Wall clock time and date at job start Mon Mar 30 2020 02:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21280 * 119.99740 * 2 1 4 4 N 1.34777 * 120.00132 * 180.02562 * 2 1 3 5 5 C 1.46504 * 119.99751 * 179.97438 * 4 2 1 6 6 H 1.08997 * 110.53931 * 327.61127 * 5 4 2 7 7 C 1.54961 * 110.53039 * 90.24223 * 5 4 2 8 8 C 1.54895 * 102.77671 * 156.56394 * 7 5 4 9 9 C 1.54268 * 104.19476 * 322.08719 * 8 7 5 10 10 H 1.08999 * 110.03048 * 264.32059 * 9 8 7 11 11 C 1.50703 * 110.06954 * 142.91786 * 9 8 7 12 12 H 1.07999 * 119.99243 * 242.80329 * 11 9 8 13 13 C 1.37867 * 120.00359 * 62.80802 * 11 9 8 14 14 N 1.31518 * 119.99980 * 359.97438 * 13 11 9 15 15 Si 1.86803 * 120.00410 * 179.97438 * 13 11 9 16 16 H 1.48505 * 109.46957 * 89.99476 * 15 13 11 17 17 H 1.48492 * 109.47293 * 209.99709 * 15 13 11 18 18 H 1.48506 * 109.46732 * 330.00072 * 15 13 11 19 19 C 1.53869 * 106.60115 * 23.60777 * 9 8 7 20 20 H 1.09010 * 109.46810 * 239.99222 * 1 2 3 21 21 H 1.09000 * 109.47239 * 359.97438 * 1 2 3 22 22 H 1.08994 * 109.47210 * 119.99978 * 1 2 3 23 23 H 0.96998 * 120.00042 * 359.97438 * 4 2 1 24 24 H 1.09001 * 110.71970 * 38.25670 * 7 5 4 25 25 H 1.08998 * 110.76825 * 274.90038 * 7 5 4 26 26 H 1.08997 * 110.48689 * 203.40743 * 8 7 5 27 27 H 1.09001 * 110.48394 * 80.76190 * 8 7 5 28 28 H 0.97005 * 119.99938 * 180.02562 * 14 13 11 29 29 H 1.09002 * 110.03268 * 119.28653 * 19 9 8 30 30 H 1.08995 * 110.03391 * 240.66959 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6459 -1.1671 -0.0011 6 1 4.0281 -0.3050 -0.5478 7 6 4.1899 -1.1735 1.4499 8 6 5.6080 -1.7735 1.2814 9 6 5.4324 -2.8624 0.2028 10 1 5.2845 -3.8341 0.6739 11 6 6.6432 -2.9026 -0.6935 12 1 6.5443 -2.6765 -1.7449 13 6 7.8770 -3.2280 -0.1713 14 7 7.9974 -3.5028 1.1092 15 14 9.3778 -3.2785 -1.2825 16 1 10.0189 -1.9392 -1.3095 17 1 10.3442 -4.2795 -0.7639 18 1 8.9631 -3.6566 -2.6574 19 6 4.1856 -2.4767 -0.6124 20 1 -0.3633 -0.5140 0.8900 21 1 -0.3634 1.0277 0.0005 22 1 -0.3633 -0.5138 -0.8899 23 1 1.6959 -2.0072 -0.0005 24 1 3.5758 -1.8077 2.0892 25 1 4.2440 -0.1598 1.8469 26 1 5.9490 -2.2153 2.2176 27 1 6.3075 -1.0096 0.9419 28 1 8.8655 -3.7314 1.4766 29 1 4.4565 -2.3177 -1.6562 30 1 3.4331 -3.2615 -0.5375 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261035936.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:54 Heat of formation + Delta-G solvation = -83.262536 kcal Electronic energy + Delta-G solvation = -12554.219140 eV Core-core repulsion = 10347.426115 eV Total energy + Delta-G solvation = -2206.793025 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.75277 -38.66685 -35.30983 -33.86131 -30.87842 -29.91523 -28.14474 -25.71250 -21.86319 -21.35112 -20.86254 -18.56196 -17.76191 -17.21129 -16.53057 -16.09881 -15.44067 -15.03534 -14.31048 -14.18068 -13.90391 -13.29037 -13.04064 -13.01574 -12.69195 -12.55171 -12.36495 -12.01405 -11.62047 -11.53630 -11.25979 -10.83449 -10.75296 -10.46628 -9.94121 -8.12016 -6.21095 1.40831 1.42164 1.51615 1.72448 2.39291 2.44119 3.18980 3.86568 3.99070 4.07634 4.26812 4.58087 4.69390 4.73246 4.83301 4.84962 4.98361 5.00386 5.14401 5.16227 5.37155 5.42573 5.65850 5.70498 5.88949 5.97156 6.38703 6.70143 6.90496 7.37935 7.46271 8.96864 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.073850 B = 0.007817 C = 0.007630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 379.055261 B = 3581.078312 C = 3669.004689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.497 3.503 3 O -0.609 6.609 4 N -0.709 5.709 5 C 0.148 3.852 6 H 0.062 0.938 7 C -0.124 4.124 8 C -0.084 4.084 9 C 0.038 3.962 10 H 0.007 0.993 11 C -0.532 4.532 12 H 0.054 0.946 13 C 0.010 3.990 14 N -0.919 5.919 15 Si 0.951 3.049 16 H -0.279 1.279 17 H -0.283 1.283 18 H -0.266 1.266 19 C -0.106 4.106 20 H 0.112 0.888 21 H 0.088 0.912 22 H 0.113 0.887 23 H 0.416 0.584 24 H 0.075 0.925 25 H 0.048 0.952 26 H 0.037 0.963 27 H 0.026 0.974 28 H 0.260 0.740 29 H 0.055 0.945 30 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.718 1.587 -1.589 13.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.287 3.713 3 O -0.491 6.491 4 N -0.361 5.361 5 C 0.042 3.958 6 H 0.080 0.920 7 C -0.163 4.163 8 C -0.123 4.123 9 C 0.019 3.981 10 H 0.025 0.975 11 C -0.570 4.570 12 H 0.072 0.928 13 C -0.188 4.188 14 N -0.559 5.559 15 Si 0.777 3.223 16 H -0.205 1.205 17 H -0.209 1.209 18 H -0.191 1.191 19 C -0.144 4.144 20 H 0.131 0.869 21 H 0.107 0.893 22 H 0.131 0.869 23 H 0.254 0.746 24 H 0.094 0.906 25 H 0.067 0.933 26 H 0.056 0.944 27 H 0.045 0.955 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -13.181 2.251 -1.477 13.453 hybrid contribution 1.207 -0.397 -0.276 1.300 sum -11.974 1.854 -1.753 12.243 Atomic orbital electron populations 1.21913 0.87439 1.06049 1.06571 1.21823 0.92616 0.82788 0.74118 1.90690 1.72504 1.33438 1.52422 1.46124 1.06415 1.09438 1.74126 1.21604 0.79769 0.98406 0.96005 0.91970 1.22839 0.97181 0.99687 0.96561 1.22035 0.93769 0.97573 0.98909 1.19218 0.92225 0.93742 0.92897 0.97491 1.21690 0.93808 1.46423 0.95121 0.92805 1.25757 1.01760 0.95012 0.96292 1.70088 1.24675 1.47910 1.13211 0.85667 0.79500 0.77713 0.79468 1.20537 1.20873 1.19063 1.22363 0.97604 0.95142 0.99289 0.86916 0.89309 0.86860 0.74637 0.90622 0.93307 0.94427 0.95488 0.93134 0.92642 0.90531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.42 10.32 71.24 0.74 -1.69 16 2 C 0.50 13.91 7.94 87.66 0.70 14.61 16 3 O -0.61 -23.96 16.74 -3.03 -0.05 -24.01 16 4 N -0.71 -19.15 5.16 -437.33 -2.26 -21.41 16 5 C 0.15 5.38 3.22 46.09 0.15 5.53 16 6 H 0.06 2.61 7.56 -2.39 -0.02 2.60 16 7 C -0.12 -4.82 6.58 31.91 0.21 -4.61 16 8 C -0.08 -4.05 5.44 31.67 0.17 -3.88 16 9 C 0.04 1.88 2.81 -10.82 -0.03 1.85 16 10 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 11 C -0.53 -29.36 8.37 25.60 0.21 -29.14 16 12 H 0.05 2.91 7.33 -2.91 -0.02 2.89 16 13 C 0.01 0.59 5.33 84.65 0.45 1.04 16 14 N -0.92 -53.88 12.43 21.44 0.27 -53.61 16 15 Si 0.95 44.10 29.54 68.60 2.03 46.13 16 16 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 17 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 18 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 19 C -0.11 -4.09 6.18 31.32 0.19 -3.90 16 20 H 0.11 1.14 8.14 -2.38 -0.02 1.12 16 21 H 0.09 1.39 8.12 -2.39 -0.02 1.37 16 22 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 23 H 0.42 8.02 8.37 -92.71 -0.78 7.24 16 24 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 25 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 26 H 0.04 1.92 7.97 -2.39 -0.02 1.90 16 27 H 0.03 1.40 7.85 -2.39 -0.02 1.38 16 28 H 0.26 14.52 8.31 -92.70 -0.77 13.75 16 29 H 0.05 2.21 7.37 -2.39 -0.02 2.19 16 30 H 0.08 2.46 7.73 -2.39 -0.02 2.44 16 Total: -1.00 -68.81 252.67 3.12 -65.69 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: 0.34 Total: 7.41 kcal Atomic # 6 Polarization: -22.99 SS G_CDS: 2.79 Total: -20.20 kcal Atomic # 7 Polarization: -73.03 SS G_CDS: -1.99 Total: -75.02 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: -0.05 Total: -24.01 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -68.81 3.12 -65.69 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261035936.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.572 kcal (2) G-P(sol) polarization free energy of solvation -68.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds