Wall clock time and date at job start Mon Mar 30 2020 02:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47040 * 2 1 4 4 C 1.50700 * 109.47180 * 120.00471 * 2 1 3 5 5 H 1.08001 * 120.00017 * 119.99719 * 4 2 1 6 6 C 1.37881 * 119.99556 * 299.99437 * 4 2 1 7 7 N 1.31510 * 120.00032 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99730 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.47255 * 89.99971 * 8 6 4 10 10 H 1.48495 * 109.47192 * 210.00445 * 8 6 4 11 11 H 1.48507 * 109.47071 * 330.00206 * 8 6 4 12 12 N 1.46506 * 109.46656 * 240.00112 * 2 1 3 13 13 C 1.46763 * 124.34806 * 120.00439 * 12 2 1 14 14 C 1.54482 * 105.47085 * 197.01692 * 13 12 2 15 15 C 1.54627 * 101.76258 * 334.57759 * 14 13 12 16 16 H 1.09002 * 110.48898 * 266.12186 * 15 14 13 17 17 C 1.53003 * 110.48424 * 143.61143 * 15 14 13 18 18 C 1.34415 * 124.35240 * 299.69991 * 12 2 1 19 19 O 1.21288 * 124.94000 * 359.57121 * 18 12 2 20 20 H 1.09002 * 109.46792 * 299.99932 * 1 2 3 21 21 H 1.09002 * 109.47539 * 59.99857 * 1 2 3 22 22 H 1.09005 * 109.47120 * 180.02562 * 1 2 3 23 23 H 0.97006 * 119.99631 * 179.97438 * 7 6 4 24 24 H 1.08999 * 110.24140 * 316.01119 * 13 12 2 25 25 H 1.08993 * 110.25038 * 77.92305 * 13 12 2 26 26 H 1.08995 * 110.97376 * 92.70400 * 14 13 12 27 27 H 1.09005 * 110.96541 * 216.46206 * 14 13 12 28 28 H 1.09008 * 109.46957 * 59.99773 * 17 15 14 29 29 H 1.08993 * 109.47284 * 179.97438 * 17 15 14 30 30 H 1.09000 * 109.47357 * 300.00484 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6993 -0.2394 2.4827 7 7 0.9429 0.8296 2.6034 8 14 2.3225 -1.1196 4.0079 9 1 3.6306 -0.5442 4.4118 10 1 1.3445 -0.9492 5.1122 11 1 2.4880 -2.5655 3.7120 12 7 2.0182 -0.6906 -1.1963 13 6 2.8655 -0.0713 -2.2222 14 6 2.7606 -0.9950 -3.4560 15 6 2.4037 -2.3513 -2.8049 16 1 3.3051 -2.9371 -2.6249 17 6 1.4284 -3.1300 -3.6900 18 6 1.7526 -1.9746 -1.4923 19 8 1.0858 -2.7217 -0.8080 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 0.7083 1.1608 3.4844 24 1 2.4965 0.9253 -2.4647 25 1 3.8977 -0.0170 -1.8766 26 1 1.9674 -0.6629 -4.1257 27 1 3.7138 -1.0534 -3.9816 28 1 1.8868 -3.3133 -4.6619 29 1 1.1886 -4.0819 -3.2164 30 1 0.5154 -2.5495 -3.8227 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261077946.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:52 Heat of formation + Delta-G solvation = -64.087532 kcal Electronic energy + Delta-G solvation = -13033.553197 eV Core-core repulsion = 10827.591663 eV Total energy + Delta-G solvation = -2205.961534 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.21898 -37.15391 -36.31301 -33.97289 -31.36876 -29.02848 -27.32383 -26.00699 -23.41035 -22.11131 -19.87637 -18.55921 -17.56007 -17.04008 -16.10153 -15.83895 -14.85748 -14.78726 -14.59817 -14.30373 -13.73446 -13.38905 -13.14954 -12.91477 -12.83854 -12.69660 -12.43400 -12.40023 -12.12241 -11.81517 -11.68718 -11.28542 -10.65580 -10.18772 -9.30222 -8.19033 -6.31081 1.33378 1.36448 1.47136 1.93142 2.33857 2.57845 3.07926 3.55741 3.72964 4.00804 4.34437 4.50229 4.62528 4.67768 4.78033 4.87867 4.89791 4.97624 5.06915 5.15501 5.23101 5.30934 5.37775 5.57766 5.77362 6.09013 6.13511 6.67198 6.79877 7.31978 7.61975 8.84842 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.049785 B = 0.011134 C = 0.010556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.288997 B = 2514.141752 C = 2651.767586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.278 3.722 3 H 0.034 0.966 4 C -0.528 4.528 5 H 0.035 0.965 6 C 0.017 3.983 7 N -0.914 5.914 8 Si 0.957 3.043 9 H -0.265 1.265 10 H -0.276 1.276 11 H -0.285 1.285 12 N -0.614 5.614 13 C 0.089 3.911 14 C -0.107 4.107 15 C -0.125 4.125 16 H 0.112 0.888 17 C -0.124 4.124 18 C 0.492 3.508 19 O -0.587 6.587 20 H 0.071 0.929 21 H 0.030 0.970 22 H 0.019 0.981 23 H 0.266 0.734 24 H 0.083 0.917 25 H 0.071 0.929 26 H 0.093 0.907 27 H 0.124 0.876 28 H 0.100 0.900 29 H 0.045 0.955 30 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.884 -1.351 -12.828 13.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.176 3.824 3 H 0.052 0.948 4 C -0.567 4.567 5 H 0.053 0.947 6 C -0.183 4.183 7 N -0.553 5.553 8 Si 0.783 3.217 9 H -0.190 1.190 10 H -0.201 1.201 11 H -0.210 1.210 12 N -0.346 5.346 13 C -0.034 4.034 14 C -0.144 4.144 15 C -0.146 4.146 16 H 0.130 0.870 17 C -0.182 4.182 18 C 0.280 3.720 19 O -0.468 6.468 20 H 0.090 0.910 21 H 0.049 0.951 22 H 0.038 0.962 23 H 0.075 0.925 24 H 0.101 0.899 25 H 0.089 0.911 26 H 0.112 0.888 27 H 0.142 0.858 28 H 0.118 0.882 29 H 0.064 0.936 30 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 4.441 -1.530 -12.268 13.136 hybrid contribution 0.011 -0.326 1.384 1.422 sum 4.452 -1.856 -10.884 11.905 Atomic orbital electron populations 1.21887 0.98333 0.99034 1.00207 1.18456 0.91031 0.91680 0.81206 0.94811 1.21463 1.31373 1.11886 0.91953 0.94653 1.25594 0.95280 0.95827 1.01551 1.69948 1.37188 1.23753 1.24441 0.85572 0.78699 0.78396 0.79057 1.19013 1.20103 1.21015 1.48879 1.49892 1.12361 1.23450 1.22326 0.94915 0.98245 0.87886 1.22721 1.05213 0.90862 0.95634 1.22033 1.00611 0.99554 0.92406 0.87009 1.21568 0.97995 0.99039 0.99594 1.21697 0.80044 0.81946 0.88277 1.90596 1.42756 1.55771 1.57709 0.91047 0.95112 0.96172 0.92470 0.89907 0.91114 0.88831 0.85790 0.88172 0.93616 0.93375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.25 8.98 71.98 0.65 -6.61 16 2 C 0.28 14.74 2.86 44.24 0.13 14.86 16 3 H 0.03 1.84 8.07 -2.39 -0.02 1.82 16 4 C -0.53 -31.37 8.04 25.60 0.21 -31.17 16 5 H 0.04 2.21 7.68 -2.91 -0.02 2.18 16 6 C 0.02 0.97 5.30 84.66 0.45 1.42 16 7 N -0.91 -53.50 11.32 21.45 0.24 -53.26 16 8 Si 0.96 46.46 29.54 68.60 2.03 48.48 16 9 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 10 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 11 H -0.28 -14.23 7.11 99.48 0.71 -13.52 16 12 N -0.61 -26.95 2.82 -798.21 -2.25 -29.20 16 13 C 0.09 2.65 7.30 86.83 0.63 3.28 16 14 C -0.11 -2.26 6.70 31.65 0.21 -2.04 16 15 C -0.12 -3.59 3.51 -10.80 -0.04 -3.62 16 16 H 0.11 2.92 8.14 -2.39 -0.02 2.90 16 17 C -0.12 -3.06 9.10 71.98 0.65 -2.40 16 18 C 0.49 21.82 6.75 87.90 0.59 22.41 16 19 O -0.59 -32.30 15.84 -3.05 -0.05 -32.35 16 20 H 0.07 4.07 6.07 -2.39 -0.01 4.06 16 21 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 22 H 0.02 1.12 6.82 -2.38 -0.02 1.10 16 23 H 0.27 14.69 8.31 -92.70 -0.77 13.92 16 24 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 25 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 26 H 0.09 1.72 7.91 -2.39 -0.02 1.70 16 27 H 0.12 1.66 8.14 -2.38 -0.02 1.64 16 28 H 0.10 1.63 8.14 -2.38 -0.02 1.61 16 29 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -72.84 249.38 4.56 -68.29 By element: Atomic # 1 Polarization: 0.81 SS G_CDS: 1.10 Total: 1.91 kcal Atomic # 6 Polarization: -7.36 SS G_CDS: 3.48 Total: -3.87 kcal Atomic # 7 Polarization: -80.45 SS G_CDS: -2.01 Total: -82.46 kcal Atomic # 8 Polarization: -32.30 SS G_CDS: -0.05 Total: -32.35 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 2.03 Total: 48.48 kcal Total: -72.84 4.56 -68.29 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261077946.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.201 kcal (2) G-P(sol) polarization free energy of solvation -72.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds