Wall clock time and date at job start Mon Mar 30 2020 02:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.12953 * 2 1 4 4 C 1.53103 * 109.20721 * 119.66981 * 2 1 3 5 5 C 1.53345 * 108.52889 * 171.30378 * 4 2 1 6 6 C 1.53074 * 108.42361 * 292.30868 * 5 4 2 7 7 C 1.50179 * 109.89064 * 48.90154 * 6 5 4 8 8 O 1.21280 * 118.24566 * 162.39664 * 7 6 5 9 9 N 1.33355 * 123.50880 * 342.41717 * 7 6 5 10 10 C 1.46499 * 117.94311 * 182.22688 * 9 7 6 11 11 C 1.50701 * 109.47260 * 90.00226 * 10 9 7 12 12 H 1.08002 * 119.99761 * 359.97438 * 11 10 9 13 13 C 1.37871 * 119.99694 * 180.27562 * 11 10 9 14 14 N 1.31514 * 120.00482 * 359.71466 * 13 11 10 15 15 Si 1.86801 * 119.99746 * 179.72062 * 13 11 10 16 16 H 1.48504 * 109.47266 * 60.00049 * 15 13 11 17 17 H 1.48504 * 109.46970 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47383 * 299.99456 * 15 13 11 19 19 H 1.09009 * 109.46803 * 179.47825 * 1 2 3 20 20 H 1.09001 * 109.47083 * 299.47509 * 1 2 3 21 21 H 1.08997 * 109.47167 * 59.47777 * 1 2 3 22 22 H 1.08999 * 109.80979 * 51.51432 * 4 2 1 23 23 H 1.08996 * 109.67443 * 291.01393 * 4 2 1 24 24 H 1.08996 * 109.67625 * 172.57702 * 5 4 2 25 25 H 1.09000 * 109.67665 * 52.03820 * 5 4 2 26 26 H 1.08995 * 109.40445 * 288.77014 * 6 5 4 27 27 H 1.09004 * 109.33148 * 168.98271 * 6 5 4 28 28 H 1.09000 * 109.47197 * 329.99232 * 10 9 7 29 29 H 1.09007 * 109.46342 * 209.99804 * 10 9 7 30 30 H 0.96995 * 120.00207 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8872 1.0298 0.0000 4 6 2.0337 -0.7157 1.2562 5 6 3.5512 -0.9004 1.1364 6 6 3.8297 -1.8963 0.0078 7 6 3.0533 -1.5094 -1.2181 8 8 3.3918 -1.9790 -2.2839 9 7 2.0117 -0.6769 -1.1976 10 6 1.3114 -0.4223 -2.4589 11 6 0.2024 -1.4283 -2.6298 12 1 0.0362 -2.1822 -1.8745 13 6 -0.5959 -1.3900 -3.7532 14 7 -0.3933 -0.4722 -4.6730 15 14 -1.9655 -2.6419 -3.9687 16 1 -2.9257 -2.5240 -2.8420 17 1 -2.6723 -2.3867 -5.2495 18 1 -1.3878 -4.0098 -3.9857 19 1 -0.3633 -1.0277 -0.0094 20 1 -0.3633 0.5057 0.8947 21 1 -0.3633 0.5219 -0.8852 22 1 1.5526 -1.6897 1.3444 23 1 1.8069 -0.1147 2.1368 24 1 3.9489 -1.2881 2.0743 25 1 4.0203 0.0561 0.9058 26 1 3.5316 -2.8956 0.3248 27 1 4.8952 -1.8922 -0.2223 28 1 2.0131 -0.5105 -3.2883 29 1 0.8908 0.5832 -2.4442 30 1 -0.9547 -0.4455 -5.4635 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261053856.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:38 Heat of formation + Delta-G solvation = -48.947117 kcal Electronic energy + Delta-G solvation = -13096.206488 eV Core-core repulsion = 10890.901492 eV Total energy + Delta-G solvation = -2205.304996 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.66660 -36.09032 -34.00934 -32.17770 -30.48304 -27.17075 -26.62418 -23.30521 -21.67783 -21.31092 -17.94707 -16.56927 -15.71040 -15.48543 -14.67456 -14.31222 -14.03490 -13.51147 -12.89871 -12.44748 -12.21198 -11.95369 -11.56828 -11.16917 -10.99871 -10.92842 -10.76744 -10.66721 -10.50321 -10.15537 -9.97795 -9.47684 -8.67005 -8.36716 -7.58674 -5.98651 -4.01797 3.33976 3.38699 3.41206 3.58872 4.05888 4.48988 4.99158 5.01089 5.07359 5.27725 5.36324 5.69696 5.71674 5.86179 5.95439 6.02734 6.08681 6.12078 6.35396 6.38731 6.64078 7.03856 7.18155 7.57277 7.59685 7.98085 8.30788 8.62570 8.97622 9.22229 9.61837 11.09778 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.044397 B = 0.011870 C = 0.010827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.519421 B = 2358.387702 C = 2585.574734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.144 3.856 3 H 0.060 0.940 4 C -0.131 4.131 5 C -0.121 4.121 6 C -0.135 4.135 7 C 0.504 3.496 8 O -0.558 6.558 9 N -0.587 5.587 10 C 0.238 3.762 11 C -0.516 4.516 12 H 0.056 0.944 13 C 0.060 3.940 14 N -0.896 5.896 15 Si 0.895 3.105 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.277 1.277 19 H 0.064 0.936 20 H 0.047 0.953 21 H 0.076 0.924 22 H 0.070 0.930 23 H 0.074 0.926 24 H 0.067 0.933 25 H 0.066 0.934 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.045 0.955 29 H 0.031 0.969 30 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.550 1.317 12.430 12.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.040 3.960 3 H 0.078 0.922 4 C -0.169 4.169 5 C -0.159 4.159 6 C -0.175 4.175 7 C 0.291 3.709 8 O -0.438 6.438 9 N -0.318 5.318 10 C 0.119 3.881 11 C -0.555 4.555 12 H 0.074 0.926 13 C -0.142 4.142 14 N -0.535 5.535 15 Si 0.723 3.277 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.203 1.203 19 H 0.083 0.917 20 H 0.066 0.934 21 H 0.095 0.905 22 H 0.089 0.911 23 H 0.093 0.907 24 H 0.086 0.914 25 H 0.085 0.915 26 H 0.108 0.892 27 H 0.107 0.893 28 H 0.063 0.937 29 H 0.049 0.951 30 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.650 1.153 11.707 12.317 hybrid contribution -0.863 -0.690 -0.135 1.114 sum 2.787 0.463 11.572 11.912 Atomic orbital electron populations 1.22128 0.93891 1.03371 1.01639 1.20828 0.95487 0.95106 0.84590 0.92210 1.21987 0.95660 1.01672 0.97580 1.21635 0.96481 0.99565 0.98169 1.21657 1.01111 1.00603 0.94170 1.19823 0.81078 0.79697 0.90337 1.90684 1.68107 1.53554 1.31415 1.47660 1.29650 1.43777 1.10763 1.19293 0.91967 0.96346 0.80490 1.21353 1.14210 1.14659 1.05260 0.92622 1.24918 0.97814 0.95851 0.95588 1.69923 1.39704 1.34034 1.09852 0.86613 0.81854 0.81988 0.77271 1.20300 1.21254 1.20286 0.91706 0.93422 0.90482 0.91106 0.90709 0.91394 0.91518 0.89231 0.89275 0.93696 0.95146 0.92782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 8.00 37.16 0.30 -2.35 16 2 C 0.14 2.45 3.29 -68.28 -0.22 2.23 16 3 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 4 C -0.13 -1.73 5.31 -26.50 -0.14 -1.87 16 5 C -0.12 -1.49 6.03 -26.51 -0.16 -1.65 16 6 C -0.14 -2.11 6.03 -28.10 -0.17 -2.28 16 7 C 0.50 11.09 7.45 -11.87 -0.09 11.01 16 8 O -0.56 -15.07 16.18 5.56 0.09 -14.98 16 9 N -0.59 -12.89 2.72 -168.59 -0.46 -13.34 16 10 C 0.24 6.37 4.33 -5.19 -0.02 6.34 16 11 C -0.52 -14.64 7.77 -34.44 -0.27 -14.91 16 12 H 0.06 1.58 7.34 -52.49 -0.39 1.19 16 13 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 14 N -0.90 -26.91 13.29 55.43 0.74 -26.18 16 15 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 16 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 18 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 19 H 0.06 1.22 7.41 -51.92 -0.38 0.84 16 20 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 21 H 0.08 1.55 6.43 -51.93 -0.33 1.21 16 22 H 0.07 0.98 8.11 -51.93 -0.42 0.56 16 23 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 24 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.07 0.80 8.12 -51.93 -0.42 0.38 16 26 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 27 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 28 H 0.05 1.37 7.13 -51.93 -0.37 1.00 16 29 H 0.03 0.82 7.09 -51.93 -0.37 0.45 16 30 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 245.52 15.07 3.70 3.70 Total: -1.00 -32.84 245.52 -6.18 -39.02 By element: Atomic # 1 Polarization: 0.95 SS G_CDS: -4.36 Total: -3.41 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: -0.87 Total: -1.86 kcal Atomic # 7 Polarization: -39.80 SS G_CDS: 0.28 Total: -39.52 kcal Atomic # 8 Polarization: -15.07 SS G_CDS: 0.09 Total: -14.98 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -32.84 -6.18 -39.02 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261053856.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.926 kcal (2) G-P(sol) polarization free energy of solvation -32.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds