Wall clock time and date at job start Mon Mar 30 2020 02:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 119.99350 * 179.97438 * 6 4 2 8 8 Si 1.86789 * 120.00458 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47356 * 89.99481 * 8 6 4 10 10 H 1.48501 * 109.47162 * 209.99853 * 8 6 4 11 11 H 1.48503 * 109.47180 * 329.99546 * 8 6 4 12 12 N 1.46497 * 109.47188 * 239.99601 * 2 1 3 13 13 C 1.46765 * 124.34837 * 119.99793 * 12 2 1 14 14 C 1.54481 * 105.47441 * 197.01995 * 13 12 2 15 15 C 1.54625 * 101.76529 * 334.58663 * 14 13 12 16 16 H 1.08997 * 110.48727 * 143.47692 * 15 14 13 17 17 C 1.53001 * 110.48556 * 265.98458 * 15 14 13 18 18 C 1.34424 * 124.35182 * 299.70482 * 12 2 1 19 19 O 1.21277 * 124.94031 * 359.56313 * 18 12 2 20 20 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 21 21 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 22 22 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 23 23 H 0.97005 * 119.99656 * 180.02562 * 7 6 4 24 24 H 1.08995 * 110.24984 * 316.02053 * 13 12 2 25 25 H 1.09002 * 110.24605 * 78.02223 * 13 12 2 26 26 H 1.09001 * 110.96948 * 92.70501 * 14 13 12 27 27 H 1.09004 * 110.97054 * 216.46863 * 14 13 12 28 28 H 1.09004 * 109.47286 * 60.00427 * 17 15 14 29 29 H 1.09002 * 109.47290 * 179.97438 * 17 15 14 30 30 H 1.08994 * 109.47472 * 300.00049 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 2.1372 -0.8596 3.5565 8 14 0.6248 1.2790 2.6541 9 1 -0.8028 0.8727 2.6997 10 1 0.9760 1.9951 3.9068 11 1 0.8471 2.1765 1.4920 12 7 2.0183 -0.6907 -1.1961 13 6 2.8655 -0.0713 -2.2221 14 6 2.7608 -0.9951 -3.4558 15 6 2.4038 -2.3514 -2.8047 16 1 1.7072 -2.9051 -3.4342 17 6 3.6688 -3.1750 -2.5551 18 6 1.7527 -1.9747 -1.4921 19 8 1.0860 -2.7217 -0.8078 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 1.9026 -0.5284 4.4375 24 1 2.4967 0.9252 -2.4647 25 1 3.8981 -0.0185 -1.8770 26 1 1.9675 -0.6631 -4.1255 27 1 3.7140 -1.0536 -3.9814 28 1 4.3340 -2.6263 -1.8883 29 1 3.3985 -4.1260 -2.0961 30 1 4.1752 -3.3594 -3.5025 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261077944.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:50 Heat of formation + Delta-G solvation = -32.643518 kcal Electronic energy + Delta-G solvation = -13115.989757 eV Core-core repulsion = 10911.391738 eV Total energy + Delta-G solvation = -2204.598019 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.81437 -35.59074 -34.64641 -32.10514 -30.15237 -27.90211 -25.15268 -24.82257 -21.96867 -20.69727 -18.25127 -16.65902 -16.03585 -15.34423 -14.72685 -14.37545 -13.53564 -13.20582 -12.84803 -12.64731 -12.43479 -12.17198 -12.11564 -11.82077 -11.36798 -11.17842 -10.67445 -10.63214 -10.57975 -10.16489 -9.57425 -9.35660 -8.66093 -8.53201 -7.66307 -6.05285 -4.04030 3.27172 3.32418 3.37348 3.48991 3.95269 4.38344 4.73688 4.83257 5.06554 5.24947 5.39407 5.62160 5.74120 5.81977 5.89718 6.05125 6.16475 6.18486 6.30681 6.37159 6.45253 6.61075 6.68029 7.20346 7.56303 7.61870 8.20568 8.53818 9.01313 9.15318 9.54677 11.08464 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.050354 B = 0.012192 C = 0.011336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.930376 B = 2296.030180 C = 2469.515933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.250 3.750 3 H 0.043 0.957 4 C -0.514 4.514 5 H 0.078 0.922 6 C 0.071 3.929 7 N -0.896 5.896 8 Si 0.886 3.114 9 H -0.277 1.277 10 H -0.295 1.295 11 H -0.268 1.268 12 N -0.598 5.598 13 C 0.102 3.898 14 C -0.129 4.129 15 C -0.131 4.131 16 H 0.094 0.906 17 C -0.132 4.132 18 C 0.517 3.483 19 O -0.521 6.521 20 H 0.028 0.972 21 H 0.048 0.952 22 H 0.068 0.932 23 H 0.264 0.736 24 H 0.069 0.931 25 H 0.065 0.935 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.722 2.415 -13.658 13.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.149 3.851 3 H 0.061 0.939 4 C -0.552 4.552 5 H 0.096 0.904 6 C -0.131 4.131 7 N -0.534 5.534 8 Si 0.717 3.283 9 H -0.204 1.204 10 H -0.223 1.223 11 H -0.193 1.193 12 N -0.332 5.332 13 C -0.022 4.022 14 C -0.167 4.167 15 C -0.152 4.152 16 H 0.113 0.887 17 C -0.189 4.189 18 C 0.302 3.698 19 O -0.397 6.397 20 H 0.048 0.952 21 H 0.066 0.934 22 H 0.087 0.913 23 H 0.074 0.926 24 H 0.087 0.913 25 H 0.084 0.916 26 H 0.094 0.906 27 H 0.102 0.898 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.341 2.073 -13.003 13.236 hybrid contribution -0.575 0.872 0.265 1.078 sum 0.766 2.945 -12.739 13.097 Atomic orbital electron populations 1.22489 0.98926 1.02372 0.98546 1.19106 0.90284 0.92810 0.82862 0.93934 1.21161 1.32059 1.13711 0.88263 0.90392 1.24890 0.95739 0.96781 0.95664 1.69887 1.45550 1.40105 0.97856 0.86894 0.80954 0.83489 0.76986 1.20416 1.22258 1.19328 1.48399 1.49907 1.11848 1.23002 1.21955 0.95644 0.96795 0.87802 1.22665 1.02504 0.94499 0.96991 1.21985 0.99249 0.97213 0.96804 0.88735 1.21585 0.95737 1.00003 1.01614 1.20469 0.80502 0.82163 0.86625 1.90679 1.39809 1.54025 1.55166 0.95249 0.93379 0.91266 0.92575 0.91260 0.91644 0.90604 0.89812 0.92070 0.91925 0.92131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.89 8.68 37.16 0.32 -3.57 16 2 C 0.25 6.13 2.45 -69.08 -0.17 5.96 16 3 H 0.04 1.01 7.13 -51.93 -0.37 0.64 16 4 C -0.51 -15.10 8.62 -34.44 -0.30 -15.40 16 5 H 0.08 2.58 7.92 -52.49 -0.42 2.17 16 6 C 0.07 2.11 5.45 -17.82 -0.10 2.02 16 7 N -0.90 -28.23 13.96 55.43 0.77 -27.45 16 8 Si 0.89 22.13 24.37 -169.99 -4.14 17.99 16 9 H -0.28 -6.84 6.87 56.52 0.39 -6.45 16 10 H -0.30 -7.30 7.11 56.52 0.40 -6.90 16 11 H -0.27 -6.23 6.53 56.52 0.37 -5.86 16 12 N -0.60 -12.63 2.82 -166.16 -0.47 -13.10 16 13 C 0.10 1.56 7.30 -3.12 -0.02 1.53 16 14 C -0.13 -1.55 6.71 -25.10 -0.17 -1.72 16 15 C -0.13 -1.99 3.53 -90.63 -0.32 -2.31 16 16 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 17 C -0.13 -1.83 9.17 37.16 0.34 -1.49 16 18 C 0.52 11.16 6.63 -10.86 -0.07 11.09 16 19 O -0.52 -13.74 15.99 5.56 0.09 -13.65 16 20 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 21 H 0.05 1.15 3.27 -51.93 -0.17 0.98 16 22 H 0.07 1.76 6.82 -51.93 -0.35 1.40 16 23 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 24 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.08 0.79 7.90 -51.93 -0.41 0.38 16 28 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 242.67 15.07 3.66 3.66 Total: -1.00 -34.14 242.67 -4.86 -39.00 By element: Atomic # 1 Polarization: 1.74 SS G_CDS: -4.28 Total: -2.55 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: -0.48 Total: -3.89 kcal Atomic # 7 Polarization: -40.86 SS G_CDS: 0.30 Total: -40.55 kcal Atomic # 8 Polarization: -13.74 SS G_CDS: 0.09 Total: -13.65 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.14 Total: 17.99 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -34.14 -4.86 -39.00 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261077944.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.355 kcal (2) G-P(sol) polarization free energy of solvation -34.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds