Wall clock time and date at job start Mon Mar 30 2020 02:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21285 * 120.00095 * 2 1 4 4 N 1.34780 * 120.00244 * 179.97438 * 2 1 3 5 5 C 1.46500 * 120.00093 * 180.02562 * 4 2 1 6 6 H 1.08995 * 110.01401 * 325.06809 * 5 4 2 7 7 C 1.54266 * 110.03070 * 86.45671 * 5 4 2 8 8 C 1.54894 * 104.31305 * 95.65382 * 7 5 4 9 9 C 1.55238 * 102.58338 * 37.93170 * 8 7 5 10 10 H 1.09006 * 110.46947 * 80.77225 * 9 8 7 11 11 C 1.50703 * 110.57792 * 203.33635 * 9 8 7 12 12 H 1.08000 * 119.99590 * 114.88349 * 11 9 8 13 13 C 1.37871 * 119.99856 * 294.87156 * 11 9 8 14 14 N 1.31513 * 120.00546 * 0.02562 * 13 11 9 15 15 Si 1.86805 * 119.99762 * 180.02562 * 13 11 9 16 16 H 1.48491 * 109.47622 * 90.00134 * 15 13 11 17 17 H 1.48510 * 109.46951 * 210.00356 * 15 13 11 18 18 H 1.48505 * 109.47046 * 330.00003 * 15 13 11 19 19 C 1.53869 * 110.06928 * 203.64661 * 5 4 2 20 20 H 1.09002 * 109.47440 * 240.00048 * 1 2 3 21 21 H 1.09001 * 109.46897 * 0.02562 * 1 2 3 22 22 H 1.08998 * 109.46894 * 119.99904 * 1 2 3 23 23 H 0.96999 * 119.99541 * 0.02562 * 4 2 1 24 24 H 1.09002 * 110.48629 * 214.40135 * 7 5 4 25 25 H 1.08998 * 110.48744 * 336.91039 * 7 5 4 26 26 H 1.08996 * 110.75388 * 156.31523 * 8 7 5 27 27 H 1.08993 * 110.76071 * 279.69749 * 8 7 5 28 28 H 0.97003 * 120.00123 * 179.97438 * 14 13 11 29 29 H 1.08999 * 110.04012 * 359.97438 * 19 5 4 30 30 H 1.09006 * 110.02998 * 121.36690 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1672 0.0011 6 1 4.0192 -0.3277 -0.5854 7 6 4.1738 -1.0772 1.4478 8 6 4.4437 -2.5488 1.8491 9 6 5.0047 -3.1597 0.5369 10 1 6.0611 -2.9158 0.4240 11 6 4.8047 -4.6533 0.5201 12 1 4.1493 -5.1021 -0.2115 13 6 5.4587 -5.4467 1.4386 14 7 6.2567 -4.9001 2.3298 15 14 5.2114 -7.2981 1.4174 16 1 6.2238 -7.9227 0.5286 17 1 5.3635 -7.8337 2.7941 18 1 3.8500 -7.6099 0.9126 19 6 4.1742 -2.4912 -0.5781 20 1 -0.3634 -0.5138 0.8900 21 1 -0.3633 1.0277 -0.0005 22 1 -0.3633 -0.5138 -0.8900 23 1 1.6959 -2.0072 0.0005 24 1 5.0959 -0.4971 1.4821 25 1 3.4217 -0.6354 2.1015 26 1 5.1820 -2.6017 2.6492 27 1 3.5187 -3.0453 2.1419 28 1 6.7165 -5.4583 2.9762 29 1 3.3407 -3.1347 -0.8595 30 1 4.8034 -2.2943 -1.4462 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261035940.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:58 Heat of formation + Delta-G solvation = -81.896268 kcal Electronic energy + Delta-G solvation = -12623.263747 eV Core-core repulsion = 10416.529969 eV Total energy + Delta-G solvation = -2206.733779 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.79918 -38.61185 -35.19571 -33.78887 -30.85083 -29.89741 -28.27171 -25.71002 -22.09842 -21.02448 -20.77386 -18.52002 -17.78588 -16.95345 -16.61604 -16.21631 -15.66250 -14.98758 -14.41015 -14.02188 -13.62034 -13.35439 -13.06518 -12.92376 -12.74408 -12.46538 -12.35437 -12.15917 -11.66907 -11.44801 -11.08223 -10.84607 -10.78800 -10.44401 -9.95010 -8.09554 -6.19498 1.43747 1.44865 1.54286 1.72861 2.41336 2.47454 3.21695 3.88474 4.01655 4.09617 4.21790 4.58560 4.69601 4.72189 4.76326 4.93638 4.99678 5.10105 5.13251 5.18710 5.28839 5.43421 5.66778 5.72192 5.90244 5.99788 6.38548 6.70721 6.92179 7.36240 7.48425 8.99533 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.060807 B = 0.008432 C = 0.007988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 460.359427 B = 3319.698557 C = 3504.632992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.499 3.501 3 O -0.606 6.606 4 N -0.710 5.710 5 C 0.148 3.852 6 H 0.070 0.930 7 C -0.126 4.126 8 C -0.088 4.088 9 C 0.038 3.962 10 H -0.002 1.002 11 C -0.527 4.527 12 H 0.061 0.939 13 C 0.010 3.990 14 N -0.922 5.922 15 Si 0.953 3.047 16 H -0.279 1.279 17 H -0.288 1.288 18 H -0.263 1.263 19 C -0.110 4.110 20 H 0.107 0.893 21 H 0.091 0.909 22 H 0.112 0.888 23 H 0.413 0.587 24 H 0.058 0.942 25 H 0.055 0.945 26 H 0.035 0.965 27 H 0.042 0.958 28 H 0.259 0.741 29 H 0.074 0.926 30 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.813 3.964 -3.931 12.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.288 3.712 3 O -0.488 6.488 4 N -0.362 5.362 5 C 0.042 3.958 6 H 0.089 0.911 7 C -0.165 4.165 8 C -0.126 4.126 9 C 0.020 3.980 10 H 0.016 0.984 11 C -0.566 4.566 12 H 0.079 0.921 13 C -0.189 4.189 14 N -0.562 5.562 15 Si 0.779 3.221 16 H -0.205 1.205 17 H -0.214 1.214 18 H -0.187 1.187 19 C -0.148 4.148 20 H 0.126 0.874 21 H 0.109 0.891 22 H 0.131 0.869 23 H 0.250 0.750 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.054 0.946 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.092 0.908 30 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.285 4.645 -3.801 11.908 hybrid contribution 0.322 -1.320 0.360 1.405 sum -9.963 3.325 -3.442 11.053 Atomic orbital electron populations 1.21917 0.87872 1.06040 1.06368 1.21723 0.92485 0.82770 0.74213 1.90670 1.72394 1.33165 1.52580 1.46267 1.06731 1.09317 1.73849 1.21434 0.80234 0.98190 0.95915 0.91147 1.22730 0.99859 0.97617 0.96302 1.22271 0.98597 0.92609 0.99146 1.19507 0.93427 0.93838 0.91257 0.98381 1.21574 1.26939 0.92700 1.15339 0.92111 1.25793 0.94921 1.02862 0.95318 1.70103 1.30291 1.36665 1.19127 0.85626 0.78865 0.80576 0.76998 1.20464 1.21416 1.18682 1.22414 0.99899 0.94064 0.98374 0.87428 0.89056 0.86947 0.75032 0.92364 0.92609 0.94626 0.93928 0.93228 0.90784 0.92053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.73 10.32 71.24 0.74 -1.99 16 2 C 0.50 14.34 7.93 87.66 0.70 15.03 16 3 O -0.61 -23.31 16.76 -3.04 -0.05 -23.36 16 4 N -0.71 -20.55 5.04 -439.11 -2.22 -22.76 16 5 C 0.15 5.26 3.22 45.71 0.15 5.41 16 6 H 0.07 2.61 7.61 -2.39 -0.02 2.60 16 7 C -0.13 -4.97 6.52 31.67 0.21 -4.76 16 8 C -0.09 -4.07 5.77 32.01 0.18 -3.89 16 9 C 0.04 1.87 2.72 -10.34 -0.03 1.84 16 10 H 0.00 -0.11 8.14 -2.38 -0.02 -0.13 16 11 C -0.53 -27.90 8.47 25.60 0.22 -27.68 16 12 H 0.06 3.07 7.54 -2.91 -0.02 3.05 16 13 C 0.01 0.52 5.35 84.65 0.45 0.97 16 14 N -0.92 -53.43 12.30 21.44 0.26 -53.17 16 15 Si 0.95 42.54 29.54 68.60 2.03 44.57 16 16 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 17 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 18 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 19 C -0.11 -4.20 6.13 31.32 0.19 -4.01 16 20 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 21 H 0.09 1.51 8.12 -2.39 -0.02 1.49 16 22 H 0.11 1.31 8.14 -2.39 -0.02 1.30 16 23 H 0.41 9.90 8.30 -92.71 -0.77 9.13 16 24 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 25 H 0.06 2.11 8.04 -2.39 -0.02 2.09 16 26 H 0.03 1.84 7.57 -2.39 -0.02 1.82 16 27 H 0.04 1.97 8.06 -2.39 -0.02 1.95 16 28 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 29 H 0.07 2.65 7.12 -2.39 -0.02 2.63 16 30 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16 Total: -1.00 -65.67 252.78 3.18 -62.49 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: 0.35 Total: 11.31 kcal Atomic # 6 Polarization: -21.89 SS G_CDS: 2.80 Total: -19.09 kcal Atomic # 7 Polarization: -73.98 SS G_CDS: -1.95 Total: -75.93 kcal Atomic # 8 Polarization: -23.31 SS G_CDS: -0.05 Total: -23.36 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Total: -65.67 3.18 -62.49 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261035940.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.402 kcal (2) G-P(sol) polarization free energy of solvation -65.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds