Wall clock time and date at job start Mon Mar 30 2020 02:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47040 * 2 1 4 4 C 1.50700 * 109.47180 * 120.00471 * 2 1 3 5 5 H 1.08001 * 120.00017 * 119.99719 * 4 2 1 6 6 C 1.37881 * 119.99556 * 299.99437 * 4 2 1 7 7 N 1.31510 * 120.00032 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99730 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.47255 * 89.99971 * 8 6 4 10 10 H 1.48495 * 109.47192 * 210.00445 * 8 6 4 11 11 H 1.48507 * 109.47071 * 330.00206 * 8 6 4 12 12 N 1.46506 * 109.46656 * 240.00112 * 2 1 3 13 13 C 1.46763 * 124.34806 * 120.00439 * 12 2 1 14 14 C 1.54482 * 105.47085 * 197.01692 * 13 12 2 15 15 C 1.54627 * 101.76258 * 334.57759 * 14 13 12 16 16 H 1.09002 * 110.48898 * 266.12186 * 15 14 13 17 17 C 1.53003 * 110.48424 * 143.61143 * 15 14 13 18 18 C 1.34415 * 124.35240 * 299.69991 * 12 2 1 19 19 O 1.21288 * 124.94000 * 359.57121 * 18 12 2 20 20 H 1.09002 * 109.46792 * 299.99932 * 1 2 3 21 21 H 1.09002 * 109.47539 * 59.99857 * 1 2 3 22 22 H 1.09005 * 109.47120 * 180.02562 * 1 2 3 23 23 H 0.97006 * 119.99631 * 179.97438 * 7 6 4 24 24 H 1.08999 * 110.24140 * 316.01119 * 13 12 2 25 25 H 1.08993 * 110.25038 * 77.92305 * 13 12 2 26 26 H 1.08995 * 110.97376 * 92.70400 * 14 13 12 27 27 H 1.09005 * 110.96541 * 216.46206 * 14 13 12 28 28 H 1.09008 * 109.46957 * 59.99773 * 17 15 14 29 29 H 1.08993 * 109.47284 * 179.97438 * 17 15 14 30 30 H 1.09000 * 109.47357 * 300.00484 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6993 -0.2394 2.4827 7 7 0.9429 0.8296 2.6034 8 14 2.3225 -1.1196 4.0079 9 1 3.6306 -0.5442 4.4118 10 1 1.3445 -0.9492 5.1122 11 1 2.4880 -2.5655 3.7120 12 7 2.0182 -0.6906 -1.1963 13 6 2.8655 -0.0713 -2.2222 14 6 2.7606 -0.9950 -3.4560 15 6 2.4037 -2.3513 -2.8049 16 1 3.3051 -2.9371 -2.6249 17 6 1.4284 -3.1300 -3.6900 18 6 1.7526 -1.9746 -1.4923 19 8 1.0858 -2.7217 -0.8080 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 0.7083 1.1608 3.4844 24 1 2.4965 0.9253 -2.4647 25 1 3.8977 -0.0170 -1.8766 26 1 1.9674 -0.6629 -4.1257 27 1 3.7138 -1.0534 -3.9816 28 1 1.8868 -3.3133 -4.6619 29 1 1.1886 -4.0819 -3.2164 30 1 0.5154 -2.5495 -3.8227 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261077946.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:52 Heat of formation + Delta-G solvation = -42.658514 kcal Electronic energy + Delta-G solvation = -13032.623965 eV Core-core repulsion = 10827.591663 eV Total energy + Delta-G solvation = -2205.032302 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.64459 -35.43247 -34.48023 -32.15851 -29.65565 -27.53414 -25.11100 -24.63215 -21.73082 -20.66079 -18.15396 -16.61183 -15.97949 -15.14059 -14.33464 -14.11747 -13.46697 -13.26468 -12.93327 -12.55094 -12.26040 -11.70270 -11.64774 -11.39617 -10.98579 -10.81888 -10.72290 -10.51316 -10.48352 -10.23635 -10.02436 -9.22853 -8.62221 -8.27029 -7.51769 -6.00638 -4.04800 3.33270 3.39557 3.46754 3.60074 4.12076 4.50125 4.82105 4.92908 5.08227 5.31202 5.49258 5.65682 5.79411 5.82889 6.02182 6.11318 6.16885 6.30813 6.44831 6.77392 6.98495 7.14511 7.29429 7.77031 7.84871 8.12325 8.16525 8.53044 8.94589 9.27640 9.61692 11.05108 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.049785 B = 0.011134 C = 0.010556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.288997 B = 2514.141752 C = 2651.767586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.278 3.722 3 H 0.043 0.957 4 C -0.508 4.508 5 H 0.058 0.942 6 C 0.061 3.939 7 N -0.896 5.896 8 Si 0.899 3.101 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.273 1.273 12 N -0.602 5.602 13 C 0.101 3.899 14 C -0.128 4.128 15 C -0.134 4.134 16 H 0.097 0.903 17 C -0.128 4.128 18 C 0.514 3.486 19 O -0.527 6.527 20 H 0.092 0.908 21 H 0.006 0.994 22 H 0.044 0.956 23 H 0.262 0.738 24 H 0.069 0.931 25 H 0.062 0.938 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.582 -1.516 -11.100 11.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.178 3.822 3 H 0.061 0.939 4 C -0.546 4.546 5 H 0.077 0.923 6 C -0.140 4.140 7 N -0.536 5.536 8 Si 0.727 3.273 9 H -0.208 1.208 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.335 5.335 13 C -0.023 4.023 14 C -0.166 4.166 15 C -0.156 4.156 16 H 0.115 0.885 17 C -0.186 4.186 18 C 0.299 3.701 19 O -0.404 6.404 20 H 0.110 0.890 21 H 0.025 0.975 22 H 0.063 0.937 23 H 0.071 0.929 24 H 0.087 0.913 25 H 0.081 0.919 26 H 0.095 0.905 27 H 0.098 0.902 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.110 -1.727 -10.501 11.087 hybrid contribution 0.420 -0.300 0.856 0.999 sum 3.530 -2.026 -9.645 10.469 Atomic orbital electron populations 1.22102 0.97925 1.00818 1.00135 1.18771 0.91303 0.92122 0.79967 0.93902 1.21318 1.30975 1.12276 0.90066 0.92349 1.24865 0.95111 0.95097 0.98956 1.69869 1.36959 1.23114 1.23617 0.86464 0.78337 0.80258 0.82227 1.20760 1.21135 1.19821 1.48809 1.49416 1.11769 1.23518 1.21934 0.95555 0.96942 0.87908 1.22669 1.02294 0.94424 0.97179 1.21997 1.00415 0.97319 0.95823 0.88490 1.21554 0.98417 1.00423 0.98230 1.20437 0.80750 0.82476 0.86411 1.90648 1.40126 1.54301 1.55303 0.88967 0.97473 0.93667 0.92854 0.91285 0.91935 0.90535 0.90152 0.92454 0.91912 0.92610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.94 8.98 37.16 0.33 -3.60 16 2 C 0.28 7.23 2.86 -69.08 -0.20 7.04 16 3 H 0.04 1.14 8.07 -51.93 -0.42 0.73 16 4 C -0.51 -14.68 8.04 -34.44 -0.28 -14.96 16 5 H 0.06 1.76 7.68 -52.49 -0.40 1.36 16 6 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 7 N -0.90 -25.94 11.32 55.43 0.63 -25.31 16 8 Si 0.90 22.39 29.54 -169.99 -5.02 17.37 16 9 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 10 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 11 H -0.27 -6.93 7.11 56.52 0.40 -6.53 16 12 N -0.60 -13.29 2.82 -166.16 -0.47 -13.76 16 13 C 0.10 1.64 7.30 -3.12 -0.02 1.61 16 14 C -0.13 -1.64 6.70 -25.10 -0.17 -1.81 16 15 C -0.13 -2.10 3.51 -90.63 -0.32 -2.42 16 16 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 17 C -0.13 -1.76 9.10 37.16 0.34 -1.42 16 18 C 0.51 11.37 6.75 -10.86 -0.07 11.30 16 19 O -0.53 -13.97 15.84 5.55 0.09 -13.89 16 20 H 0.09 2.56 6.07 -51.93 -0.32 2.25 16 21 H 0.01 0.15 8.14 -51.93 -0.42 -0.28 16 22 H 0.04 1.24 6.82 -51.93 -0.35 0.89 16 23 H 0.26 7.20 8.31 -40.82 -0.34 6.87 16 24 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 25 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.08 0.90 7.91 -51.93 -0.41 0.49 16 27 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.06 0.61 8.14 -51.92 -0.42 0.18 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 249.38 15.07 3.76 3.76 Total: -1.00 -32.22 249.38 -5.92 -38.14 By element: Atomic # 1 Polarization: 0.73 SS G_CDS: -4.42 Total: -3.69 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: -0.48 Total: -2.63 kcal Atomic # 7 Polarization: -39.23 SS G_CDS: 0.16 Total: -39.07 kcal Atomic # 8 Polarization: -13.97 SS G_CDS: 0.09 Total: -13.89 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -32.22 -5.92 -38.14 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261077946.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.519 kcal (2) G-P(sol) polarization free energy of solvation -32.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds