Wall clock time and date at job start Mon Mar 30 2020 02:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.60476 * 2 1 4 4 C 1.53345 * 109.59946 * 239.51210 * 2 1 3 5 5 C 1.53256 * 108.26183 * 172.53207 * 4 2 1 6 6 C 1.50174 * 109.79597 * 49.28412 * 5 4 2 7 7 O 1.21283 * 118.25021 * 162.23381 * 6 5 4 8 8 N 1.33350 * 123.50638 * 341.94903 * 6 5 4 9 9 C 1.46504 * 117.95070 * 182.50418 * 8 6 5 10 10 C 1.50696 * 109.47154 * 90.00034 * 9 8 6 11 11 H 1.07999 * 119.99933 * 0.02562 * 10 9 8 12 12 C 1.37878 * 120.00021 * 180.02562 * 10 9 8 13 13 N 1.31509 * 119.99911 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 119.99755 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46939 * 60.00183 * 14 12 10 16 16 H 1.48500 * 109.46877 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47214 * 299.99721 * 14 12 10 18 18 C 1.45758 * 124.10891 * 2.48437 * 8 6 5 19 19 H 1.09002 * 109.46832 * 299.67270 * 1 2 3 20 20 H 1.09004 * 109.46905 * 59.67189 * 1 2 3 21 21 H 1.08993 * 109.47579 * 179.67188 * 1 2 3 22 22 H 1.09002 * 109.67647 * 292.44526 * 4 2 1 23 23 H 1.09002 * 109.67893 * 52.94787 * 4 2 1 24 24 H 1.08999 * 109.60030 * 289.08971 * 5 4 2 25 25 H 1.09003 * 109.30020 * 169.29004 * 5 4 2 26 26 H 1.08997 * 109.47508 * 210.00657 * 9 8 6 27 27 H 1.09000 * 109.46573 * 330.00054 * 9 8 6 28 28 H 0.97003 * 120.00149 * 180.02562 * 13 12 10 29 29 H 1.08997 * 109.30094 * 101.25415 * 18 8 6 30 30 H 1.08994 * 109.30118 * 220.83963 * 18 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8957 1.0268 0.0000 4 6 2.0444 -0.7329 -1.2449 5 6 3.5649 -0.5539 -1.3136 6 6 4.1768 -0.8864 0.0169 7 8 5.3668 -1.1170 0.0600 8 7 3.4828 -0.9364 1.1545 9 6 4.2133 -1.2185 2.3927 10 6 4.6770 0.0763 3.0085 11 1 4.4500 1.0155 2.5261 12 6 5.3912 0.0620 4.1878 13 7 5.6681 -1.0817 4.7750 14 14 5.9667 1.6671 4.9508 15 1 4.7901 2.5207 5.2542 16 1 6.7070 1.3811 6.2059 17 1 6.8599 2.3753 3.9991 18 6 2.0430 -0.7275 1.2434 19 1 -0.3633 0.5088 0.8929 20 1 -0.3633 0.5189 -0.8871 21 1 -0.3634 -1.0275 -0.0059 22 1 1.7984 -1.7925 -1.1748 23 1 1.5849 -0.3077 -2.1372 24 1 3.8002 0.4785 -1.5725 25 1 3.9719 -1.2186 -2.0756 26 1 3.5576 -1.7387 3.0909 27 1 5.0771 -1.8450 2.1701 28 1 6.1702 -1.0918 5.6049 29 1 1.5435 -1.6925 1.3280 30 1 1.8198 -0.1278 2.1258 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261100986.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:57 Heat of formation + Delta-G solvation = -76.081779 kcal Electronic energy + Delta-G solvation = -12846.132428 eV Core-core repulsion = 10639.650785 eV Total energy + Delta-G solvation = -2206.481644 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.25116 -37.76759 -35.92269 -34.21564 -32.00644 -29.43369 -27.00810 -25.52360 -24.35770 -21.92470 -19.49276 -18.71632 -17.41714 -17.29981 -16.54723 -15.99260 -15.40834 -15.13837 -14.41134 -14.07571 -13.96043 -13.48982 -13.32368 -13.14625 -12.90820 -12.63983 -12.27742 -12.22138 -11.89321 -11.85429 -11.56842 -11.42521 -10.66945 -10.43074 -9.47580 -8.24874 -6.40114 1.34136 1.39238 1.46673 1.84950 2.31684 2.46869 3.04420 3.73237 3.82920 3.87914 3.98914 4.48936 4.55534 4.70337 4.73973 4.83368 4.87895 4.97976 5.01890 5.11134 5.22285 5.26075 5.38940 5.49259 5.55181 5.79287 6.03264 6.67059 6.86217 7.25990 7.48972 8.82823 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.042692 B = 0.010521 C = 0.009587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.709370 B = 2660.815127 C = 2919.867363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.104 4.104 3 H 0.071 0.929 4 C -0.106 4.106 5 C -0.124 4.124 6 C 0.489 3.511 7 O -0.622 6.622 8 N -0.595 5.595 9 C 0.250 3.750 10 C -0.544 4.544 11 H 0.052 0.948 12 C 0.005 3.995 13 N -0.929 5.929 14 Si 0.971 3.029 15 H -0.259 1.259 16 H -0.276 1.276 17 H -0.277 1.277 18 C 0.114 3.886 19 H 0.057 0.943 20 H 0.080 0.920 21 H 0.065 0.935 22 H 0.073 0.927 23 H 0.110 0.890 24 H 0.106 0.894 25 H 0.105 0.895 26 H 0.020 0.980 27 H -0.001 1.001 28 H 0.268 0.732 29 H 0.070 0.930 30 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.624 3.154 -10.307 16.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.123 4.123 3 H 0.090 0.910 4 C -0.143 4.143 5 C -0.163 4.163 6 C 0.278 3.722 7 O -0.506 6.506 8 N -0.324 5.324 9 C 0.128 3.872 10 C -0.582 4.582 11 H 0.070 0.930 12 C -0.194 4.194 13 N -0.568 5.568 14 Si 0.795 3.205 15 H -0.183 1.183 16 H -0.201 1.201 17 H -0.203 1.203 18 C -0.008 4.008 19 H 0.076 0.924 20 H 0.099 0.901 21 H 0.084 0.916 22 H 0.092 0.908 23 H 0.128 0.872 24 H 0.124 0.876 25 H 0.124 0.876 26 H 0.038 0.962 27 H 0.017 0.983 28 H 0.077 0.923 29 H 0.088 0.912 30 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -11.990 2.949 -10.130 15.971 hybrid contribution 0.882 0.410 0.929 1.345 sum -11.108 3.359 -9.200 14.809 Atomic orbital electron populations 1.21687 0.91390 1.02981 1.03033 1.21483 0.98245 0.99315 0.93253 0.91047 1.21761 0.91921 1.01665 0.98967 1.21700 0.98115 1.04776 0.91725 1.21161 0.86651 0.76783 0.87561 1.90644 1.18701 1.53090 1.88147 1.47615 1.09401 1.67682 1.07718 1.18807 0.91303 0.95823 0.81252 1.21618 1.35881 0.93154 1.07585 0.93013 1.25922 0.95532 1.00537 0.97361 1.70053 1.40379 1.27297 1.19107 0.85421 0.78822 0.78819 0.77470 1.18290 1.20090 1.20278 1.21636 0.78442 1.00660 1.00092 0.92393 0.90137 0.91571 0.90830 0.87153 0.87616 0.87642 0.96168 0.98259 0.92319 0.91205 0.91846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.15 9.19 71.98 0.66 -1.49 16 2 C -0.10 -2.45 2.79 -10.70 -0.03 -2.48 16 3 H 0.07 1.80 8.12 -2.39 -0.02 1.78 16 4 C -0.11 -2.19 5.34 30.80 0.16 -2.03 16 5 C -0.12 -3.58 6.04 29.77 0.18 -3.40 16 6 C 0.49 21.94 7.45 87.71 0.65 22.60 16 7 O -0.62 -35.26 16.18 -3.04 -0.05 -35.31 16 8 N -0.59 -27.09 2.80 -831.00 -2.32 -29.41 16 9 C 0.25 14.33 4.97 85.63 0.43 14.76 16 10 C -0.54 -32.78 9.37 25.60 0.24 -32.54 16 11 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 12 C 0.01 0.32 5.46 84.66 0.46 0.78 16 13 N -0.93 -57.97 13.29 21.45 0.28 -57.69 16 14 Si 0.97 46.01 29.54 68.60 2.03 48.04 16 15 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 16 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 17 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 18 C 0.11 3.80 5.63 86.49 0.49 4.29 16 19 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 20 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 21 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 22 H 0.07 1.49 8.13 -2.39 -0.02 1.47 16 23 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 24 H 0.11 2.78 8.14 -2.39 -0.02 2.76 16 25 H 0.11 2.75 8.14 -2.39 -0.02 2.73 16 26 H 0.02 1.17 8.01 -2.39 -0.02 1.15 16 27 H 0.00 -0.05 7.13 -2.39 -0.02 -0.06 16 28 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 29 H 0.07 2.09 8.11 -2.39 -0.02 2.07 16 30 H 0.06 2.26 8.10 -2.39 -0.02 2.24 16 Total: -1.00 -76.75 251.95 4.28 -72.47 By element: Atomic # 1 Polarization: 0.31 SS G_CDS: 1.10 Total: 1.40 kcal Atomic # 6 Polarization: -2.75 SS G_CDS: 3.24 Total: 0.49 kcal Atomic # 7 Polarization: -85.06 SS G_CDS: -2.04 Total: -87.10 kcal Atomic # 8 Polarization: -35.26 SS G_CDS: -0.05 Total: -35.31 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.04 kcal Total: -76.75 4.28 -72.47 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261100986.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.609 kcal (2) G-P(sol) polarization free energy of solvation -76.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds