Wall clock time and date at job start Mon Mar 30 2020 02:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09011 * 109.67176 * 2 1 4 4 C 1.53341 * 109.70580 * 239.48427 * 2 1 3 5 5 C 1.53099 * 108.53135 * 172.55907 * 4 2 1 6 6 N 1.45755 * 110.38714 * 51.10905 * 5 4 2 7 7 C 1.46503 * 117.94297 * 160.74728 * 6 5 4 8 8 C 1.50699 * 109.46825 * 269.73799 * 7 6 5 9 9 H 1.07999 * 120.00803 * 0.02562 * 8 7 6 10 10 C 1.37881 * 119.99889 * 180.02562 * 8 7 6 11 11 N 1.31520 * 120.00186 * 180.02562 * 10 8 7 12 12 Si 1.86798 * 120.00030 * 0.02562 * 10 8 7 13 13 H 1.48506 * 109.47297 * 89.99863 * 12 10 8 14 14 H 1.48503 * 109.47261 * 330.00044 * 12 10 8 15 15 H 1.48500 * 109.47454 * 210.00037 * 12 10 8 16 16 C 1.33349 * 124.10693 * 340.46972 * 6 5 4 17 17 O 1.21286 * 118.24537 * 182.47750 * 16 6 5 18 18 C 1.50172 * 123.50984 * 2.49976 * 16 6 5 19 19 H 1.09001 * 109.47002 * 299.50049 * 1 2 3 20 20 H 1.08996 * 109.47295 * 59.50550 * 1 2 3 21 21 H 1.09004 * 109.46583 * 179.50275 * 1 2 3 22 22 H 1.08998 * 109.60195 * 292.47359 * 4 2 1 23 23 H 1.08994 * 109.60680 * 52.79628 * 4 2 1 24 24 H 1.09006 * 109.49457 * 290.73903 * 5 4 2 25 25 H 1.09003 * 109.21071 * 171.30357 * 5 4 2 26 26 H 1.09004 * 109.46958 * 149.74211 * 7 6 5 27 27 H 1.08997 * 109.47731 * 29.73887 * 7 6 5 28 28 H 0.96998 * 120.00124 * 180.02562 * 11 10 8 29 29 H 1.09001 * 109.40096 * 102.54312 * 18 16 6 30 30 H 1.08999 * 109.40134 * 222.28967 * 18 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8970 1.0265 0.0000 4 6 2.0471 -0.7330 -1.2437 5 6 3.5662 -0.5572 -1.3156 6 7 4.1800 -0.9183 -0.0439 7 6 5.6116 -1.2294 -0.0362 8 6 5.8062 -2.7049 -0.2727 9 1 4.9493 -3.3467 -0.4149 10 6 7.0783 -3.2356 -0.3076 11 7 7.2482 -4.5233 -0.5144 12 14 8.5604 -2.1257 -0.0609 13 1 8.8953 -2.0609 1.3844 14 1 8.2458 -0.7621 -0.5577 15 1 9.7184 -2.6717 -0.8133 16 6 3.5212 -0.9780 1.1140 17 8 4.1475 -1.2462 2.1175 18 6 2.0454 -0.7314 1.2420 19 1 -0.3633 0.5061 0.8944 20 1 -0.3634 0.5215 -0.8855 21 1 -0.3633 -1.0277 -0.0089 22 1 1.8008 -1.7924 -1.1725 23 1 1.5859 -0.3096 -2.1359 24 1 3.8016 0.4816 -1.5472 25 1 3.9645 -1.1977 -2.1026 26 1 6.0374 -0.9569 0.9294 27 1 6.1101 -0.6661 -0.8251 28 1 8.1431 -4.8967 -0.5386 29 1 1.5264 -1.6847 1.3421 30 1 1.8554 -0.1224 2.1258 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261088542.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:06 Heat of formation + Delta-G solvation = -48.897768 kcal Electronic energy + Delta-G solvation = -12838.950420 eV Core-core repulsion = 10633.647564 eV Total energy + Delta-G solvation = -2205.302857 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.73519 -36.21931 -34.53345 -32.37092 -29.51760 -28.67304 -26.66898 -23.35894 -22.30347 -20.59685 -18.10698 -16.88482 -15.90094 -15.65101 -14.94059 -14.37155 -13.95762 -13.76258 -12.94777 -12.83090 -12.43594 -12.32202 -11.92704 -11.64138 -11.27682 -11.04581 -10.75050 -10.60941 -10.47709 -10.41401 -10.05910 -9.50024 -8.82196 -8.54944 -7.66696 -6.05686 -4.03868 3.31900 3.37875 3.39941 3.47438 3.94841 4.42944 4.81927 4.84095 4.91328 5.16166 5.29197 5.51481 5.59427 5.68020 5.74936 5.80152 5.99390 6.04466 6.10509 6.16124 6.24210 6.44302 6.75717 7.04859 7.34909 7.65367 8.41644 8.51837 8.96629 9.08068 9.55021 11.07816 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.058022 B = 0.009849 C = 0.009519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.455596 B = 2842.284152 C = 2940.768428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.096 4.096 3 H 0.075 0.925 4 C -0.130 4.130 5 C 0.117 3.883 6 N -0.586 5.586 7 C 0.207 3.793 8 C -0.526 4.526 9 H 0.073 0.927 10 C 0.071 3.929 11 N -0.899 5.899 12 Si 0.878 3.122 13 H -0.274 1.274 14 H -0.266 1.266 15 H -0.285 1.285 16 C 0.507 3.493 17 O -0.557 6.557 18 C -0.128 4.128 19 H 0.055 0.945 20 H 0.055 0.945 21 H 0.056 0.944 22 H 0.072 0.928 23 H 0.077 0.923 24 H 0.054 0.946 25 H 0.080 0.920 26 H 0.040 0.960 27 H 0.028 0.972 28 H 0.264 0.736 29 H 0.093 0.907 30 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.169 10.147 -2.436 15.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.115 4.115 3 H 0.093 0.907 4 C -0.168 4.168 5 C -0.007 4.007 6 N -0.317 5.317 7 C 0.086 3.914 8 C -0.564 4.564 9 H 0.091 0.909 10 C -0.131 4.131 11 N -0.538 5.538 12 Si 0.705 3.295 13 H -0.199 1.199 14 H -0.191 1.191 15 H -0.211 1.211 16 C 0.294 3.706 17 O -0.437 6.437 18 C -0.168 4.168 19 H 0.074 0.926 20 H 0.074 0.926 21 H 0.075 0.925 22 H 0.091 0.909 23 H 0.095 0.905 24 H 0.072 0.928 25 H 0.098 0.902 26 H 0.058 0.942 27 H 0.046 0.954 28 H 0.074 0.926 29 H 0.111 0.889 30 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -10.712 9.872 -1.949 14.697 hybrid contribution 0.823 0.325 0.008 0.885 sum -9.888 10.197 -1.941 14.336 Atomic orbital electron populations 1.21813 0.94751 1.01987 1.01599 1.21259 0.95835 0.99718 0.94650 0.90704 1.21979 0.95218 1.01619 0.97974 1.21292 0.92437 0.99782 0.87188 1.47260 1.11711 1.66250 1.06475 1.19710 0.76810 0.97148 0.97739 1.21308 0.94192 0.91562 1.49360 0.90860 1.24864 0.98773 0.94962 0.94497 1.69902 1.22506 1.11478 1.49910 0.86825 0.82595 0.81188 0.78926 1.19910 1.19092 1.21103 1.19850 0.89409 0.77867 0.83434 1.90682 1.68063 1.49308 1.35599 1.21718 0.93393 1.02524 0.99194 0.92639 0.92573 0.92484 0.90904 0.90460 0.92767 0.90185 0.94173 0.95402 0.92606 0.88907 0.89140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 9.20 37.16 0.34 -1.01 16 2 C -0.10 -1.16 2.79 -90.40 -0.25 -1.41 16 3 H 0.07 0.88 8.13 -51.92 -0.42 0.45 16 4 C -0.13 -1.66 5.33 -26.50 -0.14 -1.81 16 5 C 0.12 1.90 6.32 -4.39 -0.03 1.87 16 6 N -0.59 -12.58 2.79 -176.22 -0.49 -13.07 16 7 C 0.21 5.26 4.04 -5.19 -0.02 5.24 16 8 C -0.53 -15.53 9.93 -34.44 -0.34 -15.87 16 9 H 0.07 2.36 8.06 -52.49 -0.42 1.94 16 10 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 11 N -0.90 -28.23 13.96 55.43 0.77 -27.46 16 12 Si 0.88 22.10 27.47 -169.99 -4.67 17.43 16 13 H -0.27 -6.94 7.11 56.52 0.40 -6.54 16 14 H -0.27 -6.31 6.54 56.52 0.37 -5.94 16 15 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 16 C 0.51 10.91 7.45 -11.87 -0.09 10.82 16 17 O -0.56 -14.66 16.18 5.55 0.09 -14.57 16 18 C -0.13 -1.96 5.35 -28.10 -0.15 -2.11 16 19 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 20 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 21 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 22 H 0.07 1.00 8.12 -51.93 -0.42 0.58 16 23 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 24 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.08 1.37 8.10 -51.93 -0.42 0.95 16 26 H 0.04 1.10 6.56 -51.93 -0.34 0.76 16 27 H 0.03 0.67 7.07 -51.93 -0.37 0.30 16 28 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 29 H 0.09 1.36 8.10 -51.93 -0.42 0.94 16 30 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 248.35 15.07 3.74 3.74 Total: -1.00 -34.36 248.35 -5.85 -40.22 By element: Atomic # 1 Polarization: 0.49 SS G_CDS: -4.52 Total: -4.03 kcal Atomic # 6 Polarization: -1.47 SS G_CDS: -0.78 Total: -2.25 kcal Atomic # 7 Polarization: -40.81 SS G_CDS: 0.28 Total: -40.53 kcal Atomic # 8 Polarization: -14.66 SS G_CDS: 0.09 Total: -14.57 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.67 Total: 17.43 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -34.36 -5.85 -40.22 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261088542.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.683 kcal (2) G-P(sol) polarization free energy of solvation -34.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds