Wall clock time and date at job start Mon Mar 30 2020 02:25:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09006 * 109.46930 * 2 1 4 4 C 1.50700 * 109.47749 * 120.00398 * 2 1 3 5 5 H 1.08002 * 119.99982 * 114.35849 * 4 2 1 6 6 C 1.37880 * 119.99985 * 294.36837 * 4 2 1 7 7 N 1.31506 * 120.00289 * 157.07354 * 6 4 2 8 8 Si 1.86800 * 119.99805 * 337.06570 * 6 4 2 9 9 H 1.48492 * 109.47233 * 180.02562 * 8 6 4 10 10 H 1.48503 * 109.47106 * 60.00147 * 8 6 4 11 11 H 1.48502 * 109.47208 * 300.00913 * 8 6 4 12 12 N 1.46507 * 109.47142 * 240.00928 * 2 1 3 13 13 C 1.46760 * 124.34953 * 119.72281 * 12 2 1 14 14 C 1.54663 * 105.37996 * 162.85580 * 13 12 2 15 15 H 1.08996 * 110.82436 * 143.77626 * 14 13 12 16 16 C 1.53003 * 111.19011 * 267.59098 * 14 13 12 17 17 C 1.54630 * 101.68544 * 25.76333 * 14 13 12 18 18 C 1.34419 * 124.34536 * 300.01808 * 12 2 1 19 19 O 1.21282 * 124.94400 * 0.43691 * 18 12 2 20 20 H 1.08998 * 109.47792 * 53.36736 * 1 2 3 21 21 H 1.09004 * 109.47343 * 173.37478 * 1 2 3 22 22 H 1.09007 * 109.46930 * 293.36963 * 1 2 3 23 23 H 0.97007 * 119.99816 * 354.91948 * 7 6 4 24 24 H 1.08999 * 110.24721 * 281.97815 * 13 12 2 25 25 H 1.08996 * 110.25163 * 43.98535 * 13 12 2 26 26 H 1.09003 * 109.46743 * 173.85852 * 16 14 13 27 27 H 1.08996 * 109.47187 * 293.86036 * 16 14 13 28 28 H 1.09000 * 109.46959 * 53.86511 * 16 14 13 29 29 H 1.09005 * 110.48969 * 216.30918 * 17 14 13 30 30 H 1.08996 * 110.48667 * 93.66548 * 17 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.5762 -1.6386 1.1338 6 6 1.7978 -0.1757 2.4794 7 7 1.8118 -0.9524 3.5405 8 14 1.4603 1.6522 2.6643 9 1 1.2424 1.9728 4.0978 10 1 0.2480 2.0130 1.8861 11 1 2.6225 2.4242 2.1559 12 7 2.0183 -0.6904 -1.1963 13 6 2.8607 -0.0692 -2.2251 14 6 3.4724 -1.2464 -3.0202 15 1 3.5565 -0.9973 -4.0779 16 6 4.8306 -1.6548 -2.4463 17 6 2.4200 -2.3567 -2.7951 18 6 1.7476 -1.9727 -1.4955 19 8 1.0634 -2.7136 -0.8220 20 1 -0.3634 0.6132 -0.8246 21 1 -0.3634 -1.0208 -0.1186 22 1 -0.3633 0.4077 0.9434 23 1 1.9137 -1.9116 3.4381 24 1 2.2557 0.5578 -2.8800 25 1 3.6503 0.5211 -1.7602 26 1 5.1851 -2.5515 -2.9548 27 1 5.5460 -0.8460 -2.5950 28 1 4.7284 -1.8582 -1.3803 29 1 2.9048 -3.3285 -2.7011 30 1 1.6966 -2.3676 -3.6103 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261028921.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:36 Heat of formation + Delta-G solvation = -42.241357 kcal Electronic energy + Delta-G solvation = -13101.770058 eV Core-core repulsion = 10896.755845 eV Total energy + Delta-G solvation = -2205.014213 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.76340 -35.83933 -34.49789 -32.05507 -29.70777 -27.73800 -25.69254 -24.65641 -21.48705 -20.38845 -18.31146 -17.25406 -16.06264 -15.32654 -14.50394 -13.91417 -13.71353 -13.19473 -13.03348 -12.73107 -12.54960 -12.12892 -11.69401 -11.55052 -11.21218 -10.96499 -10.82263 -10.67900 -10.45314 -10.14772 -9.80311 -9.11020 -8.72146 -8.19764 -7.70475 -6.40830 -3.99909 3.38790 3.40809 3.48118 3.58596 4.01936 4.50830 4.69117 4.81939 5.00681 5.22727 5.36391 5.61964 5.72577 5.87838 5.92673 6.01324 6.10033 6.14405 6.35839 6.46247 6.56017 6.71755 6.80771 7.33028 7.63332 7.92378 8.31627 8.45768 8.95164 9.18161 9.65816 10.94180 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.043352 B = 0.012325 C = 0.011909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.721931 B = 2271.245265 C = 2350.553241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.258 3.742 3 H 0.033 0.967 4 C -0.603 4.603 5 H 0.060 0.940 6 C 0.036 3.964 7 N -0.896 5.896 8 Si 1.034 2.966 9 H -0.283 1.283 10 H -0.277 1.277 11 H -0.283 1.283 12 N -0.597 5.597 13 C 0.104 3.896 14 C -0.103 4.103 15 H 0.087 0.913 16 C -0.144 4.144 17 C -0.156 4.156 18 C 0.512 3.488 19 O -0.529 6.529 20 H 0.020 0.980 21 H 0.060 0.940 22 H 0.059 0.941 23 H 0.271 0.729 24 H 0.060 0.940 25 H 0.074 0.926 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.092 0.908 30 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.412 3.144 -13.412 14.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.157 3.843 3 H 0.050 0.950 4 C -0.641 4.641 5 H 0.079 0.921 6 C -0.170 4.170 7 N -0.529 5.529 8 Si 0.862 3.138 9 H -0.208 1.208 10 H -0.203 1.203 11 H -0.209 1.209 12 N -0.330 5.330 13 C -0.021 4.021 14 C -0.122 4.122 15 H 0.106 0.894 16 C -0.201 4.201 17 C -0.196 4.196 18 C 0.298 3.702 19 O -0.405 6.405 20 H 0.039 0.961 21 H 0.079 0.921 22 H 0.078 0.922 23 H 0.081 0.919 24 H 0.078 0.922 25 H 0.092 0.908 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.110 0.890 30 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.758 3.989 -11.823 12.779 hybrid contribution 0.325 -1.156 -1.176 1.681 sum 3.083 2.833 -12.999 13.657 Atomic orbital electron populations 1.22475 0.98590 1.01443 0.99480 1.18993 0.90652 0.92165 0.82450 0.94957 1.22103 1.40528 1.10818 0.90638 0.92132 1.25642 0.93701 1.05722 0.91958 1.70797 1.43731 1.06585 1.31759 0.84195 0.77086 0.76067 0.76452 1.20835 1.20282 1.20943 1.48488 1.50087 1.11752 1.22667 1.22098 0.94318 0.95341 0.90302 1.22142 0.95127 0.95047 0.99884 0.89421 1.21788 0.95259 1.01000 1.02036 1.22475 0.98967 1.00191 0.98005 1.20508 0.81046 0.82320 0.86309 1.90673 1.39874 1.54604 1.55380 0.96067 0.92050 0.92185 0.91908 0.92160 0.90762 0.92544 0.92309 0.91846 0.88976 0.88904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.86 9.01 37.15 0.33 -3.52 16 2 C 0.26 6.36 2.45 -69.08 -0.17 6.20 16 3 H 0.03 0.76 6.64 -51.93 -0.35 0.42 16 4 C -0.60 -17.62 8.33 -34.44 -0.29 -17.91 16 5 H 0.06 1.99 7.80 -52.49 -0.41 1.58 16 6 C 0.04 1.06 5.20 -17.82 -0.09 0.97 16 7 N -0.90 -28.25 13.69 55.43 0.76 -27.49 16 8 Si 1.03 24.92 26.44 -169.99 -4.49 20.42 16 9 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 10 H -0.28 -6.18 6.13 56.52 0.35 -5.83 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 12 N -0.60 -12.76 2.82 -166.05 -0.47 -13.23 16 13 C 0.10 1.61 6.87 -3.03 -0.02 1.59 16 14 C -0.10 -1.33 3.75 -88.89 -0.33 -1.66 16 15 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 16 C -0.14 -1.82 9.14 37.16 0.34 -1.49 16 17 C -0.16 -2.39 6.41 -26.74 -0.17 -2.56 16 18 C 0.51 11.23 7.25 -10.86 -0.08 11.15 16 19 O -0.53 -14.17 15.86 5.56 0.09 -14.08 16 20 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 21 H 0.06 1.58 6.58 -51.93 -0.34 1.24 16 22 H 0.06 1.46 5.45 -51.93 -0.28 1.17 16 23 H 0.27 8.69 8.73 -40.82 -0.36 8.34 16 24 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.07 1.13 7.92 -51.93 -0.41 0.72 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 29 H 0.09 1.34 7.91 -51.93 -0.41 0.93 16 30 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 245.59 15.07 3.70 3.70 Total: -1.00 -33.90 245.59 -5.26 -39.16 By element: Atomic # 1 Polarization: 3.11 SS G_CDS: -4.37 Total: -1.26 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: -0.48 Total: -7.23 kcal Atomic # 7 Polarization: -41.01 SS G_CDS: 0.29 Total: -40.72 kcal Atomic # 8 Polarization: -14.17 SS G_CDS: 0.09 Total: -14.08 kcal Atomic # 14 Polarization: 24.92 SS G_CDS: -4.49 Total: 20.42 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -33.90 -5.26 -39.16 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261028921.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.081 kcal (2) G-P(sol) polarization free energy of solvation -33.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds