.61 kcal Atomic # 8 Polarization: -33.15 SS G_CDS: -0.05 Total: -33.20 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 1.83 Total: 44.59 kcal Total: -79.96 4.32 -75.64 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261028917.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.389 kcal (2) G-P(sol) polarization free energy of solvation -79.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds