Wall clock time and date at job start Mon Mar 30 2020 02:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.60476 * 2 1 4 4 C 1.53345 * 109.59946 * 239.51210 * 2 1 3 5 5 C 1.53256 * 108.26183 * 172.53207 * 4 2 1 6 6 C 1.50174 * 109.79597 * 49.28412 * 5 4 2 7 7 O 1.21283 * 118.25021 * 162.23381 * 6 5 4 8 8 N 1.33350 * 123.50638 * 341.94903 * 6 5 4 9 9 C 1.46504 * 117.95070 * 182.50418 * 8 6 5 10 10 C 1.50696 * 109.47154 * 90.00034 * 9 8 6 11 11 H 1.07999 * 119.99933 * 0.02562 * 10 9 8 12 12 C 1.37878 * 120.00021 * 180.02562 * 10 9 8 13 13 N 1.31509 * 119.99911 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 119.99755 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46939 * 60.00183 * 14 12 10 16 16 H 1.48500 * 109.46877 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47214 * 299.99721 * 14 12 10 18 18 C 1.45758 * 124.10891 * 2.48437 * 8 6 5 19 19 H 1.09002 * 109.46832 * 299.67270 * 1 2 3 20 20 H 1.09004 * 109.46905 * 59.67189 * 1 2 3 21 21 H 1.08993 * 109.47579 * 179.67188 * 1 2 3 22 22 H 1.09002 * 109.67647 * 292.44526 * 4 2 1 23 23 H 1.09002 * 109.67893 * 52.94787 * 4 2 1 24 24 H 1.08999 * 109.60030 * 289.08971 * 5 4 2 25 25 H 1.09003 * 109.30020 * 169.29004 * 5 4 2 26 26 H 1.08997 * 109.47508 * 210.00657 * 9 8 6 27 27 H 1.09000 * 109.46573 * 330.00054 * 9 8 6 28 28 H 0.97003 * 120.00149 * 180.02562 * 13 12 10 29 29 H 1.08997 * 109.30094 * 101.25415 * 18 8 6 30 30 H 1.08994 * 109.30118 * 220.83963 * 18 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8957 1.0268 0.0000 4 6 2.0444 -0.7329 -1.2449 5 6 3.5649 -0.5539 -1.3136 6 6 4.1768 -0.8864 0.0169 7 8 5.3668 -1.1170 0.0600 8 7 3.4828 -0.9364 1.1545 9 6 4.2133 -1.2185 2.3927 10 6 4.6770 0.0763 3.0085 11 1 4.4500 1.0155 2.5261 12 6 5.3912 0.0620 4.1878 13 7 5.6681 -1.0817 4.7750 14 14 5.9667 1.6671 4.9508 15 1 4.7901 2.5207 5.2542 16 1 6.7070 1.3811 6.2059 17 1 6.8599 2.3753 3.9991 18 6 2.0430 -0.7275 1.2434 19 1 -0.3633 0.5088 0.8929 20 1 -0.3633 0.5189 -0.8871 21 1 -0.3634 -1.0275 -0.0059 22 1 1.7984 -1.7925 -1.1748 23 1 1.5849 -0.3077 -2.1372 24 1 3.8002 0.4785 -1.5725 25 1 3.9719 -1.2186 -2.0756 26 1 3.5576 -1.7387 3.0909 27 1 5.0771 -1.8450 2.1701 28 1 6.1702 -1.0918 5.6049 29 1 1.5435 -1.6925 1.3280 30 1 1.8198 -0.1278 2.1258 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261100986.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:58 Heat of formation + Delta-G solvation = -53.202563 kcal Electronic energy + Delta-G solvation = -12845.140311 eV Core-core repulsion = 10639.650785 eV Total energy + Delta-G solvation = -2205.489526 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.61722 -36.26054 -34.06912 -32.18371 -30.79236 -27.40770 -25.65546 -23.96469 -22.61710 -20.57777 -18.02974 -16.47377 -15.79648 -15.53034 -14.74537 -14.29726 -14.14610 -13.73504 -12.85823 -12.59529 -12.38891 -12.08501 -12.01892 -11.32953 -11.03605 -10.98271 -10.81169 -10.58588 -10.42978 -10.39223 -10.08617 -9.56613 -8.68850 -8.38375 -7.58931 -6.00144 -4.04474 3.33906 3.38196 3.40883 3.57991 4.06880 4.48200 4.86541 4.93094 4.98549 5.20478 5.34190 5.55468 5.65542 5.74954 5.82313 5.89149 6.04499 6.07476 6.08355 6.20392 6.33642 6.50582 7.13940 7.54742 7.57139 7.96330 8.28769 8.59797 8.95817 9.20722 9.60016 11.08213 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.042692 B = 0.010521 C = 0.009587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.709370 B = 2660.815127 C = 2919.867363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.111 4.111 3 H 0.078 0.922 4 C -0.115 4.115 5 C -0.135 4.135 6 C 0.503 3.497 7 O -0.558 6.558 8 N -0.591 5.591 9 C 0.237 3.763 10 C -0.524 4.524 11 H 0.055 0.945 12 C 0.060 3.940 13 N -0.895 5.895 14 Si 0.898 3.102 15 H -0.277 1.277 16 H -0.286 1.286 17 H -0.276 1.276 18 C 0.123 3.877 19 H 0.058 0.942 20 H 0.055 0.945 21 H 0.056 0.944 22 H 0.067 0.933 23 H 0.068 0.932 24 H 0.090 0.910 25 H 0.089 0.911 26 H 0.030 0.970 27 H 0.048 0.952 28 H 0.263 0.737 29 H 0.054 0.946 30 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.709 1.663 -9.107 14.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.130 4.130 3 H 0.096 0.904 4 C -0.152 4.152 5 C -0.175 4.175 6 C 0.290 3.710 7 O -0.437 6.437 8 N -0.322 5.322 9 C 0.118 3.882 10 C -0.563 4.563 11 H 0.074 0.926 12 C -0.141 4.141 13 N -0.534 5.534 14 Si 0.726 3.274 15 H -0.203 1.203 16 H -0.212 1.212 17 H -0.202 1.202 18 C -0.001 4.001 19 H 0.077 0.923 20 H 0.074 0.926 21 H 0.075 0.925 22 H 0.086 0.914 23 H 0.086 0.914 24 H 0.108 0.892 25 H 0.108 0.892 26 H 0.048 0.952 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -10.008 1.453 -8.914 13.481 hybrid contribution 0.287 0.936 0.544 1.120 sum -9.721 2.389 -8.370 13.049 Atomic orbital electron populations 1.21726 0.94366 1.01918 1.01829 1.21489 0.96017 1.00361 0.95122 0.90392 1.21727 0.94685 1.00973 0.97836 1.21685 0.95884 1.03722 0.96237 1.19827 0.87211 0.78372 0.85563 1.90684 1.15699 1.50349 1.86993 1.47547 1.07340 1.68148 1.09150 1.19324 0.92561 0.97126 0.79198 1.21368 1.35107 0.92861 1.06962 0.92636 1.24935 0.95754 0.96521 0.96932 1.69927 1.39970 1.24878 1.18647 0.86563 0.78868 0.83585 0.78420 1.20281 1.21165 1.20203 1.21289 0.81531 0.99290 0.97976 0.92308 0.92570 0.92533 0.91432 0.91354 0.89165 0.89208 0.95203 0.93440 0.92710 0.92823 0.90523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 9.19 37.16 0.34 -1.08 16 2 C -0.11 -1.47 2.79 -90.48 -0.25 -1.72 16 3 H 0.08 1.09 8.12 -51.93 -0.42 0.67 16 4 C -0.11 -1.42 5.34 -26.42 -0.14 -1.56 16 5 C -0.14 -2.11 6.04 -28.01 -0.17 -2.28 16 6 C 0.50 11.13 7.45 -11.87 -0.09 11.05 16 7 O -0.56 -15.12 16.18 5.55 0.09 -15.03 16 8 N -0.59 -13.15 2.80 -176.34 -0.49 -13.64 16 9 C 0.24 6.47 4.97 -5.19 -0.03 6.44 16 10 C -0.52 -15.31 9.37 -34.44 -0.32 -15.64 16 11 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 12 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 13 N -0.90 -27.21 13.29 55.43 0.74 -26.48 16 14 Si 0.90 22.28 29.54 -169.99 -5.02 17.26 16 15 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 16 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 17 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 18 C 0.12 2.10 5.63 -4.48 -0.03 2.07 16 19 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 20 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 21 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 22 H 0.07 0.82 8.13 -51.93 -0.42 0.40 16 23 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 24 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 25 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 26 H 0.03 0.82 8.01 -51.93 -0.42 0.40 16 27 H 0.05 1.46 7.13 -51.93 -0.37 1.09 16 28 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 29 H 0.05 0.83 8.11 -51.93 -0.42 0.41 16 30 H 0.08 1.36 8.10 -51.93 -0.42 0.94 16 LS Contribution 251.95 15.07 3.80 3.80 Total: -1.00 -33.55 251.95 -6.23 -39.77 By element: Atomic # 1 Polarization: -0.07 SS G_CDS: -4.55 Total: -4.63 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: -0.78 Total: -1.04 kcal Atomic # 7 Polarization: -40.36 SS G_CDS: 0.24 Total: -40.12 kcal Atomic # 8 Polarization: -15.12 SS G_CDS: 0.09 Total: -15.03 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -33.55 -6.23 -39.77 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261100986.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.430 kcal (2) G-P(sol) polarization free energy of solvation -33.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds