Wall clock time and date at job start Mon Mar 30 2020 02:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21289 * 120.00436 * 2 1 4 4 N 1.34778 * 120.00084 * 180.02562 * 2 1 3 5 5 C 1.46502 * 120.00243 * 179.97438 * 4 2 1 6 6 H 1.09001 * 110.01576 * 34.93218 * 5 4 2 7 7 C 1.54268 * 110.03125 * 273.54639 * 5 4 2 8 8 C 1.54887 * 104.19348 * 217.05546 * 7 5 4 9 9 C 1.54884 * 102.75103 * 37.94330 * 8 7 5 10 10 H 1.09005 * 110.49073 * 80.86340 * 9 8 7 11 11 C 1.50695 * 110.48909 * 203.38135 * 9 8 7 12 12 H 1.08004 * 120.00546 * 117.03188 * 11 9 8 13 13 C 1.37885 * 119.99721 * 296.75440 * 11 9 8 14 14 N 1.31514 * 120.00035 * 0.02562 * 13 11 9 15 15 Si 1.86803 * 119.99853 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.46986 * 90.00256 * 15 13 11 17 17 H 1.48496 * 109.47029 * 210.00273 * 15 13 11 18 18 H 1.48499 * 109.47352 * 330.00102 * 15 13 11 19 19 C 1.54079 * 109.97098 * 156.38487 * 5 4 2 20 20 H 1.08998 * 109.46790 * 239.99873 * 1 2 3 21 21 H 1.09005 * 109.47047 * 359.97438 * 1 2 3 22 22 H 1.08997 * 109.47453 * 119.99247 * 1 2 3 23 23 H 0.97003 * 119.99658 * 359.97438 * 4 2 1 24 24 H 1.08997 * 110.48885 * 98.37890 * 7 5 4 25 25 H 1.09003 * 110.48562 * 335.73267 * 7 5 4 26 26 H 1.08995 * 110.75515 * 279.62432 * 8 7 5 27 27 H 1.09002 * 110.91131 * 156.32889 * 8 7 5 28 28 H 0.97000 * 119.99706 * 179.97438 * 14 13 11 29 29 H 1.09004 * 110.16429 * 0.14959 * 19 5 4 30 30 H 1.08996 * 110.00955 * 238.64626 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6459 -1.1672 -0.0011 6 1 4.0192 -0.3277 0.5854 7 6 4.1738 -1.0773 -1.4479 8 6 5.4297 -1.9837 -1.4509 9 6 5.0047 -3.1597 -0.5370 10 1 4.3967 -3.8740 -1.0921 11 6 6.2169 -3.8406 0.0445 12 1 6.3756 -3.8411 1.1128 13 6 7.1204 -4.4679 -0.7870 14 7 6.9246 -4.4716 -2.0875 15 14 8.6234 -5.3112 -0.0664 16 1 8.2978 -6.7278 0.2380 17 1 9.7378 -5.2590 -1.0464 18 1 9.0294 -4.6173 1.1822 19 6 4.1723 -2.4943 0.5785 20 1 -0.3633 -0.5139 0.8900 21 1 -0.3633 1.0277 0.0005 22 1 -0.3634 -0.5137 -0.8900 23 1 1.6958 -2.0073 -0.0005 24 1 4.4442 -0.0500 -1.6921 25 1 3.4296 -1.4541 -2.1496 26 1 6.2867 -1.4578 -1.0304 27 1 5.6515 -2.3377 -2.4577 28 1 7.5604 -4.9126 -2.6724 29 1 3.3391 -3.1392 0.8577 30 1 4.8009 -2.2985 1.4472 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261035938.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:56 Heat of formation + Delta-G solvation = -82.145707 kcal Electronic energy + Delta-G solvation = -12550.695498 eV Core-core repulsion = 10343.950903 eV Total energy + Delta-G solvation = -2206.744595 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.77863 -38.62886 -35.27401 -33.83882 -30.87720 -29.92557 -28.16006 -25.70666 -21.83837 -21.20769 -20.99303 -18.56854 -17.73168 -17.13890 -16.56370 -16.11590 -15.34696 -15.12694 -14.39510 -14.17574 -13.74609 -13.28909 -13.08970 -12.94660 -12.69239 -12.58175 -12.41658 -12.06140 -11.62368 -11.47908 -11.12785 -10.83079 -10.80304 -10.44481 -9.96498 -8.10704 -6.20233 1.42151 1.43747 1.53281 1.72279 2.40703 2.45081 3.20256 3.85819 4.00943 4.07998 4.25184 4.57705 4.68227 4.72380 4.82161 4.85917 5.00506 5.03688 5.13031 5.17765 5.37787 5.40208 5.65984 5.71465 5.89348 5.99849 6.38809 6.69377 6.90739 7.36384 7.47392 8.97821 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.085246 B = 0.007608 C = 0.007424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 328.380685 B = 3679.577736 C = 3770.585724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.498 3.502 3 O -0.607 6.607 4 N -0.712 5.712 5 C 0.148 3.852 6 H 0.066 0.934 7 C -0.124 4.124 8 C -0.093 4.093 9 C 0.042 3.958 10 H 0.008 0.992 11 C -0.533 4.533 12 H 0.055 0.945 13 C 0.012 3.988 14 N -0.920 5.920 15 Si 0.952 3.048 16 H -0.274 1.274 17 H -0.287 1.287 18 H -0.269 1.269 19 C -0.109 4.109 20 H 0.113 0.887 21 H 0.089 0.911 22 H 0.110 0.890 23 H 0.414 0.586 24 H 0.050 0.950 25 H 0.064 0.936 26 H 0.032 0.968 27 H 0.043 0.957 28 H 0.260 0.740 29 H 0.074 0.926 30 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.352 3.480 3.588 12.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.287 3.713 3 O -0.489 6.489 4 N -0.364 5.364 5 C 0.042 3.958 6 H 0.085 0.915 7 C -0.163 4.163 8 C -0.132 4.132 9 C 0.023 3.977 10 H 0.026 0.974 11 C -0.571 4.571 12 H 0.073 0.927 13 C -0.187 4.187 14 N -0.559 5.559 15 Si 0.778 3.222 16 H -0.200 1.200 17 H -0.212 1.212 18 H -0.193 1.193 19 C -0.147 4.147 20 H 0.131 0.869 21 H 0.108 0.892 22 H 0.128 0.872 23 H 0.252 0.748 24 H 0.069 0.931 25 H 0.083 0.917 26 H 0.051 0.949 27 H 0.061 0.939 28 H 0.069 0.931 29 H 0.093 0.907 30 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -10.862 4.145 3.443 12.125 hybrid contribution 1.016 -0.864 -0.023 1.333 sum -9.847 3.281 3.420 10.928 Atomic orbital electron populations 1.21916 0.87652 1.06060 1.06470 1.21780 0.92557 0.82794 0.74149 1.90679 1.72441 1.33293 1.52463 1.46280 1.06621 1.09385 1.74084 1.21500 0.79947 0.98300 0.96007 0.91548 1.22707 0.98161 0.98820 0.96581 1.22224 0.94877 0.96096 0.99988 1.19419 0.93555 0.92533 0.92198 0.97362 1.21598 1.07993 1.34258 0.93215 0.92679 1.25756 1.00839 0.96902 0.95215 1.70081 1.37498 1.44677 1.03638 0.85650 0.79308 0.79025 0.78244 1.19992 1.21240 1.19327 1.22425 0.99215 0.94204 0.98828 0.86879 0.89178 0.87185 0.74844 0.93117 0.91695 0.94885 0.93862 0.93149 0.90715 0.92235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.54 10.32 71.24 0.74 -1.81 16 2 C 0.50 14.01 7.93 87.66 0.70 14.70 16 3 O -0.61 -23.44 16.76 -3.06 -0.05 -23.49 16 4 N -0.71 -19.77 5.05 -438.76 -2.22 -21.98 16 5 C 0.15 5.31 3.23 45.79 0.15 5.45 16 6 H 0.07 2.59 7.61 -2.39 -0.02 2.57 16 7 C -0.12 -4.90 6.52 31.67 0.21 -4.69 16 8 C -0.09 -4.45 5.68 31.88 0.18 -4.27 16 9 C 0.04 2.02 2.75 -10.47 -0.03 1.99 16 10 H 0.01 0.43 8.14 -2.38 -0.02 0.41 16 11 C -0.53 -28.89 8.48 25.60 0.22 -28.68 16 12 H 0.05 2.92 7.56 -2.91 -0.02 2.90 16 13 C 0.01 0.64 5.34 84.66 0.45 1.09 16 14 N -0.92 -53.27 12.13 21.45 0.26 -53.01 16 15 Si 0.95 43.42 29.54 68.60 2.03 45.45 16 16 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 17 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 18 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 19 C -0.11 -4.19 6.14 31.39 0.19 -3.99 16 20 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 21 H 0.09 1.43 8.12 -2.38 -0.02 1.41 16 22 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 23 H 0.41 8.82 8.30 -92.71 -0.77 8.05 16 24 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 25 H 0.06 2.43 8.05 -2.39 -0.02 2.41 16 26 H 0.03 1.64 8.05 -2.39 -0.02 1.62 16 27 H 0.04 2.26 7.45 -2.39 -0.02 2.24 16 28 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 29 H 0.07 2.48 7.61 -2.38 -0.02 2.46 16 30 H 0.06 2.35 7.67 -2.39 -0.02 2.34 16 Total: -1.00 -66.90 252.48 3.17 -63.73 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: 0.35 Total: 9.50 kcal Atomic # 6 Polarization: -22.99 SS G_CDS: 2.80 Total: -20.19 kcal Atomic # 7 Polarization: -73.04 SS G_CDS: -1.96 Total: -74.99 kcal Atomic # 8 Polarization: -23.44 SS G_CDS: -0.05 Total: -23.49 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -66.90 3.17 -63.73 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261035938.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.418 kcal (2) G-P(sol) polarization free energy of solvation -66.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds