Wall clock time and date at job start Mon Mar 30 2020 02:18:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.29916 * 2 1 4 4 C 1.52920 * 109.13513 * 240.51575 * 2 1 3 5 5 C 1.53329 * 108.58855 * 189.00826 * 4 2 1 6 6 C 1.53070 * 108.43656 * 67.66938 * 5 4 2 7 7 C 1.50176 * 109.82126 * 310.97256 * 6 5 4 8 8 O 1.21282 * 118.24610 * 197.62628 * 7 6 5 9 9 N 1.33351 * 123.50893 * 17.59331 * 7 6 5 10 10 C 1.46502 * 117.94523 * 177.80319 * 9 7 6 11 11 C 1.50700 * 109.47523 * 95.35645 * 10 9 7 12 12 H 1.08000 * 119.99236 * 359.97438 * 11 10 9 13 13 C 1.37871 * 120.00584 * 180.02562 * 11 10 9 14 14 N 1.31517 * 119.99340 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00146 * 179.97438 * 13 11 10 16 16 H 1.48507 * 109.46954 * 90.00228 * 15 13 11 17 17 H 1.48507 * 109.46937 * 209.99726 * 15 13 11 18 18 H 1.48492 * 109.47155 * 329.99756 * 15 13 11 19 19 H 1.08994 * 109.47160 * 307.11795 * 1 2 3 20 20 H 1.09001 * 109.46874 * 67.11675 * 1 2 3 21 21 H 1.09005 * 109.47198 * 187.11513 * 1 2 3 22 22 H 1.08999 * 109.60655 * 308.79797 * 4 2 1 23 23 H 1.08996 * 109.60312 * 69.12295 * 4 2 1 24 24 H 1.09008 * 109.73950 * 307.88832 * 5 4 2 25 25 H 1.08995 * 109.59815 * 187.36887 * 5 4 2 26 26 H 1.08994 * 109.39936 * 190.88276 * 6 5 4 27 27 H 1.09005 * 109.39682 * 71.05354 * 6 5 4 28 28 H 1.09007 * 109.46874 * 215.35915 * 10 9 7 29 29 H 1.09002 * 109.46941 * 335.35410 * 10 9 7 30 30 H 0.97007 * 119.99539 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8902 1.0288 0.0000 4 6 2.0312 -0.7111 -1.2576 5 6 3.5475 -0.9048 -1.1380 6 6 3.8202 -1.9076 -0.0141 7 6 3.0472 -1.5193 1.2135 8 8 3.3829 -1.9947 2.2775 9 7 2.0118 -0.6791 1.1963 10 6 1.3143 -0.4231 2.4590 11 6 1.8652 0.8284 3.0925 12 1 2.6560 1.3779 2.6035 13 6 1.3603 1.2713 4.2965 14 7 0.3976 0.6018 4.8920 15 14 2.0437 2.8222 5.0820 16 1 1.2708 3.9987 4.6086 17 1 1.9328 2.7190 6.5593 18 1 3.4704 2.9819 4.7026 19 1 -0.3633 0.6201 0.8194 20 1 -0.3633 0.3996 -0.9468 21 1 -0.3634 -1.0198 0.1273 22 1 1.5433 -1.6815 -1.3481 23 1 1.8054 -0.1050 -2.1349 24 1 4.0230 0.0476 -0.9035 25 1 3.9420 -1.2908 -2.0779 26 1 4.8857 -1.9130 0.2156 27 1 3.5138 -2.9032 -0.3350 28 1 0.2492 -0.2943 2.2661 29 1 1.4620 -1.2669 3.1331 30 1 0.0426 0.9132 5.7394 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261053855.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:36 Heat of formation + Delta-G solvation = -48.471388 kcal Electronic energy + Delta-G solvation = -13026.195031 eV Core-core repulsion = 10820.910664 eV Total energy + Delta-G solvation = -2205.284367 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.68090 -36.12338 -33.98354 -32.23261 -30.55606 -27.14811 -26.68985 -23.45637 -21.66069 -21.32699 -17.93940 -16.28580 -15.94024 -15.58332 -14.69861 -14.35864 -14.07592 -13.47096 -12.91105 -12.55456 -12.47498 -11.87872 -11.64736 -11.18859 -11.06538 -10.91211 -10.77430 -10.65567 -10.54414 -10.14722 -10.02091 -9.54238 -8.67494 -8.36441 -7.57303 -5.99352 -4.03087 3.32202 3.38832 3.43016 3.57568 4.04894 4.48826 4.97590 4.99088 5.05753 5.25348 5.36424 5.66717 5.70783 5.80086 5.91614 5.95014 6.00873 6.11274 6.27407 6.30165 6.58104 6.69657 7.22057 7.56663 7.59826 7.97277 8.30940 8.62283 8.97516 9.21290 9.61211 11.08944 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.042052 B = 0.011460 C = 0.010632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.679775 B = 2442.700231 C = 2633.040895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.144 3.856 3 H 0.069 0.931 4 C -0.131 4.131 5 C -0.121 4.121 6 C -0.134 4.134 7 C 0.502 3.498 8 O -0.559 6.559 9 N -0.585 5.585 10 C 0.231 3.769 11 C -0.522 4.522 12 H 0.055 0.945 13 C 0.060 3.940 14 N -0.895 5.895 15 Si 0.897 3.103 16 H -0.281 1.281 17 H -0.285 1.285 18 H -0.275 1.275 19 H 0.075 0.925 20 H 0.057 0.943 21 H 0.055 0.945 22 H 0.067 0.933 23 H 0.075 0.925 24 H 0.068 0.932 25 H 0.067 0.933 26 H 0.090 0.910 27 H 0.088 0.912 28 H 0.038 0.962 29 H 0.047 0.953 30 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.686 -1.092 -13.024 13.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.040 3.960 3 H 0.087 0.913 4 C -0.169 4.169 5 C -0.159 4.159 6 C -0.175 4.175 7 C 0.289 3.711 8 O -0.439 6.439 9 N -0.316 5.316 10 C 0.112 3.888 11 C -0.561 4.561 12 H 0.073 0.927 13 C -0.142 4.142 14 N -0.534 5.534 15 Si 0.724 3.276 16 H -0.207 1.207 17 H -0.211 1.211 18 H -0.200 1.200 19 H 0.094 0.906 20 H 0.076 0.924 21 H 0.074 0.926 22 H 0.086 0.914 23 H 0.094 0.906 24 H 0.087 0.913 25 H 0.086 0.914 26 H 0.108 0.892 27 H 0.106 0.894 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.737 -1.336 -12.320 12.514 hybrid contribution 0.319 0.938 0.471 1.097 sum 2.056 -0.398 -11.849 12.032 Atomic orbital electron populations 1.22137 0.94891 1.02575 1.02118 1.20755 0.94591 0.96285 0.84377 0.91338 1.21969 0.95870 1.01400 0.97689 1.21621 0.96386 0.99773 0.98107 1.21647 1.01355 1.00307 0.94147 1.19847 0.81155 0.79769 0.90310 1.90684 1.66820 1.54853 1.31538 1.47609 1.30759 1.42660 1.10592 1.19431 0.92107 0.97522 0.79766 1.21404 1.19859 1.09105 1.05725 0.92653 1.24926 0.95108 0.97384 0.96742 1.69942 1.26855 1.39277 1.17375 0.86521 0.79417 0.83088 0.78532 1.20689 1.21120 1.19958 0.90586 0.92433 0.92607 0.91378 0.90602 0.91283 0.91394 0.89161 0.89370 0.94419 0.93512 0.92817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.53 8.21 37.16 0.30 -2.23 16 2 C 0.14 2.47 3.32 -68.37 -0.23 2.24 16 3 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 4 C -0.13 -1.68 5.29 -26.60 -0.14 -1.82 16 5 C -0.12 -1.53 6.03 -26.52 -0.16 -1.69 16 6 C -0.13 -2.09 6.03 -28.10 -0.17 -2.26 16 7 C 0.50 11.08 7.47 -11.87 -0.09 10.99 16 8 O -0.56 -15.13 16.13 5.56 0.09 -15.04 16 9 N -0.58 -12.91 2.69 -168.69 -0.45 -13.37 16 10 C 0.23 6.22 4.73 -5.19 -0.02 6.19 16 11 C -0.52 -15.15 9.36 -34.44 -0.32 -15.48 16 12 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 13 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 14 N -0.90 -27.06 13.29 55.43 0.74 -26.32 16 15 Si 0.90 22.22 29.54 -169.99 -5.02 17.20 16 16 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 17 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 18 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 19 H 0.08 1.40 6.81 -51.93 -0.35 1.05 16 20 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 21 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 22 H 0.07 0.85 8.10 -51.93 -0.42 0.43 16 23 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.07 0.91 8.13 -51.92 -0.42 0.48 16 25 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 27 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 28 H 0.04 1.01 5.74 -51.92 -0.30 0.71 16 29 H 0.05 1.44 7.03 -51.93 -0.37 1.07 16 30 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 247.77 15.07 3.73 3.73 Total: -1.00 -33.41 247.77 -6.20 -39.61 By element: Atomic # 1 Polarization: 0.94 SS G_CDS: -4.36 Total: -3.43 kcal Atomic # 6 Polarization: -1.47 SS G_CDS: -0.93 Total: -2.40 kcal Atomic # 7 Polarization: -39.97 SS G_CDS: 0.28 Total: -39.69 kcal Atomic # 8 Polarization: -15.13 SS G_CDS: 0.09 Total: -15.04 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -33.41 -6.20 -39.61 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261053855.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.858 kcal (2) G-P(sol) polarization free energy of solvation -33.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds