Wall clock time and date at job start Mon Mar 30 2020 02:18:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.29916 * 2 1 4 4 C 1.52920 * 109.13513 * 240.51575 * 2 1 3 5 5 C 1.53329 * 108.58855 * 189.00826 * 4 2 1 6 6 C 1.53070 * 108.43656 * 67.66938 * 5 4 2 7 7 C 1.50176 * 109.82126 * 310.97256 * 6 5 4 8 8 O 1.21282 * 118.24610 * 197.62628 * 7 6 5 9 9 N 1.33351 * 123.50893 * 17.59331 * 7 6 5 10 10 C 1.46502 * 117.94523 * 177.80319 * 9 7 6 11 11 C 1.50700 * 109.47523 * 95.35645 * 10 9 7 12 12 H 1.08000 * 119.99236 * 359.97438 * 11 10 9 13 13 C 1.37871 * 120.00584 * 180.02562 * 11 10 9 14 14 N 1.31517 * 119.99340 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00146 * 179.97438 * 13 11 10 16 16 H 1.48507 * 109.46954 * 90.00228 * 15 13 11 17 17 H 1.48507 * 109.46937 * 209.99726 * 15 13 11 18 18 H 1.48492 * 109.47155 * 329.99756 * 15 13 11 19 19 H 1.08994 * 109.47160 * 307.11795 * 1 2 3 20 20 H 1.09001 * 109.46874 * 67.11675 * 1 2 3 21 21 H 1.09005 * 109.47198 * 187.11513 * 1 2 3 22 22 H 1.08999 * 109.60655 * 308.79797 * 4 2 1 23 23 H 1.08996 * 109.60312 * 69.12295 * 4 2 1 24 24 H 1.09008 * 109.73950 * 307.88832 * 5 4 2 25 25 H 1.08995 * 109.59815 * 187.36887 * 5 4 2 26 26 H 1.08994 * 109.39936 * 190.88276 * 6 5 4 27 27 H 1.09005 * 109.39682 * 71.05354 * 6 5 4 28 28 H 1.09007 * 109.46874 * 215.35915 * 10 9 7 29 29 H 1.09002 * 109.46941 * 335.35410 * 10 9 7 30 30 H 0.97007 * 119.99539 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8902 1.0288 0.0000 4 6 2.0312 -0.7111 -1.2576 5 6 3.5475 -0.9048 -1.1380 6 6 3.8202 -1.9076 -0.0141 7 6 3.0472 -1.5193 1.2135 8 8 3.3829 -1.9947 2.2775 9 7 2.0118 -0.6791 1.1963 10 6 1.3143 -0.4231 2.4590 11 6 1.8652 0.8284 3.0925 12 1 2.6560 1.3779 2.6035 13 6 1.3603 1.2713 4.2965 14 7 0.3976 0.6018 4.8920 15 14 2.0437 2.8222 5.0820 16 1 1.2708 3.9987 4.6086 17 1 1.9328 2.7190 6.5593 18 1 3.4704 2.9819 4.7026 19 1 -0.3633 0.6201 0.8194 20 1 -0.3633 0.3996 -0.9468 21 1 -0.3634 -1.0198 0.1273 22 1 1.5433 -1.6815 -1.3481 23 1 1.8054 -0.1050 -2.1349 24 1 4.0230 0.0476 -0.9035 25 1 3.9420 -1.2908 -2.0779 26 1 4.8857 -1.9130 0.2156 27 1 3.5138 -2.9032 -0.3350 28 1 0.2492 -0.2943 2.2661 29 1 1.4620 -1.2669 3.1331 30 1 0.0426 0.9132 5.7394 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261053855.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:36 Heat of formation + Delta-G solvation = -71.536780 kcal Electronic energy + Delta-G solvation = -13027.195222 eV Core-core repulsion = 10820.910664 eV Total energy + Delta-G solvation = -2206.284558 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.30766 -37.76306 -35.71506 -34.13456 -32.10496 -29.21651 -27.93035 -25.37779 -23.14492 -22.75976 -19.49513 -18.46600 -17.51218 -17.34198 -16.36131 -16.22504 -15.39645 -14.94053 -14.36493 -14.33377 -13.90455 -13.54042 -13.12779 -13.02666 -12.88848 -12.54647 -12.33118 -12.21313 -11.87250 -11.79113 -11.61140 -11.53947 -10.62624 -10.38985 -9.44311 -8.23194 -6.37623 1.33851 1.37443 1.47748 1.86331 2.32281 2.48071 3.06036 3.76152 3.88772 3.93235 4.03821 4.41076 4.46333 4.59180 4.80561 4.87769 4.93772 5.03685 5.09531 5.15727 5.20025 5.28125 5.34307 5.45678 5.59066 5.83049 6.07182 6.70273 6.90912 7.28157 7.51590 8.84371 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.042052 B = 0.011460 C = 0.010632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.679775 B = 2442.700231 C = 2633.040895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.131 3.869 3 H 0.062 0.938 4 C -0.121 4.121 5 C -0.115 4.115 6 C -0.123 4.123 7 C 0.486 3.514 8 O -0.625 6.625 9 N -0.588 5.588 10 C 0.245 3.755 11 C -0.542 4.542 12 H 0.049 0.951 13 C 0.006 3.994 14 N -0.929 5.929 15 Si 0.969 3.031 16 H -0.261 1.261 17 H -0.280 1.280 18 H -0.274 1.274 19 H 0.038 0.962 20 H 0.101 0.899 21 H 0.050 0.950 22 H 0.077 0.923 23 H 0.116 0.884 24 H 0.062 0.938 25 H 0.113 0.887 26 H 0.098 0.902 27 H 0.113 0.887 28 H 0.034 0.966 29 H -0.006 1.006 30 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.301 -0.115 -15.647 15.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.028 3.972 3 H 0.080 0.920 4 C -0.159 4.159 5 C -0.152 4.152 6 C -0.163 4.163 7 C 0.276 3.724 8 O -0.509 6.509 9 N -0.318 5.318 10 C 0.123 3.877 11 C -0.580 4.580 12 H 0.067 0.933 13 C -0.193 4.193 14 N -0.568 5.568 15 Si 0.793 3.207 16 H -0.186 1.186 17 H -0.205 1.205 18 H -0.198 1.198 19 H 0.058 0.942 20 H 0.120 0.880 21 H 0.069 0.931 22 H 0.095 0.905 23 H 0.134 0.866 24 H 0.081 0.919 25 H 0.131 0.869 26 H 0.116 0.884 27 H 0.131 0.869 28 H 0.052 0.948 29 H 0.013 0.987 30 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.338 -0.343 -15.004 15.189 hybrid contribution 0.090 0.604 1.289 1.426 sum 2.427 0.261 -13.716 13.931 Atomic orbital electron populations 1.22080 0.94205 1.01804 1.02996 1.21191 0.95319 0.96227 0.84451 0.91991 1.21984 0.95867 1.01976 0.96043 1.21664 0.96315 0.98666 0.98566 1.21672 1.00413 1.02435 0.91779 1.21215 0.80817 0.78528 0.91888 1.90643 1.68559 1.57119 1.34623 1.47712 1.30545 1.42904 1.10619 1.18900 0.92419 0.94805 0.81537 1.21653 1.19955 1.09851 1.06559 0.93250 1.25880 0.95261 1.00949 0.97173 1.70066 1.27917 1.41027 1.17835 0.85400 0.78687 0.79120 0.77507 1.18598 1.20529 1.19841 0.94236 0.88042 0.93072 0.90474 0.86614 0.91916 0.86862 0.88395 0.86856 0.94831 0.98740 0.92425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.72 8.21 71.98 0.59 -4.13 16 2 C 0.13 4.30 3.32 45.10 0.15 4.45 16 3 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 4 C -0.12 -2.58 5.29 30.68 0.16 -2.41 16 5 C -0.11 -2.38 6.03 30.73 0.19 -2.20 16 6 C -0.12 -3.54 6.03 29.71 0.18 -3.36 16 7 C 0.49 21.77 7.47 87.71 0.66 22.43 16 8 O -0.63 -35.54 16.13 -3.04 -0.05 -35.59 16 9 N -0.59 -26.53 2.69 -806.81 -2.17 -28.70 16 10 C 0.25 13.92 4.73 85.63 0.40 14.33 16 11 C -0.54 -32.60 9.36 25.60 0.24 -32.36 16 12 H 0.05 2.95 7.81 -2.91 -0.02 2.92 16 13 C 0.01 0.36 5.46 84.65 0.46 0.82 16 14 N -0.93 -57.87 13.29 21.45 0.28 -57.59 16 15 Si 0.97 46.13 29.54 68.60 2.03 48.16 16 16 H -0.26 -11.57 7.11 99.48 0.71 -10.87 16 17 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 18 H -0.27 -12.88 7.11 99.48 0.71 -12.17 16 19 H 0.04 1.48 6.81 -2.39 -0.02 1.47 16 20 H 0.10 2.21 8.13 -2.39 -0.02 2.19 16 21 H 0.05 1.60 8.14 -2.38 -0.02 1.58 16 22 H 0.08 1.56 8.10 -2.39 -0.02 1.54 16 23 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 24 H 0.06 1.41 8.13 -2.38 -0.02 1.40 16 25 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 27 H 0.11 2.72 8.14 -2.38 -0.02 2.70 16 28 H 0.03 1.91 5.74 -2.38 -0.01 1.89 16 29 H -0.01 -0.37 7.03 -2.39 -0.02 -0.39 16 30 H 0.27 15.52 8.31 -92.70 -0.77 14.75 16 Total: -1.00 -77.82 247.77 4.22 -73.60 By element: Atomic # 1 Polarization: 1.45 SS G_CDS: 1.11 Total: 2.55 kcal Atomic # 6 Polarization: -5.46 SS G_CDS: 3.03 Total: -2.43 kcal Atomic # 7 Polarization: -84.40 SS G_CDS: -1.89 Total: -86.29 kcal Atomic # 8 Polarization: -35.54 SS G_CDS: -0.05 Total: -35.59 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.16 kcal Total: -77.82 4.22 -73.60 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261053855.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.061 kcal (2) G-P(sol) polarization free energy of solvation -77.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds