Wall clock time and date at job start Mon Mar 30 2020 02:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.12953 * 2 1 4 4 C 1.53103 * 109.20721 * 119.66981 * 2 1 3 5 5 C 1.53345 * 108.52889 * 171.30378 * 4 2 1 6 6 C 1.53074 * 108.42361 * 292.30868 * 5 4 2 7 7 C 1.50179 * 109.89064 * 48.90154 * 6 5 4 8 8 O 1.21280 * 118.24566 * 162.39664 * 7 6 5 9 9 N 1.33355 * 123.50880 * 342.41717 * 7 6 5 10 10 C 1.46499 * 117.94311 * 182.22688 * 9 7 6 11 11 C 1.50701 * 109.47260 * 90.00226 * 10 9 7 12 12 H 1.08002 * 119.99761 * 359.97438 * 11 10 9 13 13 C 1.37871 * 119.99694 * 180.27562 * 11 10 9 14 14 N 1.31514 * 120.00482 * 359.71466 * 13 11 10 15 15 Si 1.86801 * 119.99746 * 179.72062 * 13 11 10 16 16 H 1.48504 * 109.47266 * 60.00049 * 15 13 11 17 17 H 1.48504 * 109.46970 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47383 * 299.99456 * 15 13 11 19 19 H 1.09009 * 109.46803 * 179.47825 * 1 2 3 20 20 H 1.09001 * 109.47083 * 299.47509 * 1 2 3 21 21 H 1.08997 * 109.47167 * 59.47777 * 1 2 3 22 22 H 1.08999 * 109.80979 * 51.51432 * 4 2 1 23 23 H 1.08996 * 109.67443 * 291.01393 * 4 2 1 24 24 H 1.08996 * 109.67625 * 172.57702 * 5 4 2 25 25 H 1.09000 * 109.67665 * 52.03820 * 5 4 2 26 26 H 1.08995 * 109.40445 * 288.77014 * 6 5 4 27 27 H 1.09004 * 109.33148 * 168.98271 * 6 5 4 28 28 H 1.09000 * 109.47197 * 329.99232 * 10 9 7 29 29 H 1.09007 * 109.46342 * 209.99804 * 10 9 7 30 30 H 0.96995 * 120.00207 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8872 1.0298 0.0000 4 6 2.0337 -0.7157 1.2562 5 6 3.5512 -0.9004 1.1364 6 6 3.8297 -1.8963 0.0078 7 6 3.0533 -1.5094 -1.2181 8 8 3.3918 -1.9790 -2.2839 9 7 2.0117 -0.6769 -1.1976 10 6 1.3114 -0.4223 -2.4589 11 6 0.2024 -1.4283 -2.6298 12 1 0.0362 -2.1822 -1.8745 13 6 -0.5959 -1.3900 -3.7532 14 7 -0.3933 -0.4722 -4.6730 15 14 -1.9655 -2.6419 -3.9687 16 1 -2.9257 -2.5240 -2.8420 17 1 -2.6723 -2.3867 -5.2495 18 1 -1.3878 -4.0098 -3.9857 19 1 -0.3633 -1.0277 -0.0094 20 1 -0.3633 0.5057 0.8947 21 1 -0.3633 0.5219 -0.8852 22 1 1.5526 -1.6897 1.3444 23 1 1.8069 -0.1147 2.1368 24 1 3.9489 -1.2881 2.0743 25 1 4.0203 0.0561 0.9058 26 1 3.5316 -2.8956 0.3248 27 1 4.8952 -1.8922 -0.2223 28 1 2.0131 -0.5105 -3.2883 29 1 0.8908 0.5832 -2.4442 30 1 -0.9547 -0.4455 -5.4635 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261053856.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:38 Heat of formation + Delta-G solvation = -71.569095 kcal Electronic energy + Delta-G solvation = -13097.187451 eV Core-core repulsion = 10890.901492 eV Total energy + Delta-G solvation = -2206.285959 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.29621 -37.74075 -35.71988 -34.08330 -32.04201 -29.23672 -27.89782 -25.23619 -23.16262 -22.75012 -19.43391 -18.69973 -17.34792 -17.28211 -16.39846 -16.07703 -15.37563 -14.99985 -14.42201 -14.03956 -13.86880 -13.62886 -13.10837 -13.05616 -12.77978 -12.54795 -12.44608 -12.13503 -11.82784 -11.77422 -11.56806 -11.46563 -10.62379 -10.38556 -9.43981 -8.20544 -6.33017 1.34802 1.39372 1.46360 1.87876 2.33458 2.48860 3.09210 3.77911 3.90299 3.95385 4.03955 4.44180 4.49882 4.62105 4.85824 4.91800 4.97037 5.01206 5.07003 5.15397 5.22971 5.31421 5.42294 5.57645 5.62743 5.84548 6.08953 6.72795 6.92016 7.31160 7.53231 8.87345 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.044397 B = 0.011870 C = 0.010827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.519421 B = 2358.387702 C = 2585.574734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.131 3.869 3 H 0.075 0.925 4 C -0.123 4.123 5 C -0.112 4.112 6 C -0.125 4.125 7 C 0.488 3.512 8 O -0.624 6.624 9 N -0.590 5.590 10 C 0.254 3.746 11 C -0.524 4.524 12 H 0.052 0.948 13 C 0.005 3.995 14 N -0.931 5.931 15 Si 0.964 3.036 16 H -0.259 1.259 17 H -0.279 1.279 18 H -0.279 1.279 19 H 0.044 0.956 20 H 0.091 0.909 21 H 0.038 0.962 22 H 0.066 0.934 23 H 0.116 0.884 24 H 0.110 0.890 25 H 0.072 0.928 26 H 0.104 0.896 27 H 0.102 0.898 28 H -0.007 1.007 29 H 0.021 0.979 30 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.281 0.961 15.452 15.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.029 3.971 3 H 0.093 0.907 4 C -0.161 4.161 5 C -0.149 4.149 6 C -0.164 4.164 7 C 0.277 3.723 8 O -0.508 6.508 9 N -0.320 5.320 10 C 0.133 3.867 11 C -0.563 4.563 12 H 0.070 0.930 13 C -0.194 4.194 14 N -0.571 5.571 15 Si 0.789 3.211 16 H -0.183 1.183 17 H -0.205 1.205 18 H -0.205 1.205 19 H 0.063 0.937 20 H 0.110 0.890 21 H 0.057 0.943 22 H 0.085 0.915 23 H 0.135 0.865 24 H 0.129 0.871 25 H 0.091 0.909 26 H 0.122 0.878 27 H 0.121 0.879 28 H 0.011 0.989 29 H 0.039 0.961 30 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.375 0.820 14.793 15.195 hybrid contribution -0.756 -0.521 -1.082 1.419 sum 2.619 0.299 13.711 13.962 Atomic orbital electron populations 1.22041 0.94325 1.02021 1.01952 1.21288 0.95280 0.96135 0.84436 0.90691 1.22000 0.96080 1.01631 0.96343 1.21670 0.95936 0.98974 0.98369 1.21677 1.00524 1.02257 0.91988 1.21163 0.80828 0.78417 0.91844 1.90644 1.69840 1.55853 1.34456 1.47761 1.29414 1.44034 1.10810 1.18736 0.90640 0.95605 0.81763 1.21541 1.14637 1.14727 1.05389 0.92980 1.25846 1.00476 0.97869 0.95188 1.70054 1.40903 1.35769 1.10396 0.85522 0.78854 0.78758 0.78015 1.18290 1.20456 1.20479 0.93698 0.89009 0.94277 0.91540 0.86544 0.87123 0.90933 0.87757 0.87924 0.98915 0.96143 0.92564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.89 8.00 71.98 0.58 -4.31 16 2 C 0.13 4.23 3.29 45.17 0.15 4.37 16 3 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 4 C -0.12 -2.70 5.31 30.74 0.16 -2.54 16 5 C -0.11 -2.23 6.03 30.73 0.19 -2.05 16 6 C -0.12 -3.58 6.03 29.71 0.18 -3.40 16 7 C 0.49 21.72 7.45 87.71 0.65 22.38 16 8 O -0.62 -35.28 16.18 -3.03 -0.05 -35.33 16 9 N -0.59 -26.33 2.72 -806.47 -2.19 -28.52 16 10 C 0.25 14.31 4.33 85.63 0.37 14.68 16 11 C -0.52 -30.79 7.77 25.60 0.20 -30.59 16 12 H 0.05 3.02 7.34 -2.91 -0.02 3.00 16 13 C 0.00 0.27 5.46 84.65 0.46 0.73 16 14 N -0.93 -57.83 13.29 21.45 0.28 -57.54 16 15 Si 0.96 45.85 29.54 68.60 2.03 47.87 16 16 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 17 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 18 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 19 H 0.04 1.66 7.41 -2.38 -0.02 1.64 16 20 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 21 H 0.04 1.58 6.43 -2.39 -0.02 1.57 16 22 H 0.07 1.56 8.11 -2.39 -0.02 1.54 16 23 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 24 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 25 H 0.07 1.41 8.12 -2.39 -0.02 1.39 16 26 H 0.10 2.73 8.14 -2.39 -0.02 2.71 16 27 H 0.10 2.69 8.14 -2.38 -0.02 2.67 16 28 H -0.01 -0.48 7.13 -2.39 -0.02 -0.50 16 29 H 0.02 1.17 7.09 -2.38 -0.02 1.16 16 30 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 Total: -1.00 -76.48 245.52 4.11 -72.36 By element: Atomic # 1 Polarization: 0.79 SS G_CDS: 1.11 Total: 1.89 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: 2.94 Total: -0.73 kcal Atomic # 7 Polarization: -84.15 SS G_CDS: -1.91 Total: -86.06 kcal Atomic # 8 Polarization: -35.28 SS G_CDS: -0.05 Total: -35.33 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.87 kcal Total: -76.48 4.11 -72.36 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261053856.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.793 kcal (2) G-P(sol) polarization free energy of solvation -76.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds