Wall clock time and date at job start Mon Mar 30 2020 02:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.60364 * 2 1 4 4 C 1.53336 * 109.73984 * 120.40930 * 2 1 3 5 5 C 1.53073 * 108.42581 * 187.36776 * 4 2 1 6 6 C 1.50175 * 109.89171 * 311.09931 * 5 4 2 7 7 O 1.21277 * 118.25217 * 197.55951 * 6 5 4 8 8 N 1.32957 * 123.39195 * 17.52991 * 6 5 4 9 9 C 1.46505 * 117.64571 * 177.87223 * 8 6 5 10 10 C 1.50695 * 109.46977 * 270.00611 * 9 8 6 11 11 H 1.08000 * 120.00371 * 0.02562 * 10 9 8 12 12 C 1.37875 * 119.99902 * 179.97438 * 10 9 8 13 13 N 1.31513 * 120.00307 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 120.00218 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47028 * 59.99792 * 14 12 10 16 16 H 1.48496 * 109.47574 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47079 * 300.00307 * 14 12 10 18 18 C 1.45758 * 124.41276 * 357.87592 * 8 6 5 19 19 H 1.08994 * 109.46704 * 180.32361 * 1 2 3 20 20 H 1.09001 * 109.46438 * 300.32354 * 1 2 3 21 21 H 1.08992 * 109.47191 * 60.31850 * 1 2 3 22 22 H 1.08998 * 109.67812 * 307.09816 * 4 2 1 23 23 H 1.08998 * 109.67685 * 67.59899 * 4 2 1 24 24 H 1.08999 * 109.40436 * 71.22797 * 5 4 2 25 25 H 1.09004 * 109.40164 * 190.97625 * 5 4 2 26 26 H 1.09003 * 109.46913 * 30.00395 * 9 8 6 27 27 H 1.08997 * 109.47279 * 150.00158 * 9 8 6 28 28 H 0.96994 * 120.00276 * 180.02562 * 13 12 10 29 29 H 1.09002 * 109.30363 * 258.75736 * 18 8 6 30 30 H 1.08998 * 109.30258 * 139.17301 * 18 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8957 1.0268 0.0000 4 6 2.0479 -0.7305 1.2447 5 6 3.5670 -0.5542 1.3122 6 6 4.1789 -0.8804 -0.0199 7 8 5.3693 -1.1081 -0.0645 8 7 3.4831 -0.9328 -1.1516 9 6 4.2163 -1.2165 -2.3879 10 6 4.6788 0.0777 -3.0058 11 1 4.4500 1.0176 -2.5256 12 6 5.3952 0.0620 -4.1838 13 7 5.6744 -1.0825 -4.7684 14 14 5.9691 1.6663 -4.9495 15 1 6.8593 2.3784 -3.9977 16 1 6.7133 1.3787 -6.2019 17 1 4.7916 2.5172 -5.2570 18 6 2.0430 -0.7272 -1.2435 19 1 -0.3632 -1.0276 0.0058 20 1 -0.3632 0.5189 0.8871 21 1 -0.3633 0.5088 -0.8928 22 1 1.5892 -0.3053 2.1373 23 1 1.8037 -1.7906 1.1763 24 1 3.8004 0.4776 1.5749 25 1 3.9756 -1.2212 2.0713 26 1 5.0809 -1.8409 -2.1623 27 1 3.5628 -1.7395 -3.0861 28 1 6.1786 -1.0936 -5.5969 29 1 1.5457 -1.6936 -1.3266 30 1 1.8200 -0.1302 -2.1277 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261100988.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:59 Heat of formation + Delta-G solvation = -75.621010 kcal Electronic energy + Delta-G solvation = -12849.847473 eV Core-core repulsion = 10643.385810 eV Total energy + Delta-G solvation = -2206.461663 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.28846 -37.76799 -35.92621 -34.22330 -32.02049 -29.43551 -27.02871 -25.52589 -24.36103 -21.92565 -19.48784 -18.71860 -17.43048 -17.30303 -16.55395 -15.99901 -15.40389 -15.13950 -14.40924 -14.08230 -13.96048 -13.49028 -13.32143 -13.14941 -12.90914 -12.63780 -12.27471 -12.21677 -11.89608 -11.85178 -11.57252 -11.42626 -10.66925 -10.42243 -9.48605 -8.24893 -6.40053 1.34120 1.39268 1.46673 1.86118 2.31831 2.47288 3.04467 3.73053 3.82871 3.87634 3.99296 4.48645 4.55810 4.70113 4.73601 4.83526 4.87946 4.97985 5.01822 5.11035 5.22328 5.26223 5.38901 5.48977 5.54978 5.78797 6.03188 6.67182 6.86973 7.26088 7.49593 8.82891 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.042754 B = 0.010528 C = 0.009594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.756510 B = 2658.880518 C = 2917.815990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.104 4.104 3 H 0.071 0.929 4 C -0.106 4.106 5 C -0.124 4.124 6 C 0.489 3.511 7 O -0.623 6.623 8 N -0.593 5.593 9 C 0.249 3.751 10 C -0.544 4.544 11 H 0.052 0.948 12 C 0.005 3.995 13 N -0.929 5.929 14 Si 0.971 3.029 15 H -0.277 1.277 16 H -0.276 1.276 17 H -0.258 1.258 18 C 0.114 3.886 19 H 0.065 0.935 20 H 0.080 0.920 21 H 0.057 0.943 22 H 0.110 0.890 23 H 0.073 0.927 24 H 0.105 0.895 25 H 0.105 0.895 26 H 0.000 1.000 27 H 0.020 0.980 28 H 0.268 0.732 29 H 0.070 0.930 30 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.654 3.131 10.262 16.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.123 4.123 3 H 0.089 0.911 4 C -0.143 4.143 5 C -0.164 4.164 6 C 0.278 3.722 7 O -0.507 6.507 8 N -0.322 5.322 9 C 0.127 3.873 10 C -0.582 4.582 11 H 0.070 0.930 12 C -0.193 4.193 13 N -0.568 5.568 14 Si 0.795 3.205 15 H -0.203 1.203 16 H -0.201 1.201 17 H -0.183 1.183 18 C -0.008 4.008 19 H 0.084 0.916 20 H 0.099 0.901 21 H 0.076 0.924 22 H 0.128 0.872 23 H 0.091 0.909 24 H 0.123 0.877 25 H 0.123 0.877 26 H 0.018 0.982 27 H 0.038 0.962 28 H 0.077 0.923 29 H 0.088 0.912 30 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.024 2.928 10.085 15.964 hybrid contribution 0.887 0.413 -0.922 1.345 sum -11.136 3.342 9.164 14.804 Atomic orbital electron populations 1.21682 0.91360 1.02988 1.03042 1.21478 0.98252 0.99321 0.93234 0.91080 1.21721 0.91945 1.01680 0.98978 1.21671 0.98115 1.04800 0.91810 1.21023 0.86673 0.76856 0.87614 1.90646 1.18651 1.53230 1.88146 1.47523 1.09398 1.67466 1.07835 1.18822 0.91304 0.95848 0.81334 1.21612 1.35811 0.93127 1.07663 0.93019 1.25920 0.95535 1.00526 0.97369 1.70051 1.40270 1.27259 1.19259 0.85422 0.78819 0.78820 0.77474 1.20296 1.20091 1.18277 1.21650 0.78332 1.00723 1.00091 0.91561 0.90149 0.92366 0.87159 0.90870 0.87689 0.87653 0.98206 0.96164 0.92320 0.91150 0.91771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.15 9.20 71.98 0.66 -1.48 16 2 C -0.10 -2.44 2.79 -10.71 -0.03 -2.47 16 3 H 0.07 1.79 8.12 -2.39 -0.02 1.77 16 4 C -0.11 -2.20 5.33 30.73 0.16 -2.04 16 5 C -0.12 -3.61 6.03 29.71 0.18 -3.43 16 6 C 0.49 21.97 7.44 87.77 0.65 22.63 16 7 O -0.62 -35.35 16.15 -3.02 -0.05 -35.40 16 8 N -0.59 -26.99 2.79 -831.55 -2.32 -29.31 16 9 C 0.25 14.26 4.96 85.63 0.42 14.68 16 10 C -0.54 -32.76 9.37 25.60 0.24 -32.52 16 11 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 12 C 0.01 0.32 5.46 84.65 0.46 0.78 16 13 N -0.93 -57.97 13.29 21.45 0.28 -57.69 16 14 Si 0.97 46.02 29.54 68.60 2.03 48.05 16 15 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 16 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 17 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 18 C 0.11 3.80 5.64 86.49 0.49 4.29 16 19 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 20 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 21 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 22 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 23 H 0.07 1.48 8.13 -2.39 -0.02 1.46 16 24 H 0.10 2.77 8.14 -2.39 -0.02 2.75 16 25 H 0.11 2.76 8.14 -2.39 -0.02 2.74 16 26 H 0.00 -0.01 7.11 -2.39 -0.02 -0.03 16 27 H 0.02 1.17 8.01 -2.39 -0.02 1.15 16 28 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 29 H 0.07 2.10 8.12 -2.39 -0.02 2.08 16 30 H 0.06 2.28 8.10 -2.39 -0.02 2.26 16 Total: -1.00 -76.74 251.87 4.29 -72.46 By element: Atomic # 1 Polarization: 0.36 SS G_CDS: 1.10 Total: 1.45 kcal Atomic # 6 Polarization: -2.81 SS G_CDS: 3.24 Total: 0.44 kcal Atomic # 7 Polarization: -84.96 SS G_CDS: -2.03 Total: -87.00 kcal Atomic # 8 Polarization: -35.35 SS G_CDS: -0.05 Total: -35.40 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.05 kcal Total: -76.74 4.29 -72.46 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261100988.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.163 kcal (2) G-P(sol) polarization free energy of solvation -76.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds