Wall clock time and date at job start Mon Mar 30 2020 02:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09005 * 109.47313 * 2 1 4 4 C 1.50701 * 109.47557 * 240.00356 * 2 1 3 5 5 H 1.08003 * 119.99727 * 274.99192 * 4 2 1 6 6 C 1.37869 * 120.00296 * 94.98642 * 4 2 1 7 7 N 1.31512 * 119.99993 * 184.90853 * 6 4 2 8 8 Si 1.86806 * 120.00171 * 4.91159 * 6 4 2 9 9 H 1.48497 * 109.46833 * 84.81217 * 8 6 4 10 10 H 1.48496 * 109.47379 * 204.81414 * 8 6 4 11 11 H 1.48504 * 109.46775 * 324.81447 * 8 6 4 12 12 N 1.46507 * 109.47201 * 119.99887 * 2 1 3 13 13 C 1.46762 * 124.35121 * 239.72480 * 12 2 1 14 14 C 1.54477 * 105.47194 * 163.24822 * 13 12 2 15 15 C 1.54628 * 101.76572 * 25.41776 * 14 13 12 16 16 H 1.09004 * 110.48536 * 93.87647 * 15 14 13 17 17 C 1.52999 * 110.60251 * 216.46706 * 15 14 13 18 18 C 1.34418 * 124.34630 * 60.02824 * 12 2 1 19 19 O 1.21280 * 124.94258 * 0.16151 * 18 12 2 20 20 H 1.09002 * 109.47260 * 174.89045 * 1 2 3 21 21 H 1.08995 * 109.47548 * 294.89296 * 1 2 3 22 22 H 1.09001 * 109.46905 * 54.89164 * 1 2 3 23 23 H 0.97007 * 119.99761 * 180.02562 * 7 6 4 24 24 H 1.09001 * 110.24916 * 282.25431 * 13 12 2 25 25 H 1.09005 * 110.24025 * 44.25111 * 13 12 2 26 26 H 1.09003 * 110.97211 * 267.29916 * 14 13 12 27 27 H 1.09000 * 111.00089 * 143.55307 * 14 13 12 28 28 H 1.08995 * 109.47293 * 176.29719 * 17 15 14 29 29 H 1.08997 * 109.46963 * 296.29772 * 17 15 14 30 30 H 1.08997 * 109.46851 * 56.29317 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.1357 -1.7854 -1.2290 6 6 2.3601 0.0121 -2.3581 7 7 2.7060 -0.6131 -3.4621 8 14 2.3128 1.8792 -2.3176 9 1 3.5981 2.3953 -1.7820 10 1 2.1054 2.3990 -3.6931 11 1 1.1975 2.3273 -1.4456 12 7 2.0183 -0.6906 1.1962 13 6 2.8703 -0.0729 2.2192 14 6 2.7701 -0.9980 3.4524 15 6 2.4094 -2.3533 2.8013 16 1 3.3098 -2.9395 2.6169 17 6 1.4359 -3.1338 3.6868 18 6 1.7484 -1.9731 1.4948 19 8 1.0734 -2.7173 0.8155 20 1 -0.3634 -1.0236 -0.0915 21 1 -0.3634 0.4325 0.9321 22 1 -0.3633 0.5910 -0.8407 23 1 2.9369 -0.1047 -4.2554 24 1 3.9014 -0.0203 1.8699 25 1 2.5030 0.9236 2.4644 26 1 1.9798 -0.6661 4.1258 27 1 3.7251 -1.0578 3.9744 28 1 1.1433 -4.0542 3.1816 29 1 1.9200 -3.3766 4.6327 30 1 0.5510 -2.5265 3.8769 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261077938.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:46 Heat of formation + Delta-G solvation = -41.942408 kcal Electronic energy + Delta-G solvation = -13044.177305 eV Core-core repulsion = 10839.176055 eV Total energy + Delta-G solvation = -2205.001249 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.73302 -35.51236 -34.53894 -32.17118 -30.27143 -27.78767 -25.22403 -24.66895 -21.75310 -20.63136 -18.14350 -17.09499 -15.98072 -15.54265 -14.34327 -13.98621 -13.49678 -13.45078 -12.93678 -12.63210 -12.40615 -12.15236 -11.73396 -11.67787 -11.24781 -11.09100 -10.81262 -10.67398 -10.54451 -10.44788 -9.79871 -9.41041 -8.63785 -8.50470 -7.59509 -6.09673 -4.09526 3.21321 3.29663 3.31301 3.53799 3.98711 4.34989 4.77457 4.87771 5.03853 5.25239 5.44242 5.62029 5.75339 5.80054 5.93501 6.07167 6.11245 6.27844 6.29717 6.41663 6.49825 6.68683 6.79540 7.31174 7.59103 7.62239 8.21458 8.56151 9.06953 9.18661 9.51472 11.03541 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.049513 B = 0.011909 C = 0.011089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.370477 B = 2350.652519 C = 2524.442485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.246 3.754 3 H 0.043 0.957 4 C -0.514 4.514 5 H 0.085 0.915 6 C 0.073 3.927 7 N -0.892 5.892 8 Si 0.871 3.129 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.265 1.265 12 N -0.600 5.600 13 C 0.098 3.902 14 C -0.127 4.127 15 C -0.133 4.133 16 H 0.100 0.900 17 C -0.129 4.129 18 C 0.517 3.483 19 O -0.528 6.528 20 H 0.063 0.937 21 H 0.022 0.978 22 H 0.052 0.948 23 H 0.265 0.735 24 H 0.065 0.935 25 H 0.068 0.932 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.063 0.937 29 H 0.057 0.943 30 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.546 2.383 13.808 14.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.146 3.854 3 H 0.061 0.939 4 C -0.553 4.553 5 H 0.103 0.897 6 C -0.130 4.130 7 N -0.530 5.530 8 Si 0.698 3.302 9 H -0.200 1.200 10 H -0.211 1.211 11 H -0.190 1.190 12 N -0.333 5.333 13 C -0.026 4.026 14 C -0.165 4.165 15 C -0.155 4.155 16 H 0.118 0.882 17 C -0.187 4.187 18 C 0.303 3.697 19 O -0.404 6.404 20 H 0.082 0.918 21 H 0.041 0.959 22 H 0.071 0.929 23 H 0.075 0.925 24 H 0.083 0.917 25 H 0.086 0.914 26 H 0.095 0.905 27 H 0.100 0.900 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.210 2.083 13.152 13.317 hybrid contribution 0.206 1.136 -0.172 1.167 sum 0.417 3.219 12.980 13.379 Atomic orbital electron populations 1.22239 0.98081 1.02205 0.98424 1.19135 0.91140 0.92234 0.82888 0.93950 1.21274 1.42946 0.96562 0.94521 0.89702 1.25022 0.94536 0.98085 0.95347 1.69907 1.45720 1.35722 1.01636 0.86967 0.78983 0.86624 0.77623 1.20039 1.21110 1.18953 1.48879 1.49339 1.12022 1.23110 1.21983 0.95751 0.96825 0.88013 1.22666 1.02401 0.94384 0.97047 1.21992 1.00488 0.97323 0.95648 0.88202 1.21568 0.98305 1.00454 0.98376 1.20452 0.80653 0.82259 0.86328 1.90652 1.40043 1.54357 1.55372 0.91755 0.95902 0.92877 0.92514 0.91667 0.91404 0.90538 0.90031 0.91749 0.92412 0.92685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.48 9.11 37.15 0.34 -3.14 16 2 C 0.25 6.00 2.52 -69.08 -0.17 5.83 16 3 H 0.04 1.00 5.22 -51.93 -0.27 0.72 16 4 C -0.51 -15.03 8.67 -34.44 -0.30 -15.33 16 5 H 0.08 2.85 7.19 -52.48 -0.38 2.47 16 6 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 7 N -0.89 -27.69 13.96 55.43 0.77 -26.92 16 8 Si 0.87 21.05 26.99 -169.99 -4.59 16.46 16 9 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.26 -6.05 6.82 56.52 0.39 -5.66 16 12 N -0.60 -12.83 2.82 -166.16 -0.47 -13.30 16 13 C 0.10 1.55 7.30 -3.12 -0.02 1.52 16 14 C -0.13 -1.58 6.70 -25.10 -0.17 -1.75 16 15 C -0.13 -2.05 3.52 -90.63 -0.32 -2.37 16 16 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 17 C -0.13 -1.71 9.08 37.16 0.34 -1.38 16 18 C 0.52 11.19 6.78 -10.86 -0.07 11.12 16 19 O -0.53 -13.71 15.39 5.56 0.09 -13.62 16 20 H 0.06 1.60 6.96 -51.93 -0.36 1.24 16 21 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 22 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 23 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 24 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 25 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.08 0.85 7.91 -51.93 -0.41 0.44 16 27 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.73 8.13 -51.93 -0.42 0.30 16 LS Contribution 248.21 15.07 3.74 3.74 Total: -1.00 -33.49 248.21 -5.31 -38.81 By element: Atomic # 1 Polarization: 2.67 SS G_CDS: -4.38 Total: -1.70 kcal Atomic # 6 Polarization: -2.99 SS G_CDS: -0.48 Total: -3.47 kcal Atomic # 7 Polarization: -40.52 SS G_CDS: 0.30 Total: -40.21 kcal Atomic # 8 Polarization: -13.71 SS G_CDS: 0.09 Total: -13.62 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.59 Total: 16.46 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -33.49 -5.31 -38.81 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261077938.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.137 kcal (2) G-P(sol) polarization free energy of solvation -33.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds