Wall clock time and date at job start Mon Mar 30 2020 02:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09011 * 109.67176 * 2 1 4 4 C 1.53341 * 109.70580 * 239.48427 * 2 1 3 5 5 C 1.53099 * 108.53135 * 172.55907 * 4 2 1 6 6 N 1.45755 * 110.38714 * 51.10905 * 5 4 2 7 7 C 1.46503 * 117.94297 * 160.74728 * 6 5 4 8 8 C 1.50699 * 109.46825 * 269.73799 * 7 6 5 9 9 H 1.07999 * 120.00803 * 0.02562 * 8 7 6 10 10 C 1.37881 * 119.99889 * 180.02562 * 8 7 6 11 11 N 1.31520 * 120.00186 * 180.02562 * 10 8 7 12 12 Si 1.86798 * 120.00030 * 0.02562 * 10 8 7 13 13 H 1.48506 * 109.47297 * 89.99863 * 12 10 8 14 14 H 1.48503 * 109.47261 * 330.00044 * 12 10 8 15 15 H 1.48500 * 109.47454 * 210.00037 * 12 10 8 16 16 C 1.33349 * 124.10693 * 340.46972 * 6 5 4 17 17 O 1.21286 * 118.24537 * 182.47750 * 16 6 5 18 18 C 1.50172 * 123.50984 * 2.49976 * 16 6 5 19 19 H 1.09001 * 109.47002 * 299.50049 * 1 2 3 20 20 H 1.08996 * 109.47295 * 59.50550 * 1 2 3 21 21 H 1.09004 * 109.46583 * 179.50275 * 1 2 3 22 22 H 1.08998 * 109.60195 * 292.47359 * 4 2 1 23 23 H 1.08994 * 109.60680 * 52.79628 * 4 2 1 24 24 H 1.09006 * 109.49457 * 290.73903 * 5 4 2 25 25 H 1.09003 * 109.21071 * 171.30357 * 5 4 2 26 26 H 1.09004 * 109.46958 * 149.74211 * 7 6 5 27 27 H 1.08997 * 109.47731 * 29.73887 * 7 6 5 28 28 H 0.96998 * 120.00124 * 180.02562 * 11 10 8 29 29 H 1.09001 * 109.40096 * 102.54312 * 18 16 6 30 30 H 1.08999 * 109.40134 * 222.28967 * 18 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8970 1.0265 0.0000 4 6 2.0471 -0.7330 -1.2437 5 6 3.5662 -0.5572 -1.3156 6 7 4.1800 -0.9183 -0.0439 7 6 5.6116 -1.2294 -0.0362 8 6 5.8062 -2.7049 -0.2727 9 1 4.9493 -3.3467 -0.4149 10 6 7.0783 -3.2356 -0.3076 11 7 7.2482 -4.5233 -0.5144 12 14 8.5604 -2.1257 -0.0609 13 1 8.8953 -2.0609 1.3844 14 1 8.2458 -0.7621 -0.5577 15 1 9.7184 -2.6717 -0.8133 16 6 3.5212 -0.9780 1.1140 17 8 4.1475 -1.2462 2.1175 18 6 2.0454 -0.7314 1.2420 19 1 -0.3633 0.5061 0.8944 20 1 -0.3634 0.5215 -0.8855 21 1 -0.3633 -1.0277 -0.0089 22 1 1.8008 -1.7924 -1.1725 23 1 1.5859 -0.3096 -2.1359 24 1 3.8016 0.4816 -1.5472 25 1 3.9645 -1.1977 -2.1026 26 1 6.0374 -0.9569 0.9294 27 1 6.1101 -0.6661 -0.8251 28 1 8.1431 -4.8967 -0.5386 29 1 1.5264 -1.6847 1.3421 30 1 1.8554 -0.1224 2.1258 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261088542.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:06 Heat of formation + Delta-G solvation = -73.175643 kcal Electronic energy + Delta-G solvation = -12840.003188 eV Core-core repulsion = 10633.647564 eV Total energy + Delta-G solvation = -2206.355624 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.30524 -37.65891 -36.19124 -34.49129 -30.99913 -30.21069 -28.17032 -24.63329 -24.26505 -21.82130 -19.57729 -19.10847 -17.45489 -17.37435 -16.52873 -15.98246 -15.33724 -15.19179 -14.77473 -14.17606 -14.06710 -13.69132 -13.30754 -12.96930 -12.88235 -12.54906 -12.51549 -12.01850 -11.98582 -11.77790 -11.56136 -11.46024 -10.85879 -10.50132 -9.45170 -8.36821 -6.42011 1.30301 1.35102 1.43662 1.80176 2.29087 2.36528 2.97434 3.72183 3.82076 3.84113 3.95566 4.47668 4.53691 4.64382 4.70921 4.77318 4.85434 4.90507 4.97411 5.02479 5.11661 5.20255 5.37048 5.43925 5.51725 5.57349 6.20119 6.58326 6.78495 7.18985 7.41960 8.80305 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.058022 B = 0.009849 C = 0.009519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.455596 B = 2842.284152 C = 2940.768428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.087 4.087 3 H 0.087 0.913 4 C -0.124 4.124 5 C 0.106 3.894 6 N -0.592 5.592 7 C 0.214 3.786 8 C -0.536 4.536 9 H 0.026 0.974 10 C 0.010 3.990 11 N -0.945 5.945 12 Si 0.951 3.049 13 H -0.277 1.277 14 H -0.238 1.238 15 H -0.271 1.271 16 C 0.493 3.507 17 O -0.618 6.618 18 C -0.119 4.119 19 H 0.065 0.935 20 H 0.076 0.924 21 H 0.055 0.945 22 H 0.057 0.943 23 H 0.117 0.883 24 H 0.085 0.915 25 H 0.065 0.935 26 H 0.020 0.980 27 H 0.050 0.950 28 H 0.269 0.731 29 H 0.098 0.902 30 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.128 12.635 -3.348 17.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.106 4.106 3 H 0.105 0.895 4 C -0.161 4.161 5 C -0.016 4.016 6 N -0.322 5.322 7 C 0.091 3.909 8 C -0.575 4.575 9 H 0.044 0.956 10 C -0.188 4.188 11 N -0.586 5.586 12 Si 0.773 3.227 13 H -0.203 1.203 14 H -0.161 1.161 15 H -0.196 1.196 16 C 0.283 3.717 17 O -0.502 6.502 18 C -0.159 4.159 19 H 0.084 0.916 20 H 0.095 0.905 21 H 0.074 0.926 22 H 0.076 0.924 23 H 0.135 0.865 24 H 0.103 0.897 25 H 0.083 0.917 26 H 0.038 0.962 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.116 0.884 30 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -11.720 12.382 -2.909 17.295 hybrid contribution 1.065 -0.530 0.276 1.221 sum -10.655 11.852 -2.633 16.153 Atomic orbital electron populations 1.21765 0.92084 1.02479 1.03185 1.21260 0.97828 0.99448 0.92060 0.89499 1.22001 0.92557 1.01287 1.00276 1.21666 0.94749 1.01001 0.84203 1.47433 1.10463 1.65665 1.08600 1.19394 0.79954 0.94471 0.97066 1.21516 0.93031 0.93464 1.49478 0.95558 1.25885 1.02426 0.96640 0.93869 1.70050 1.23706 1.13715 1.51083 0.85676 0.78133 0.80202 0.78694 1.20275 1.16147 1.19631 1.21057 0.91853 0.76375 0.82445 1.90639 1.69915 1.52019 1.37617 1.21747 0.88487 1.03680 1.01976 0.91600 0.90501 0.92593 0.92441 0.86509 0.89701 0.91671 0.96211 0.93228 0.92181 0.88416 0.87568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.20 71.98 0.66 -1.33 16 2 C -0.09 -1.80 2.79 -10.65 -0.03 -1.83 16 3 H 0.09 1.65 8.13 -2.38 -0.02 1.63 16 4 C -0.12 -2.80 5.33 30.74 0.16 -2.64 16 5 C 0.11 3.25 6.32 86.55 0.55 3.80 16 6 N -0.59 -25.36 2.79 -830.62 -2.32 -27.68 16 7 C 0.21 10.94 4.04 85.63 0.35 11.29 16 8 C -0.54 -32.80 9.93 25.60 0.25 -32.54 16 9 H 0.03 1.79 8.06 -2.91 -0.02 1.77 16 10 C 0.01 0.59 5.47 84.65 0.46 1.05 16 11 N -0.95 -61.09 13.96 21.45 0.30 -60.79 16 12 Si 0.95 45.72 27.47 68.60 1.88 47.60 16 13 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 14 H -0.24 -10.30 6.54 99.48 0.65 -9.65 16 15 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 16 C 0.49 21.34 7.45 87.71 0.65 21.99 16 17 O -0.62 -33.58 16.18 -3.05 -0.05 -33.63 16 18 C -0.12 -3.46 5.35 29.71 0.16 -3.30 16 19 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 20 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 21 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 22 H 0.06 1.49 8.12 -2.39 -0.02 1.47 16 23 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 24 H 0.08 2.12 8.14 -2.38 -0.02 2.10 16 25 H 0.06 2.19 8.10 -2.39 -0.02 2.17 16 26 H 0.02 1.09 6.56 -2.39 -0.02 1.08 16 27 H 0.05 2.31 7.07 -2.39 -0.02 2.29 16 28 H 0.27 16.09 8.31 -92.71 -0.77 15.32 16 29 H 0.10 2.75 8.10 -2.39 -0.02 2.73 16 30 H 0.11 2.75 8.14 -2.39 -0.02 2.73 16 Total: -1.00 -78.59 248.35 4.08 -74.52 By element: Atomic # 1 Polarization: 2.45 SS G_CDS: 1.04 Total: 3.49 kcal Atomic # 6 Polarization: -6.72 SS G_CDS: 3.22 Total: -3.50 kcal Atomic # 7 Polarization: -86.45 SS G_CDS: -2.02 Total: -88.47 kcal Atomic # 8 Polarization: -33.58 SS G_CDS: -0.05 Total: -33.63 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 1.88 Total: 47.60 kcal Total: -78.59 4.08 -74.52 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261088542.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.340 kcal (2) G-P(sol) polarization free energy of solvation -78.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds