Wall clock time and date at job start Mon Mar 30 2020 02:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09005 * 109.47313 * 2 1 4 4 C 1.50701 * 109.47557 * 240.00356 * 2 1 3 5 5 H 1.08003 * 119.99727 * 274.99192 * 4 2 1 6 6 C 1.37869 * 120.00296 * 94.98642 * 4 2 1 7 7 N 1.31512 * 119.99993 * 184.90853 * 6 4 2 8 8 Si 1.86806 * 120.00171 * 4.91159 * 6 4 2 9 9 H 1.48497 * 109.46833 * 84.81217 * 8 6 4 10 10 H 1.48496 * 109.47379 * 204.81414 * 8 6 4 11 11 H 1.48504 * 109.46775 * 324.81447 * 8 6 4 12 12 N 1.46507 * 109.47201 * 119.99887 * 2 1 3 13 13 C 1.46762 * 124.35121 * 239.72480 * 12 2 1 14 14 C 1.54477 * 105.47194 * 163.24822 * 13 12 2 15 15 C 1.54628 * 101.76572 * 25.41776 * 14 13 12 16 16 H 1.09004 * 110.48536 * 93.87647 * 15 14 13 17 17 C 1.52999 * 110.60251 * 216.46706 * 15 14 13 18 18 C 1.34418 * 124.34630 * 60.02824 * 12 2 1 19 19 O 1.21280 * 124.94258 * 0.16151 * 18 12 2 20 20 H 1.09002 * 109.47260 * 174.89045 * 1 2 3 21 21 H 1.08995 * 109.47548 * 294.89296 * 1 2 3 22 22 H 1.09001 * 109.46905 * 54.89164 * 1 2 3 23 23 H 0.97007 * 119.99761 * 180.02562 * 7 6 4 24 24 H 1.09001 * 110.24916 * 282.25431 * 13 12 2 25 25 H 1.09005 * 110.24025 * 44.25111 * 13 12 2 26 26 H 1.09003 * 110.97211 * 267.29916 * 14 13 12 27 27 H 1.09000 * 111.00089 * 143.55307 * 14 13 12 28 28 H 1.08995 * 109.47293 * 176.29719 * 17 15 14 29 29 H 1.08997 * 109.46963 * 296.29772 * 17 15 14 30 30 H 1.08997 * 109.46851 * 56.29317 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.1357 -1.7854 -1.2290 6 6 2.3601 0.0121 -2.3581 7 7 2.7060 -0.6131 -3.4621 8 14 2.3128 1.8792 -2.3176 9 1 3.5981 2.3953 -1.7820 10 1 2.1054 2.3990 -3.6931 11 1 1.1975 2.3273 -1.4456 12 7 2.0183 -0.6906 1.1962 13 6 2.8703 -0.0729 2.2192 14 6 2.7701 -0.9980 3.4524 15 6 2.4094 -2.3533 2.8013 16 1 3.3098 -2.9395 2.6169 17 6 1.4359 -3.1338 3.6868 18 6 1.7484 -1.9731 1.4948 19 8 1.0734 -2.7173 0.8155 20 1 -0.3634 -1.0236 -0.0915 21 1 -0.3634 0.4325 0.9321 22 1 -0.3633 0.5910 -0.8407 23 1 2.9369 -0.1047 -4.2554 24 1 3.9014 -0.0203 1.8699 25 1 2.5030 0.9236 2.4644 26 1 1.9798 -0.6661 4.1258 27 1 3.7251 -1.0578 3.9744 28 1 1.1433 -4.0542 3.1816 29 1 1.9200 -3.3766 4.6327 30 1 0.5510 -2.5265 3.8769 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261077938.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:46 Heat of formation + Delta-G solvation = -66.197598 kcal Electronic energy + Delta-G solvation = -13045.229089 eV Core-core repulsion = 10839.176055 eV Total energy + Delta-G solvation = -2206.053033 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.26718 -37.20554 -36.25594 -34.13921 -31.88397 -29.14737 -27.34705 -26.02023 -23.29754 -22.08354 -19.87047 -19.08033 -17.54693 -17.22284 -15.91370 -15.84570 -15.04874 -14.71089 -14.64551 -14.39599 -14.02341 -13.77004 -13.14823 -12.92552 -12.84701 -12.77073 -12.56634 -12.36690 -11.83255 -11.80280 -11.70822 -11.41657 -10.79370 -10.26400 -9.30819 -8.33069 -6.41326 1.31988 1.35222 1.46156 1.89948 2.30322 2.42153 3.06420 3.52346 3.72270 4.00194 4.29537 4.36174 4.52276 4.59663 4.68084 4.75196 4.83156 4.86275 4.94329 5.03422 5.15608 5.24296 5.37240 5.44371 5.51096 5.85190 6.32036 6.66830 6.68825 7.21337 7.56272 8.85102 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.049513 B = 0.011909 C = 0.011089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.370477 B = 2350.652519 C = 2524.442485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.245 3.755 3 H 0.064 0.936 4 C -0.527 4.527 5 H 0.017 0.983 6 C 0.008 3.992 7 N -0.950 5.950 8 Si 0.952 3.048 9 H -0.255 1.255 10 H -0.284 1.284 11 H -0.236 1.236 12 N -0.612 5.612 13 C 0.085 3.915 14 C -0.106 4.106 15 C -0.126 4.126 16 H 0.106 0.894 17 C -0.124 4.124 18 C 0.493 3.507 19 O -0.591 6.591 20 H 0.030 0.970 21 H 0.057 0.943 22 H 0.054 0.946 23 H 0.268 0.732 24 H 0.068 0.932 25 H 0.095 0.905 26 H 0.099 0.901 27 H 0.121 0.879 28 H 0.040 0.960 29 H 0.098 0.902 30 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.124 5.182 16.910 17.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.144 3.856 3 H 0.082 0.918 4 C -0.565 4.565 5 H 0.035 0.965 6 C -0.190 4.190 7 N -0.589 5.589 8 Si 0.773 3.227 9 H -0.179 1.179 10 H -0.210 1.210 11 H -0.159 1.159 12 N -0.344 5.344 13 C -0.037 4.037 14 C -0.143 4.143 15 C -0.148 4.148 16 H 0.124 0.876 17 C -0.182 4.182 18 C 0.282 3.718 19 O -0.472 6.472 20 H 0.049 0.951 21 H 0.076 0.924 22 H 0.073 0.927 23 H 0.077 0.923 24 H 0.086 0.914 25 H 0.113 0.887 26 H 0.117 0.883 27 H 0.140 0.860 28 H 0.060 0.940 29 H 0.117 0.883 30 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.809 4.892 16.316 17.053 hybrid contribution 0.040 0.137 -1.158 1.167 sum 0.849 5.030 15.158 15.993 Atomic orbital electron populations 1.22112 0.97333 1.00477 1.00328 1.18945 0.91754 0.92665 0.82279 0.91828 1.21390 1.43720 0.93791 0.97606 0.96501 1.26114 0.93662 1.04958 0.94250 1.70102 1.47480 1.38565 1.02773 0.85697 0.80731 0.77999 0.78296 1.17899 1.21030 1.15924 1.48911 1.49778 1.12508 1.23225 1.22411 0.94872 0.98656 0.87755 1.22719 1.05319 0.90601 0.95702 1.22042 1.00394 0.99793 0.92552 0.87564 1.21572 0.98204 0.99058 0.99361 1.21711 0.80006 0.81963 0.88119 1.90605 1.42807 1.55952 1.57816 0.95113 0.92361 0.92678 0.92280 0.91404 0.88674 0.88259 0.86037 0.94041 0.88293 0.92680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.56 9.11 71.98 0.66 -5.90 16 2 C 0.25 11.83 2.52 44.24 0.11 11.94 16 3 H 0.06 2.79 5.22 -2.38 -0.01 2.78 16 4 C -0.53 -32.09 8.67 25.60 0.22 -31.87 16 5 H 0.02 1.21 7.19 -2.91 -0.02 1.19 16 6 C 0.01 0.45 5.47 84.65 0.46 0.91 16 7 N -0.95 -61.53 13.96 21.44 0.30 -61.23 16 8 Si 0.95 42.82 26.99 68.60 1.85 44.67 16 9 H -0.25 -10.62 7.11 99.48 0.71 -9.91 16 10 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 11 H -0.24 -9.48 6.82 99.48 0.68 -8.80 16 12 N -0.61 -25.61 2.82 -798.20 -2.25 -27.86 16 13 C 0.09 2.36 7.30 86.83 0.63 2.99 16 14 C -0.11 -2.10 6.70 31.65 0.21 -1.89 16 15 C -0.13 -3.63 3.52 -10.80 -0.04 -3.66 16 16 H 0.11 2.91 8.14 -2.39 -0.02 2.90 16 17 C -0.12 -3.01 9.08 71.98 0.65 -2.35 16 18 C 0.49 21.67 6.78 87.90 0.60 22.27 16 19 O -0.59 -32.70 15.39 -3.03 -0.05 -32.74 16 20 H 0.03 1.57 6.96 -2.39 -0.02 1.55 16 21 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 22 H 0.05 2.42 8.14 -2.39 -0.02 2.40 16 23 H 0.27 16.03 8.31 -92.70 -0.77 15.26 16 24 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 25 H 0.09 2.14 8.14 -2.38 -0.02 2.12 16 26 H 0.10 1.59 7.91 -2.39 -0.02 1.57 16 27 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.05 1.32 8.13 -2.39 -0.02 1.30 16 Total: -1.00 -80.54 248.21 4.44 -76.10 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: 1.08 Total: 8.62 kcal Atomic # 6 Polarization: -11.07 SS G_CDS: 3.51 Total: -7.56 kcal Atomic # 7 Polarization: -87.13 SS G_CDS: -1.95 Total: -89.09 kcal Atomic # 8 Polarization: -32.70 SS G_CDS: -0.05 Total: -32.74 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 1.85 Total: 44.67 kcal Total: -80.54 4.44 -76.10 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261077938.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.901 kcal (2) G-P(sol) polarization free energy of solvation -80.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds