Wall clock time and date at job start Mon Mar 30 2020 02:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.60364 * 2 1 4 4 C 1.53336 * 109.73984 * 120.40930 * 2 1 3 5 5 C 1.53073 * 108.42581 * 187.36776 * 4 2 1 6 6 C 1.50175 * 109.89171 * 311.09931 * 5 4 2 7 7 O 1.21277 * 118.25217 * 197.55951 * 6 5 4 8 8 N 1.32957 * 123.39195 * 17.52991 * 6 5 4 9 9 C 1.46505 * 117.64571 * 177.87223 * 8 6 5 10 10 C 1.50695 * 109.46977 * 270.00611 * 9 8 6 11 11 H 1.08000 * 120.00371 * 0.02562 * 10 9 8 12 12 C 1.37875 * 119.99902 * 179.97438 * 10 9 8 13 13 N 1.31513 * 120.00307 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 120.00218 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47028 * 59.99792 * 14 12 10 16 16 H 1.48496 * 109.47574 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47079 * 300.00307 * 14 12 10 18 18 C 1.45758 * 124.41276 * 357.87592 * 8 6 5 19 19 H 1.08994 * 109.46704 * 180.32361 * 1 2 3 20 20 H 1.09001 * 109.46438 * 300.32354 * 1 2 3 21 21 H 1.08992 * 109.47191 * 60.31850 * 1 2 3 22 22 H 1.08998 * 109.67812 * 307.09816 * 4 2 1 23 23 H 1.08998 * 109.67685 * 67.59899 * 4 2 1 24 24 H 1.08999 * 109.40436 * 71.22797 * 5 4 2 25 25 H 1.09004 * 109.40164 * 190.97625 * 5 4 2 26 26 H 1.09003 * 109.46913 * 30.00395 * 9 8 6 27 27 H 1.08997 * 109.47279 * 150.00158 * 9 8 6 28 28 H 0.96994 * 120.00276 * 180.02562 * 13 12 10 29 29 H 1.09002 * 109.30363 * 258.75736 * 18 8 6 30 30 H 1.08998 * 109.30258 * 139.17301 * 18 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8957 1.0268 0.0000 4 6 2.0479 -0.7305 1.2447 5 6 3.5670 -0.5542 1.3122 6 6 4.1789 -0.8804 -0.0199 7 8 5.3693 -1.1081 -0.0645 8 7 3.4831 -0.9328 -1.1516 9 6 4.2163 -1.2165 -2.3879 10 6 4.6788 0.0777 -3.0058 11 1 4.4500 1.0176 -2.5256 12 6 5.3952 0.0620 -4.1838 13 7 5.6744 -1.0825 -4.7684 14 14 5.9691 1.6663 -4.9495 15 1 6.8593 2.3784 -3.9977 16 1 6.7133 1.3787 -6.2019 17 1 4.7916 2.5172 -5.2570 18 6 2.0430 -0.7272 -1.2435 19 1 -0.3632 -1.0276 0.0058 20 1 -0.3632 0.5189 0.8871 21 1 -0.3633 0.5088 -0.8928 22 1 1.5892 -0.3053 2.1373 23 1 1.8037 -1.7906 1.1763 24 1 3.8004 0.4776 1.5749 25 1 3.9756 -1.2212 2.0713 26 1 5.0809 -1.8409 -2.1623 27 1 3.5628 -1.7395 -3.0861 28 1 6.1786 -1.0936 -5.5969 29 1 1.5457 -1.6936 -1.3266 30 1 1.8200 -0.1302 -2.1277 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261100988.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:00 Heat of formation + Delta-G solvation = -52.747350 kcal Electronic energy + Delta-G solvation = -12848.855597 eV Core-core repulsion = 10643.385810 eV Total energy + Delta-G solvation = -2205.469787 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.65252 -36.26162 -34.07430 -32.18927 -30.80484 -27.40902 -25.67731 -23.96347 -22.62324 -20.57691 -18.02470 -16.47759 -15.80929 -15.53396 -14.75127 -14.29685 -14.14468 -13.73825 -12.86128 -12.59335 -12.39265 -12.08771 -12.01826 -11.32647 -11.02881 -10.98224 -10.81078 -10.57923 -10.43339 -10.39816 -10.08598 -9.56558 -8.67961 -8.38164 -7.59927 -6.00123 -4.04422 3.33901 3.38287 3.40965 3.59228 4.07370 4.48289 4.85951 4.92932 4.99334 5.20631 5.34246 5.55651 5.65772 5.74736 5.82377 5.89171 6.04549 6.07613 6.08296 6.20401 6.33361 6.50364 7.14037 7.55024 7.56225 7.96330 8.28709 8.60592 8.95902 9.21439 9.60060 11.08294 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.042754 B = 0.010528 C = 0.009594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.756510 B = 2658.880518 C = 2917.815990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.111 4.111 3 H 0.077 0.923 4 C -0.115 4.115 5 C -0.136 4.136 6 C 0.504 3.496 7 O -0.558 6.558 8 N -0.590 5.590 9 C 0.236 3.764 10 C -0.524 4.524 11 H 0.055 0.945 12 C 0.060 3.940 13 N -0.895 5.895 14 Si 0.898 3.102 15 H -0.277 1.277 16 H -0.286 1.286 17 H -0.277 1.277 18 C 0.124 3.876 19 H 0.056 0.944 20 H 0.055 0.945 21 H 0.058 0.942 22 H 0.068 0.932 23 H 0.066 0.934 24 H 0.089 0.911 25 H 0.090 0.910 26 H 0.048 0.952 27 H 0.030 0.970 28 H 0.263 0.737 29 H 0.054 0.946 30 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.730 1.648 9.074 14.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.130 4.130 3 H 0.096 0.904 4 C -0.152 4.152 5 C -0.176 4.176 6 C 0.290 3.710 7 O -0.438 6.438 8 N -0.320 5.320 9 C 0.117 3.883 10 C -0.563 4.563 11 H 0.074 0.926 12 C -0.141 4.141 13 N -0.534 5.534 14 Si 0.726 3.274 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.203 1.203 18 C 0.000 4.000 19 H 0.075 0.925 20 H 0.074 0.926 21 H 0.077 0.923 22 H 0.086 0.914 23 H 0.085 0.915 24 H 0.108 0.892 25 H 0.108 0.892 26 H 0.066 0.934 27 H 0.048 0.952 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -10.033 1.440 8.882 13.477 hybrid contribution 0.290 0.937 -0.540 1.120 sum -9.743 2.377 8.342 13.045 Atomic orbital electron populations 1.21720 0.94346 1.01920 1.01835 1.21484 0.96017 1.00377 0.95108 0.90410 1.21687 0.94715 1.00980 0.97836 1.21662 0.95877 1.03742 0.96333 1.19698 0.87232 0.78431 0.85592 1.90686 1.15647 1.50490 1.86982 1.47451 1.07345 1.67951 1.09291 1.19338 0.92548 0.97145 0.79296 1.21362 1.35041 0.92833 1.07043 0.92639 1.24934 0.95756 0.96516 0.96933 1.69924 1.39859 1.24843 1.18798 0.86562 0.78857 0.83580 0.78434 1.20211 1.21166 1.20277 1.21299 0.81427 0.99331 0.97985 0.92530 0.92570 0.92296 0.91350 0.91476 0.89226 0.89198 0.93391 0.95209 0.92710 0.92789 0.90470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 9.20 37.16 0.34 -1.08 16 2 C -0.11 -1.47 2.79 -90.48 -0.25 -1.72 16 3 H 0.08 1.09 8.12 -51.93 -0.42 0.66 16 4 C -0.11 -1.42 5.33 -26.52 -0.14 -1.56 16 5 C -0.14 -2.12 6.03 -28.10 -0.17 -2.29 16 6 C 0.50 11.15 7.44 -12.05 -0.09 11.07 16 7 O -0.56 -15.16 16.15 5.56 0.09 -15.07 16 8 N -0.59 -13.11 2.79 -176.45 -0.49 -13.60 16 9 C 0.24 6.43 4.96 -5.19 -0.03 6.41 16 10 C -0.52 -15.31 9.37 -34.44 -0.32 -15.63 16 11 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 12 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 13 N -0.90 -27.22 13.29 55.43 0.74 -26.48 16 14 Si 0.90 22.28 29.54 -169.99 -5.02 17.26 16 15 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 16 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 17 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 18 C 0.12 2.10 5.64 -4.48 -0.03 2.08 16 19 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 20 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 21 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 22 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.07 0.82 8.13 -51.93 -0.42 0.39 16 24 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 25 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 26 H 0.05 1.48 7.11 -51.93 -0.37 1.11 16 27 H 0.03 0.81 8.01 -51.93 -0.42 0.40 16 28 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 29 H 0.05 0.84 8.12 -51.93 -0.42 0.41 16 30 H 0.08 1.37 8.10 -51.93 -0.42 0.95 16 LS Contribution 251.87 15.07 3.80 3.80 Total: -1.00 -33.55 251.87 -6.23 -39.77 By element: Atomic # 1 Polarization: -0.06 SS G_CDS: -4.55 Total: -4.61 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: -0.78 Total: -1.07 kcal Atomic # 7 Polarization: -40.33 SS G_CDS: 0.24 Total: -40.09 kcal Atomic # 8 Polarization: -15.16 SS G_CDS: 0.09 Total: -15.07 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -33.55 -6.23 -39.77 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261100988.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.973 kcal (2) G-P(sol) polarization free energy of solvation -33.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds