Wall clock time and date at job start Mon Mar 30 2020 02:23:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47231 * 2 1 4 4 C 1.50701 * 109.46856 * 240.00311 * 2 1 3 5 5 H 1.08002 * 120.00134 * 239.99796 * 4 2 1 6 6 C 1.37883 * 119.99919 * 59.99920 * 4 2 1 7 7 N 1.31507 * 119.99948 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99756 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47243 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.47063 * 120.00537 * 8 6 4 11 11 H 1.48507 * 109.46923 * 240.00272 * 8 6 4 12 12 N 1.46497 * 109.47287 * 120.00873 * 2 1 3 13 13 C 1.46768 * 124.34381 * 240.00174 * 12 2 1 14 14 C 1.54487 * 105.46844 * 197.01165 * 13 12 2 15 15 C 1.54619 * 101.76557 * 334.58255 * 14 13 12 16 16 H 1.09005 * 110.49113 * 266.11989 * 15 14 13 17 17 C 1.53005 * 110.48897 * 143.47875 * 15 14 13 18 18 C 1.34413 * 124.35463 * 59.99372 * 12 2 1 19 19 O 1.21283 * 124.94031 * 359.62849 * 18 12 2 20 20 H 1.09006 * 109.47673 * 59.99583 * 1 2 3 21 21 H 1.09004 * 109.47352 * 179.97438 * 1 2 3 22 22 H 1.09005 * 109.47208 * 299.99557 * 1 2 3 23 23 H 0.97001 * 119.99747 * 179.97438 * 7 6 4 24 24 H 1.09000 * 110.25007 * 78.01166 * 13 12 2 25 25 H 1.09004 * 110.24485 * 316.00872 * 13 12 2 26 26 H 1.08996 * 110.96729 * 92.70209 * 14 13 12 27 27 H 1.08996 * 110.96659 * 216.42397 * 14 13 12 28 28 H 1.08995 * 109.46859 * 59.99421 * 17 15 14 29 29 H 1.08996 * 109.47319 * 180.02562 * 17 15 14 30 30 H 1.09001 * 109.46786 * 299.99871 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6991 -0.2392 -2.4828 7 7 0.9426 0.8297 -2.6033 8 14 2.3223 -1.1194 -4.0081 9 1 3.1482 -2.2855 -3.6040 10 1 1.1675 -1.5863 -4.8167 11 1 3.1471 -0.1855 -4.8162 12 7 2.0183 -0.6908 1.1960 13 6 2.8656 -0.0714 2.2220 14 6 3.4724 -1.2468 3.0200 15 6 2.4204 -2.3573 2.7944 16 1 1.6968 -2.3687 3.6096 17 6 3.1013 -3.7211 2.6622 18 6 1.7480 -1.9731 1.4949 19 8 1.0649 -2.7144 0.8205 20 1 -0.3635 0.5139 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8901 23 1 0.7086 1.1614 -3.4843 24 1 2.2646 0.5590 2.8774 25 1 3.6564 0.5152 1.7544 26 1 4.4401 -1.5374 2.6112 27 1 3.5569 -0.9977 4.0777 28 1 3.6571 -3.9396 3.5740 29 1 2.3458 -4.4906 2.5035 30 1 3.7862 -3.7046 1.8144 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261077941.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:48 Heat of formation + Delta-G solvation = -64.040259 kcal Electronic energy + Delta-G solvation = -13051.701894 eV Core-core repulsion = 10845.742410 eV Total energy + Delta-G solvation = -2205.959484 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.21811 -37.15126 -36.31337 -33.98190 -31.35923 -29.01926 -27.33274 -26.01610 -23.43192 -22.07434 -19.93859 -18.39974 -17.65534 -17.10800 -16.12937 -15.74225 -14.89611 -14.78303 -14.46675 -14.40394 -13.68373 -13.52920 -13.02273 -12.97349 -12.87992 -12.73919 -12.38154 -12.30261 -12.16934 -11.87393 -11.63817 -11.29106 -10.65581 -10.18350 -9.30199 -8.19002 -6.31087 1.33071 1.36071 1.47506 1.92361 2.34896 2.58481 3.07979 3.55544 3.72876 4.01318 4.33988 4.50414 4.60178 4.68249 4.79689 4.87951 4.89231 4.97056 5.05842 5.15445 5.22773 5.31135 5.38106 5.58068 5.77227 6.09008 6.14123 6.67514 6.80141 7.32104 7.62120 8.84997 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.042974 B = 0.011931 C = 0.010930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.407111 B = 2346.202203 C = 2561.212842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.277 3.723 3 H 0.034 0.966 4 C -0.526 4.526 5 H 0.035 0.965 6 C 0.017 3.983 7 N -0.914 5.914 8 Si 0.957 3.043 9 H -0.280 1.280 10 H -0.280 1.280 11 H -0.267 1.267 12 N -0.614 5.614 13 C 0.089 3.911 14 C -0.109 4.109 15 C -0.123 4.123 16 H 0.121 0.879 17 C -0.126 4.126 18 C 0.492 3.508 19 O -0.587 6.587 20 H 0.071 0.929 21 H 0.020 0.980 22 H 0.030 0.970 23 H 0.266 0.734 24 H 0.082 0.918 25 H 0.074 0.926 26 H 0.084 0.916 27 H 0.128 0.872 28 H 0.100 0.900 29 H 0.047 0.953 30 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.061 -1.817 12.137 13.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.176 3.824 3 H 0.052 0.948 4 C -0.565 4.565 5 H 0.053 0.947 6 C -0.182 4.182 7 N -0.554 5.554 8 Si 0.783 3.217 9 H -0.205 1.205 10 H -0.206 1.206 11 H -0.192 1.192 12 N -0.346 5.346 13 C -0.033 4.033 14 C -0.147 4.147 15 C -0.144 4.144 16 H 0.139 0.861 17 C -0.184 4.184 18 C 0.280 3.720 19 O -0.468 6.468 20 H 0.089 0.911 21 H 0.039 0.961 22 H 0.049 0.951 23 H 0.075 0.925 24 H 0.100 0.900 25 H 0.093 0.907 26 H 0.102 0.898 27 H 0.146 0.854 28 H 0.119 0.881 29 H 0.066 0.934 30 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 5.619 -1.996 11.581 13.026 hybrid contribution -0.126 -0.267 -1.322 1.355 sum 5.493 -2.263 10.258 11.855 Atomic orbital electron populations 1.21900 0.98371 0.99100 1.00211 1.18459 0.91034 0.91683 0.81220 0.94826 1.21487 1.31261 1.11845 0.91908 0.94661 1.25590 0.95286 0.95814 1.01535 1.69953 1.37283 1.23748 1.24376 0.85522 0.78223 0.78557 0.79402 1.20470 1.20567 1.19198 1.48879 1.50306 1.12311 1.23114 1.22336 0.94174 0.97100 0.89730 1.22723 0.97422 0.91769 1.02757 1.22036 0.99349 0.98121 0.94882 0.86093 1.21575 0.99965 0.94009 1.02826 1.21713 0.80361 0.81897 0.88015 1.90591 1.42380 1.56068 1.57778 0.91059 0.96080 0.95127 0.92483 0.89964 0.90708 0.89773 0.85355 0.88084 0.93414 0.94183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.32 8.97 71.98 0.65 -6.67 16 2 C 0.28 14.72 2.86 44.25 0.13 14.84 16 3 H 0.03 1.83 8.07 -2.39 -0.02 1.81 16 4 C -0.53 -31.22 8.07 25.60 0.21 -31.02 16 5 H 0.04 2.20 7.69 -2.91 -0.02 2.18 16 6 C 0.02 0.98 5.30 84.66 0.45 1.43 16 7 N -0.91 -53.48 11.32 21.45 0.24 -53.24 16 8 Si 0.96 46.44 29.54 68.60 2.03 48.46 16 9 H -0.28 -13.73 7.11 99.48 0.71 -13.02 16 10 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 11 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 12 N -0.61 -26.92 2.82 -798.20 -2.25 -29.17 16 13 C 0.09 2.65 7.30 86.83 0.63 3.28 16 14 C -0.11 -2.38 6.70 31.65 0.21 -2.17 16 15 C -0.12 -3.51 3.53 -10.80 -0.04 -3.55 16 16 H 0.12 2.91 8.14 -2.38 -0.02 2.89 16 17 C -0.13 -3.27 9.07 71.98 0.65 -2.62 16 18 C 0.49 21.74 6.75 87.90 0.59 22.33 16 19 O -0.59 -32.16 15.81 -3.04 -0.05 -32.21 16 20 H 0.07 4.07 6.07 -2.38 -0.01 4.05 16 21 H 0.02 1.17 6.78 -2.39 -0.02 1.16 16 22 H 0.03 1.42 8.14 -2.38 -0.02 1.40 16 23 H 0.27 14.64 8.31 -92.71 -0.77 13.87 16 24 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 25 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 26 H 0.08 1.77 7.91 -2.39 -0.02 1.75 16 27 H 0.13 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -72.75 249.33 4.55 -68.20 By element: Atomic # 1 Polarization: 0.99 SS G_CDS: 1.10 Total: 2.10 kcal Atomic # 6 Polarization: -7.62 SS G_CDS: 3.48 Total: -4.14 kcal Atomic # 7 Polarization: -80.40 SS G_CDS: -2.01 Total: -82.41 kcal Atomic # 8 Polarization: -32.16 SS G_CDS: -0.05 Total: -32.21 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.46 kcal Total: -72.75 4.55 -68.20 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261077941.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.159 kcal (2) G-P(sol) polarization free energy of solvation -72.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds