Wall clock time and date at job start Mon Mar 30 2020 02:24:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.66699 * 2 1 4 4 C 1.53342 * 109.67481 * 120.49609 * 2 1 3 5 5 C 1.52912 * 108.67636 * 187.29766 * 4 2 1 6 6 N 1.45759 * 110.49090 * 309.25261 * 5 4 2 7 7 C 1.46499 * 117.94678 * 199.07094 * 6 5 4 8 8 C 1.50701 * 109.46992 * 89.99887 * 7 6 5 9 9 H 1.07998 * 120.00129 * 0.02562 * 8 7 6 10 10 C 1.37880 * 119.99861 * 179.97438 * 8 7 6 11 11 N 1.31510 * 119.99913 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 119.99734 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.47432 * 0.02562 * 12 10 8 14 14 H 1.48506 * 109.46890 * 120.00210 * 12 10 8 15 15 H 1.48501 * 109.47062 * 240.00257 * 12 10 8 16 16 C 1.33350 * 124.10324 * 19.35089 * 6 5 4 17 17 O 1.21281 * 118.24766 * 177.49963 * 16 6 5 18 18 C 1.50199 * 123.49370 * 357.22214 * 16 6 5 19 19 H 1.09001 * 109.47410 * 299.49820 * 1 2 3 20 20 H 1.09002 * 109.47155 * 59.50027 * 1 2 3 21 21 H 1.09003 * 109.47404 * 179.50137 * 1 2 3 22 22 H 1.09011 * 109.60150 * 67.54386 * 4 2 1 23 23 H 1.09003 * 109.74246 * 307.14212 * 4 2 1 24 24 H 1.08998 * 109.30191 * 188.93649 * 5 4 2 25 25 H 1.09004 * 109.13250 * 69.45309 * 5 4 2 26 26 H 1.09002 * 109.47391 * 329.99877 * 7 6 5 27 27 H 1.09001 * 109.46813 * 209.99934 * 7 6 5 28 28 H 0.97002 * 119.99768 * 179.97438 * 11 10 8 29 29 H 1.09004 * 109.60109 * 257.84817 * 18 16 6 30 30 H 1.09000 * 109.19003 * 138.03063 * 18 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8969 1.0265 0.0000 4 6 2.0463 -0.7327 1.2442 5 6 3.5641 -0.5627 1.3180 6 7 4.1799 -0.9184 0.0456 7 6 5.6114 -1.2295 0.0389 8 6 5.8059 -2.7050 0.2759 9 1 4.9489 -3.3469 0.4169 10 6 7.0780 -3.2357 0.3115 11 7 8.1216 -2.4542 0.1393 12 14 7.3190 -5.0647 0.6046 13 1 5.9956 -5.7188 0.7666 14 1 8.0275 -5.6627 -0.5555 15 1 8.1255 -5.2669 1.8350 16 6 3.5229 -0.9731 -1.1135 17 8 4.1507 -1.2367 -2.1172 18 6 2.0460 -0.7317 -1.2414 19 1 -0.3634 0.5060 0.8944 20 1 -0.3633 0.5216 -0.8855 21 1 -0.3634 -1.0276 -0.0089 22 1 1.8000 -1.7923 1.1730 23 1 1.5869 -0.3098 2.1376 24 1 3.9610 -1.2065 2.1028 25 1 3.7962 0.4762 1.5525 26 1 6.1095 -0.6660 0.8280 27 1 6.0378 -0.9572 -0.9266 28 1 9.0165 -2.8275 0.1648 29 1 1.5270 -1.6850 -1.3418 30 1 1.8578 -0.1222 -2.1253 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261088544.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:08 Heat of formation + Delta-G solvation = -76.273298 kcal Electronic energy + Delta-G solvation = -12811.997432 eV Core-core repulsion = 10605.507484 eV Total energy + Delta-G solvation = -2206.489949 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.25526 -37.63600 -36.16530 -34.46088 -30.76786 -29.96355 -27.98423 -24.72620 -24.55478 -21.84433 -19.49268 -18.74529 -17.39721 -17.32105 -16.42257 -16.14500 -15.42335 -15.18709 -14.36173 -14.16789 -14.00364 -13.51709 -13.20640 -12.91684 -12.83953 -12.64583 -12.50113 -12.24850 -11.96181 -11.73848 -11.53436 -11.43821 -10.67667 -10.43933 -9.46832 -8.25125 -6.40145 1.34253 1.37196 1.49156 1.84564 2.32015 2.47431 3.04413 3.75029 3.83314 3.84889 3.98458 4.49678 4.54844 4.67843 4.74686 4.87008 4.90803 4.98054 5.03647 5.11447 5.20682 5.25568 5.38659 5.52068 5.53740 5.79526 6.03591 6.67826 6.86706 7.26177 7.49001 8.83025 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.053609 B = 0.009514 C = 0.009225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.179522 B = 2942.244845 C = 3034.394283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.089 4.089 3 H 0.079 0.921 4 C -0.121 4.121 5 C 0.107 3.893 6 N -0.594 5.594 7 C 0.249 3.751 8 C -0.542 4.542 9 H 0.052 0.948 10 C 0.005 3.995 11 N -0.930 5.930 12 Si 0.972 3.028 13 H -0.266 1.266 14 H -0.281 1.281 15 H -0.266 1.266 16 C 0.490 3.510 17 O -0.622 6.622 18 C -0.117 4.117 19 H 0.075 0.925 20 H 0.063 0.937 21 H 0.059 0.941 22 H 0.065 0.935 23 H 0.116 0.884 24 H 0.068 0.932 25 H 0.072 0.928 26 H 0.022 0.978 27 H -0.001 1.001 28 H 0.268 0.732 29 H 0.104 0.896 30 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.429 4.378 4.743 16.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.108 4.108 3 H 0.098 0.902 4 C -0.158 4.158 5 C -0.016 4.016 6 N -0.324 5.324 7 C 0.127 3.873 8 C -0.581 4.581 9 H 0.070 0.930 10 C -0.194 4.194 11 N -0.569 5.569 12 Si 0.796 3.204 13 H -0.190 1.190 14 H -0.207 1.207 15 H -0.191 1.191 16 C 0.280 3.720 17 O -0.506 6.506 18 C -0.157 4.157 19 H 0.094 0.906 20 H 0.082 0.918 21 H 0.078 0.922 22 H 0.083 0.917 23 H 0.134 0.866 24 H 0.086 0.914 25 H 0.090 0.910 26 H 0.040 0.960 27 H 0.017 0.983 28 H 0.077 0.923 29 H 0.122 0.878 30 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -14.955 4.269 4.274 16.129 hybrid contribution 0.968 -0.873 -0.149 1.312 sum -13.987 3.396 4.124 14.973 Atomic orbital electron populations 1.21755 0.91848 1.02659 1.03102 1.21252 0.97961 0.99241 0.92307 0.90216 1.21967 0.92158 1.01653 1.00062 1.21586 0.94944 1.00564 0.84463 1.47626 1.10909 1.65520 1.08357 1.18821 0.77526 0.95260 0.95660 1.21688 0.92593 0.94246 1.49527 0.92966 1.25924 0.95368 1.03519 0.94595 1.70068 0.98911 1.37495 1.50472 0.85307 0.78412 0.78597 0.78115 1.19050 1.20655 1.19131 1.21097 0.91889 0.76594 0.82437 1.90643 1.69980 1.52307 1.37657 1.21744 0.88409 1.03827 1.01722 0.90580 0.91750 0.92181 0.91667 0.86598 0.91393 0.91011 0.96035 0.98297 0.92331 0.87795 0.88000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.20 71.98 0.66 -1.32 16 2 C -0.09 -1.91 2.79 -10.66 -0.03 -1.94 16 3 H 0.08 1.68 8.13 -2.38 -0.02 1.66 16 4 C -0.12 -2.75 5.32 30.68 0.16 -2.59 16 5 C 0.11 3.47 6.32 86.49 0.55 4.02 16 6 N -0.59 -26.91 2.79 -830.96 -2.32 -29.23 16 7 C 0.25 14.22 4.98 85.63 0.43 14.64 16 8 C -0.54 -32.57 9.37 25.60 0.24 -32.33 16 9 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 10 C 0.00 0.28 5.46 84.66 0.46 0.74 16 11 N -0.93 -57.94 13.29 21.45 0.28 -57.66 16 12 Si 0.97 45.98 29.54 68.60 2.03 48.01 16 13 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 14 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 15 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 16 C 0.49 22.04 7.46 87.72 0.65 22.69 16 17 O -0.62 -35.29 16.18 -3.03 -0.05 -35.34 16 18 C -0.12 -3.47 5.36 29.71 0.16 -3.32 16 19 H 0.08 0.85 8.14 -2.39 -0.02 0.84 16 20 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 21 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 22 H 0.06 1.58 8.12 -2.38 -0.02 1.56 16 23 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 24 H 0.07 2.34 8.10 -2.39 -0.02 2.32 16 25 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 26 H 0.02 1.24 8.01 -2.39 -0.02 1.22 16 27 H 0.00 -0.07 7.12 -2.39 -0.02 -0.09 16 28 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 29 H 0.10 2.84 8.10 -2.38 -0.02 2.82 16 30 H 0.10 2.77 8.14 -2.39 -0.02 2.75 16 Total: -1.00 -76.57 251.94 4.32 -72.25 By element: Atomic # 1 Polarization: 0.26 SS G_CDS: 1.10 Total: 1.36 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: 3.28 Total: 0.61 kcal Atomic # 7 Polarization: -84.85 SS G_CDS: -2.04 Total: -86.89 kcal Atomic # 8 Polarization: -35.29 SS G_CDS: -0.05 Total: -35.34 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Total: -76.57 4.32 -72.25 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261088544.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.026 kcal (2) G-P(sol) polarization free energy of solvation -76.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds