Wall clock time and date at job start Mon Mar 30 2020 02:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 119.99350 * 179.97438 * 6 4 2 8 8 Si 1.86789 * 120.00458 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47356 * 89.99481 * 8 6 4 10 10 H 1.48501 * 109.47162 * 209.99853 * 8 6 4 11 11 H 1.48503 * 109.47180 * 329.99546 * 8 6 4 12 12 N 1.46497 * 109.47188 * 239.99601 * 2 1 3 13 13 C 1.46765 * 124.34837 * 119.99793 * 12 2 1 14 14 C 1.54481 * 105.47441 * 197.01995 * 13 12 2 15 15 C 1.54625 * 101.76529 * 334.58663 * 14 13 12 16 16 H 1.08997 * 110.48727 * 143.47692 * 15 14 13 17 17 C 1.53001 * 110.48556 * 265.98458 * 15 14 13 18 18 C 1.34424 * 124.35182 * 299.70482 * 12 2 1 19 19 O 1.21277 * 124.94031 * 359.56313 * 18 12 2 20 20 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 21 21 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 22 22 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 23 23 H 0.97005 * 119.99656 * 180.02562 * 7 6 4 24 24 H 1.08995 * 110.24984 * 316.02053 * 13 12 2 25 25 H 1.09002 * 110.24605 * 78.02223 * 13 12 2 26 26 H 1.09001 * 110.96948 * 92.70501 * 14 13 12 27 27 H 1.09004 * 110.97054 * 216.46863 * 14 13 12 28 28 H 1.09004 * 109.47286 * 60.00427 * 17 15 14 29 29 H 1.09002 * 109.47290 * 179.97438 * 17 15 14 30 30 H 1.08994 * 109.47472 * 300.00049 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 2.1372 -0.8596 3.5565 8 14 0.6248 1.2790 2.6541 9 1 -0.8028 0.8727 2.6997 10 1 0.9760 1.9951 3.9068 11 1 0.8471 2.1765 1.4920 12 7 2.0183 -0.6907 -1.1961 13 6 2.8655 -0.0713 -2.2221 14 6 2.7608 -0.9951 -3.4558 15 6 2.4038 -2.3514 -2.8047 16 1 1.7072 -2.9051 -3.4342 17 6 3.6688 -3.1750 -2.5551 18 6 1.7527 -1.9747 -1.4921 19 8 1.0860 -2.7217 -0.8078 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 1.9026 -0.5284 4.4375 24 1 2.4967 0.9252 -2.4647 25 1 3.8981 -0.0185 -1.8770 26 1 1.9675 -0.6631 -4.1255 27 1 3.7140 -1.0536 -3.9814 28 1 4.3340 -2.6263 -1.8883 29 1 3.3985 -4.1260 -2.0961 30 1 4.1752 -3.3594 -3.5025 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261077944.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:50 Heat of formation + Delta-G solvation = -58.226734 kcal Electronic energy + Delta-G solvation = -13117.099129 eV Core-core repulsion = 10911.391738 eV Total energy + Delta-G solvation = -2205.707391 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.33286 -37.27147 -36.40961 -34.09958 -31.80640 -29.22250 -27.22748 -26.24465 -23.62167 -22.05257 -19.99003 -18.73079 -17.71681 -16.73869 -16.45923 -16.08190 -15.09595 -14.83196 -14.74644 -14.18758 -14.03829 -13.75648 -13.48778 -13.11856 -12.99365 -12.92335 -12.50890 -12.21463 -11.78219 -11.69858 -11.53540 -11.36409 -10.82141 -10.32814 -9.36448 -8.33888 -6.39201 1.28289 1.32508 1.44052 1.86105 2.27277 2.41252 2.99593 3.51467 3.68533 4.05751 4.25457 4.38792 4.49117 4.52541 4.54837 4.72552 4.77815 4.79255 4.89058 5.00060 5.16005 5.16711 5.35930 5.36828 5.48152 5.80757 6.29988 6.57760 6.66859 7.20611 7.53536 8.84616 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.050354 B = 0.012192 C = 0.011336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.930376 B = 2296.030180 C = 2469.515933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.247 3.753 3 H 0.064 0.936 4 C -0.521 4.521 5 H 0.016 0.984 6 C 0.005 3.995 7 N -0.951 5.951 8 Si 0.959 3.041 9 H -0.272 1.272 10 H -0.291 1.291 11 H -0.230 1.230 12 N -0.609 5.609 13 C 0.089 3.911 14 C -0.108 4.108 15 C -0.123 4.123 16 H 0.113 0.887 17 C -0.129 4.129 18 C 0.494 3.506 19 O -0.589 6.589 20 H 0.069 0.931 21 H 0.046 0.954 22 H 0.037 0.963 23 H 0.267 0.733 24 H 0.097 0.903 25 H 0.067 0.933 26 H 0.101 0.899 27 H 0.122 0.878 28 H 0.043 0.957 29 H 0.040 0.960 30 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.555 4.869 -16.723 17.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.145 3.855 3 H 0.081 0.919 4 C -0.560 4.560 5 H 0.034 0.966 6 C -0.191 4.191 7 N -0.591 5.591 8 Si 0.784 3.216 9 H -0.199 1.199 10 H -0.219 1.219 11 H -0.153 1.153 12 N -0.340 5.340 13 C -0.033 4.033 14 C -0.145 4.145 15 C -0.144 4.144 16 H 0.131 0.869 17 C -0.187 4.187 18 C 0.282 3.718 19 O -0.470 6.470 20 H 0.088 0.912 21 H 0.064 0.936 22 H 0.056 0.944 23 H 0.076 0.924 24 H 0.115 0.885 25 H 0.085 0.915 26 H 0.119 0.881 27 H 0.140 0.860 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 1.213 4.554 -16.135 16.809 hybrid contribution -0.432 0.003 1.224 1.298 sum 0.781 4.557 -14.911 15.611 Atomic orbital electron populations 1.22355 0.97943 1.00981 1.00335 1.18935 0.91078 0.93175 0.82332 0.91871 1.21388 1.31310 1.12040 0.91231 0.96588 1.25956 0.97363 1.00910 0.94920 1.70074 1.47687 1.42700 0.98687 0.85721 0.78387 0.79094 0.78399 1.19869 1.21858 1.15262 1.48572 1.50201 1.12253 1.23010 1.22391 0.94769 0.98631 0.87512 1.22728 1.05459 0.90643 0.95650 1.22025 0.99358 0.99728 0.93314 0.86934 1.21618 0.95175 0.98415 1.03470 1.21752 0.79685 0.81864 0.88471 1.90626 1.42786 1.55709 1.57836 0.91231 0.93577 0.94374 0.92392 0.88517 0.91477 0.88080 0.85952 0.93805 0.94126 0.87437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.21 8.68 71.98 0.62 -6.58 16 2 C 0.25 11.93 2.45 44.25 0.11 12.04 16 3 H 0.06 2.79 7.13 -2.39 -0.02 2.78 16 4 C -0.52 -31.91 8.62 25.60 0.22 -31.69 16 5 H 0.02 1.13 7.92 -2.91 -0.02 1.11 16 6 C 0.01 0.32 5.45 84.66 0.46 0.78 16 7 N -0.95 -62.69 13.96 21.45 0.30 -62.39 16 8 Si 0.96 45.35 24.37 68.60 1.67 47.03 16 9 H -0.27 -12.60 6.87 99.48 0.68 -11.92 16 10 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 11 H -0.23 -9.39 6.53 99.48 0.65 -8.74 16 12 N -0.61 -25.12 2.82 -798.20 -2.25 -27.37 16 13 C 0.09 2.39 7.30 86.83 0.63 3.03 16 14 C -0.11 -2.05 6.71 31.65 0.21 -1.83 16 15 C -0.12 -3.45 3.53 -10.80 -0.04 -3.49 16 16 H 0.11 2.79 8.14 -2.39 -0.02 2.77 16 17 C -0.13 -3.37 9.17 71.98 0.66 -2.71 16 18 C 0.49 21.54 6.63 87.90 0.58 22.12 16 19 O -0.59 -32.79 15.99 -3.02 -0.05 -32.84 16 20 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 21 H 0.05 2.09 3.27 -2.39 -0.01 2.08 16 22 H 0.04 1.95 6.82 -2.38 -0.02 1.93 16 23 H 0.27 16.31 8.31 -92.70 -0.77 15.54 16 24 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 25 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 26 H 0.10 1.50 8.14 -2.39 -0.02 1.49 16 27 H 0.12 1.49 7.90 -2.38 -0.02 1.47 16 28 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -81.74 242.67 4.17 -77.57 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: 1.03 Total: 6.34 kcal Atomic # 6 Polarization: -11.80 SS G_CDS: 3.47 Total: -8.33 kcal Atomic # 7 Polarization: -87.81 SS G_CDS: -1.95 Total: -89.76 kcal Atomic # 8 Polarization: -32.79 SS G_CDS: -0.05 Total: -32.84 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 1.67 Total: 47.03 kcal Total: -81.74 4.17 -77.57 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261077944.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.344 kcal (2) G-P(sol) polarization free energy of solvation -81.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds