Wall clock time and date at job start Mon Mar 30 2020 02:23:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47231 * 2 1 4 4 C 1.50701 * 109.46856 * 240.00311 * 2 1 3 5 5 H 1.08002 * 120.00134 * 239.99796 * 4 2 1 6 6 C 1.37883 * 119.99919 * 59.99920 * 4 2 1 7 7 N 1.31507 * 119.99948 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99756 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47243 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.47063 * 120.00537 * 8 6 4 11 11 H 1.48507 * 109.46923 * 240.00272 * 8 6 4 12 12 N 1.46497 * 109.47287 * 120.00873 * 2 1 3 13 13 C 1.46768 * 124.34381 * 240.00174 * 12 2 1 14 14 C 1.54487 * 105.46844 * 197.01165 * 13 12 2 15 15 C 1.54619 * 101.76557 * 334.58255 * 14 13 12 16 16 H 1.09005 * 110.49113 * 266.11989 * 15 14 13 17 17 C 1.53005 * 110.48897 * 143.47875 * 15 14 13 18 18 C 1.34413 * 124.35463 * 59.99372 * 12 2 1 19 19 O 1.21283 * 124.94031 * 359.62849 * 18 12 2 20 20 H 1.09006 * 109.47673 * 59.99583 * 1 2 3 21 21 H 1.09004 * 109.47352 * 179.97438 * 1 2 3 22 22 H 1.09005 * 109.47208 * 299.99557 * 1 2 3 23 23 H 0.97001 * 119.99747 * 179.97438 * 7 6 4 24 24 H 1.09000 * 110.25007 * 78.01166 * 13 12 2 25 25 H 1.09004 * 110.24485 * 316.00872 * 13 12 2 26 26 H 1.08996 * 110.96729 * 92.70209 * 14 13 12 27 27 H 1.08996 * 110.96659 * 216.42397 * 14 13 12 28 28 H 1.08995 * 109.46859 * 59.99421 * 17 15 14 29 29 H 1.08996 * 109.47319 * 180.02562 * 17 15 14 30 30 H 1.09001 * 109.46786 * 299.99871 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6991 -0.2392 -2.4828 7 7 0.9426 0.8297 -2.6033 8 14 2.3223 -1.1194 -4.0081 9 1 3.1482 -2.2855 -3.6040 10 1 1.1675 -1.5863 -4.8167 11 1 3.1471 -0.1855 -4.8162 12 7 2.0183 -0.6908 1.1960 13 6 2.8656 -0.0714 2.2220 14 6 3.4724 -1.2468 3.0200 15 6 2.4204 -2.3573 2.7944 16 1 1.6968 -2.3687 3.6096 17 6 3.1013 -3.7211 2.6622 18 6 1.7480 -1.9731 1.4949 19 8 1.0649 -2.7144 0.8205 20 1 -0.3635 0.5139 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8901 23 1 0.7086 1.1614 -3.4843 24 1 2.2646 0.5590 2.8774 25 1 3.6564 0.5152 1.7544 26 1 4.4401 -1.5374 2.6112 27 1 3.5569 -0.9977 4.0777 28 1 3.6571 -3.9396 3.5740 29 1 2.3458 -4.4906 2.5035 30 1 3.7862 -3.7046 1.8144 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261077941.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:48 Heat of formation + Delta-G solvation = -42.673891 kcal Electronic energy + Delta-G solvation = -13050.775379 eV Core-core repulsion = 10845.742410 eV Total energy + Delta-G solvation = -2205.032969 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.64373 -35.43248 -34.47817 -32.16025 -29.63892 -27.51605 -25.12860 -24.61556 -21.75795 -20.60848 -18.21475 -16.36091 -16.15535 -15.25647 -14.30281 -14.03119 -13.46215 -13.23081 -12.97305 -12.44066 -12.31970 -11.80904 -11.62594 -11.32910 -10.98039 -10.77413 -10.72774 -10.54902 -10.43201 -10.22689 -10.02620 -9.24492 -8.61036 -8.27498 -7.52227 -6.00914 -4.05084 3.32522 3.40046 3.45961 3.59051 4.13908 4.49463 4.83209 4.93708 5.10313 5.31093 5.50783 5.66464 5.79500 5.85919 6.03928 6.11869 6.19760 6.32599 6.48164 6.77401 6.98580 7.14710 7.29397 7.77075 7.84785 8.12436 8.16463 8.52950 8.94638 9.27460 9.61495 11.04841 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.042974 B = 0.011931 C = 0.010930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.407111 B = 2346.202203 C = 2561.212842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.277 3.723 3 H 0.043 0.957 4 C -0.507 4.507 5 H 0.059 0.941 6 C 0.060 3.940 7 N -0.896 5.896 8 Si 0.900 3.100 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.285 1.285 12 N -0.602 5.602 13 C 0.101 3.899 14 C -0.128 4.128 15 C -0.133 4.133 16 H 0.096 0.904 17 C -0.129 4.129 18 C 0.514 3.486 19 O -0.528 6.528 20 H 0.092 0.908 21 H 0.045 0.955 22 H 0.006 0.994 23 H 0.261 0.739 24 H 0.059 0.941 25 H 0.072 0.928 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.722 -1.912 10.411 11.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.178 3.822 3 H 0.061 0.939 4 C -0.545 4.545 5 H 0.077 0.923 6 C -0.140 4.140 7 N -0.535 5.535 8 Si 0.728 3.272 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.211 1.211 12 N -0.335 5.335 13 C -0.024 4.024 14 C -0.166 4.166 15 C -0.155 4.155 16 H 0.114 0.886 17 C -0.187 4.187 18 C 0.299 3.701 19 O -0.404 6.404 20 H 0.110 0.890 21 H 0.064 0.936 22 H 0.025 0.975 23 H 0.071 0.929 24 H 0.077 0.923 25 H 0.091 0.909 26 H 0.096 0.904 27 H 0.098 0.902 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.250 -2.121 9.818 10.907 hybrid contribution 0.309 -0.268 -0.805 0.903 sum 4.559 -2.389 9.013 10.380 Atomic orbital electron populations 1.22111 0.97943 1.00862 1.00143 1.18778 0.91322 0.92135 0.79972 0.93891 1.21358 1.30892 1.12255 0.90031 0.92296 1.24867 0.95125 0.95090 0.98958 1.69877 1.37043 1.23110 1.23515 0.86405 0.78624 0.79590 0.82616 1.19809 1.20914 1.21090 1.48808 1.49738 1.11739 1.23209 1.21939 0.94372 0.95559 0.90493 1.22664 0.98584 0.94866 1.00441 1.21994 0.98504 0.96569 0.98417 0.88604 1.21558 1.00464 0.95286 1.01381 1.20454 0.81019 0.82443 0.86164 1.90643 1.39807 1.54660 1.55304 0.88966 0.93611 0.97486 0.92908 0.92329 0.90929 0.90379 0.90226 0.92493 0.91947 0.92424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.96 8.97 37.16 0.33 -3.63 16 2 C 0.28 7.22 2.86 -69.08 -0.20 7.02 16 3 H 0.04 1.15 8.07 -51.93 -0.42 0.73 16 4 C -0.51 -14.62 8.07 -34.44 -0.28 -14.90 16 5 H 0.06 1.78 7.69 -52.49 -0.40 1.37 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 7 N -0.90 -25.91 11.32 55.43 0.63 -25.28 16 8 Si 0.90 22.37 29.54 -169.99 -5.02 17.35 16 9 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 10 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 11 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 12 N -0.60 -13.28 2.82 -166.16 -0.47 -13.75 16 13 C 0.10 1.63 7.30 -3.12 -0.02 1.61 16 14 C -0.13 -1.68 6.70 -25.10 -0.17 -1.84 16 15 C -0.13 -2.09 3.53 -90.63 -0.32 -2.41 16 16 H 0.10 1.35 8.14 -51.93 -0.42 0.92 16 17 C -0.13 -1.83 9.07 37.16 0.34 -1.50 16 18 C 0.51 11.36 6.75 -10.86 -0.07 11.29 16 19 O -0.53 -13.95 15.81 5.56 0.09 -13.86 16 20 H 0.09 2.56 6.07 -51.93 -0.32 2.25 16 21 H 0.04 1.26 6.78 -51.93 -0.35 0.90 16 22 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 23 H 0.26 7.16 8.31 -40.82 -0.34 6.83 16 24 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 25 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 26 H 0.08 0.99 7.91 -51.93 -0.41 0.58 16 27 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 249.33 15.07 3.76 3.76 Total: -1.00 -32.16 249.33 -5.92 -38.08 By element: Atomic # 1 Polarization: 0.86 SS G_CDS: -4.42 Total: -3.56 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: -0.48 Total: -2.73 kcal Atomic # 7 Polarization: -39.18 SS G_CDS: 0.16 Total: -39.03 kcal Atomic # 8 Polarization: -13.95 SS G_CDS: 0.09 Total: -13.86 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -32.16 -5.92 -38.08 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261077941.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.597 kcal (2) G-P(sol) polarization free energy of solvation -32.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds