Wall clock time and date at job start Mon Mar 30 2020 02:25:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09006 * 109.46930 * 2 1 4 4 C 1.50700 * 109.47749 * 120.00398 * 2 1 3 5 5 H 1.08002 * 119.99982 * 114.35849 * 4 2 1 6 6 C 1.37880 * 119.99985 * 294.36837 * 4 2 1 7 7 N 1.31506 * 120.00289 * 157.07354 * 6 4 2 8 8 Si 1.86800 * 119.99805 * 337.06570 * 6 4 2 9 9 H 1.48492 * 109.47233 * 180.02562 * 8 6 4 10 10 H 1.48503 * 109.47106 * 60.00147 * 8 6 4 11 11 H 1.48502 * 109.47208 * 300.00913 * 8 6 4 12 12 N 1.46507 * 109.47142 * 240.00928 * 2 1 3 13 13 C 1.46760 * 124.34953 * 119.72281 * 12 2 1 14 14 C 1.54663 * 105.37996 * 162.85580 * 13 12 2 15 15 H 1.08996 * 110.82436 * 143.77626 * 14 13 12 16 16 C 1.53003 * 111.19011 * 267.59098 * 14 13 12 17 17 C 1.54630 * 101.68544 * 25.76333 * 14 13 12 18 18 C 1.34419 * 124.34536 * 300.01808 * 12 2 1 19 19 O 1.21282 * 124.94400 * 0.43691 * 18 12 2 20 20 H 1.08998 * 109.47792 * 53.36736 * 1 2 3 21 21 H 1.09004 * 109.47343 * 173.37478 * 1 2 3 22 22 H 1.09007 * 109.46930 * 293.36963 * 1 2 3 23 23 H 0.97007 * 119.99816 * 354.91948 * 7 6 4 24 24 H 1.08999 * 110.24721 * 281.97815 * 13 12 2 25 25 H 1.08996 * 110.25163 * 43.98535 * 13 12 2 26 26 H 1.09003 * 109.46743 * 173.85852 * 16 14 13 27 27 H 1.08996 * 109.47187 * 293.86036 * 16 14 13 28 28 H 1.09000 * 109.46959 * 53.86511 * 16 14 13 29 29 H 1.09005 * 110.48969 * 216.30918 * 17 14 13 30 30 H 1.08996 * 110.48667 * 93.66548 * 17 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.5762 -1.6386 1.1338 6 6 1.7978 -0.1757 2.4794 7 7 1.8118 -0.9524 3.5405 8 14 1.4603 1.6522 2.6643 9 1 1.2424 1.9728 4.0978 10 1 0.2480 2.0130 1.8861 11 1 2.6225 2.4242 2.1559 12 7 2.0183 -0.6904 -1.1963 13 6 2.8607 -0.0692 -2.2251 14 6 3.4724 -1.2464 -3.0202 15 1 3.5565 -0.9973 -4.0779 16 6 4.8306 -1.6548 -2.4463 17 6 2.4200 -2.3567 -2.7951 18 6 1.7476 -1.9727 -1.4955 19 8 1.0634 -2.7136 -0.8220 20 1 -0.3634 0.6132 -0.8246 21 1 -0.3634 -1.0208 -0.1186 22 1 -0.3633 0.4077 0.9434 23 1 1.9137 -1.9116 3.4381 24 1 2.2557 0.5578 -2.8800 25 1 3.6503 0.5211 -1.7602 26 1 5.1851 -2.5515 -2.9548 27 1 5.5460 -0.8460 -2.5950 28 1 4.7284 -1.8582 -1.3803 29 1 2.9048 -3.3285 -2.7011 30 1 1.6966 -2.3676 -3.6103 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261028921.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:36 Heat of formation + Delta-G solvation = -67.295373 kcal Electronic energy + Delta-G solvation = -13102.856482 eV Core-core repulsion = 10896.755845 eV Total energy + Delta-G solvation = -2206.100637 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.30454 -37.48353 -36.35980 -34.04995 -31.38597 -29.06575 -27.05877 -26.73509 -23.36024 -21.57967 -20.20581 -19.29823 -17.56674 -16.88901 -16.16359 -15.70008 -15.13461 -14.65894 -14.64834 -14.39809 -14.24860 -13.79223 -13.44344 -13.20398 -12.87033 -12.43830 -12.23912 -12.01193 -11.94882 -11.77681 -11.64295 -11.24098 -10.59337 -10.32710 -9.50035 -8.73641 -6.38103 1.45206 1.53674 1.71423 1.82448 2.45683 2.49908 2.96767 3.55300 3.56403 3.96761 4.16704 4.41750 4.59962 4.62580 4.65801 4.75329 4.77469 4.81544 4.92094 4.94248 5.05713 5.17475 5.43029 5.44201 5.74424 5.94044 5.99298 6.53965 6.63008 7.32732 7.53269 8.54048 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.043352 B = 0.012325 C = 0.011909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.721931 B = 2271.245265 C = 2350.553241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.254 3.746 3 H 0.060 0.940 4 C -0.606 4.606 5 H 0.000 1.000 6 C -0.021 4.021 7 N -0.930 5.930 8 Si 1.084 2.916 9 H -0.288 1.288 10 H -0.242 1.242 11 H -0.251 1.251 12 N -0.607 5.607 13 C 0.092 3.908 14 C -0.087 4.087 15 H 0.142 0.858 16 C -0.144 4.144 17 C -0.143 4.143 18 C 0.488 3.512 19 O -0.598 6.598 20 H 0.062 0.938 21 H 0.028 0.972 22 H 0.052 0.948 23 H 0.246 0.754 24 H 0.097 0.903 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.014 0.986 29 H 0.096 0.904 30 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.870 5.958 -16.630 18.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.151 3.849 3 H 0.077 0.923 4 C -0.644 4.644 5 H 0.018 0.982 6 C -0.219 4.219 7 N -0.564 5.564 8 Si 0.902 3.098 9 H -0.214 1.214 10 H -0.166 1.166 11 H -0.175 1.175 12 N -0.339 5.339 13 C -0.030 4.030 14 C -0.105 4.105 15 H 0.159 0.841 16 C -0.201 4.201 17 C -0.183 4.183 18 C 0.277 3.723 19 O -0.480 6.480 20 H 0.080 0.920 21 H 0.047 0.953 22 H 0.071 0.929 23 H 0.055 0.945 24 H 0.115 0.885 25 H 0.096 0.904 26 H 0.095 0.905 27 H 0.099 0.901 28 H 0.034 0.966 29 H 0.114 0.886 30 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 3.258 6.813 -15.111 16.893 hybrid contribution 0.239 -2.132 -0.197 2.154 sum 3.497 4.681 -15.308 16.385 Atomic orbital electron populations 1.22335 0.97955 1.00217 1.00724 1.18819 0.91138 0.92869 0.82063 0.92282 1.22235 1.39844 1.08705 0.93641 0.98175 1.27454 0.92585 1.10384 0.91448 1.70964 1.47093 1.05328 1.33048 0.83616 0.79534 0.69701 0.76902 1.21393 1.16628 1.17508 1.48615 1.50409 1.12127 1.22727 1.22563 0.94314 0.96606 0.89530 1.22258 0.93536 0.92432 1.02320 0.84062 1.21819 0.96277 1.02904 0.99119 1.22492 0.99865 1.01271 0.94706 1.21796 0.80328 0.82079 0.88104 1.90623 1.42955 1.56312 1.58119 0.91958 0.95297 0.92909 0.94504 0.88541 0.90396 0.90540 0.90117 0.96644 0.88580 0.85658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.18 9.01 71.98 0.65 -6.54 16 2 C 0.25 12.30 2.45 44.24 0.11 12.41 16 3 H 0.06 2.58 6.64 -2.38 -0.02 2.56 16 4 C -0.61 -36.87 8.33 25.60 0.21 -36.66 16 5 H 0.00 -0.01 7.80 -2.91 -0.02 -0.04 16 6 C -0.02 -1.25 5.20 84.66 0.44 -0.81 16 7 N -0.93 -61.59 13.69 21.45 0.29 -61.30 16 8 Si 1.08 49.18 26.44 68.60 1.81 50.99 16 9 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 10 H -0.24 -9.64 6.13 99.48 0.61 -9.03 16 11 H -0.25 -10.06 7.11 99.48 0.71 -9.35 16 12 N -0.61 -25.30 2.82 -797.85 -2.25 -27.55 16 13 C 0.09 2.49 6.87 86.90 0.60 3.09 16 14 C -0.09 -1.85 3.75 -9.67 -0.04 -1.89 16 15 H 0.14 1.69 8.14 -2.39 -0.02 1.67 16 16 C -0.14 -3.26 9.14 71.98 0.66 -2.61 16 17 C -0.14 -4.02 6.41 30.59 0.20 -3.82 16 18 C 0.49 21.58 7.25 87.90 0.64 22.22 16 19 O -0.60 -33.89 15.86 -3.03 -0.05 -33.94 16 20 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 21 H 0.03 1.50 6.58 -2.38 -0.02 1.48 16 22 H 0.05 2.49 5.45 -2.38 -0.01 2.47 16 23 H 0.25 17.08 8.73 -92.70 -0.81 16.27 16 24 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 25 H 0.08 2.07 7.92 -2.39 -0.02 2.06 16 26 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.10 2.64 7.91 -2.38 -0.02 2.62 16 30 H 0.13 2.74 8.14 -2.39 -0.02 2.72 16 Total: -1.00 -82.16 245.59 4.24 -77.92 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: 0.97 Total: 8.47 kcal Atomic # 6 Polarization: -18.06 SS G_CDS: 3.46 Total: -14.60 kcal Atomic # 7 Polarization: -86.89 SS G_CDS: -1.96 Total: -88.85 kcal Atomic # 8 Polarization: -33.89 SS G_CDS: -0.05 Total: -33.94 kcal Atomic # 14 Polarization: 49.18 SS G_CDS: 1.81 Total: 50.99 kcal Total: -82.16 4.24 -77.92 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261028921.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.625 kcal (2) G-P(sol) polarization free energy of solvation -82.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds