Wall clock time and date at job start Mon Mar 30 2020 02:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09009 * 109.46966 * 2 1 4 4 C 1.50693 * 109.47356 * 119.99974 * 2 1 3 5 5 H 1.08006 * 119.99853 * 120.00232 * 4 2 1 6 6 C 1.37874 * 120.00266 * 300.00283 * 4 2 1 7 7 N 1.31517 * 119.99788 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00381 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47179 * 60.00017 * 8 6 4 10 10 H 1.48498 * 109.47362 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.46897 * 300.00281 * 8 6 4 12 12 C 1.53003 * 109.47436 * 240.00414 * 2 1 3 13 13 H 1.08998 * 109.12424 * 299.48399 * 12 2 1 14 14 C 1.52919 * 109.29936 * 58.96084 * 12 2 1 15 15 C 1.53348 * 108.67459 * 171.06408 * 14 12 2 16 16 C 1.53068 * 108.42768 * 292.47226 * 15 14 12 17 17 C 1.50173 * 109.89049 * 48.89775 * 16 15 14 18 18 O 1.21285 * 118.24772 * 162.44211 * 17 16 15 19 19 N 1.33352 * 123.51082 * 342.41800 * 17 16 15 20 20 H 1.08997 * 109.47202 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.47190 * 300.00123 * 1 2 3 22 22 H 1.09004 * 109.47255 * 59.99859 * 1 2 3 23 23 H 0.97001 * 119.99922 * 180.02562 * 7 6 4 24 24 H 1.08997 * 109.60531 * 290.82159 * 14 12 2 25 25 H 1.09000 * 109.60462 * 51.31507 * 14 12 2 26 26 H 1.08993 * 109.67600 * 172.73232 * 15 14 12 27 27 H 1.09005 * 109.69702 * 52.22113 * 15 14 12 28 28 H 1.08995 * 109.39725 * 288.76724 * 16 15 14 29 29 H 1.09003 * 109.39843 * 169.02246 * 16 15 14 30 30 H 0.96998 * 117.95211 * 182.20367 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6992 -0.2394 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3214 -1.1204 4.0079 9 1 3.8064 -1.1209 4.0081 10 1 1.8259 -0.4207 5.2204 11 1 1.8259 -2.5203 4.0076 12 6 2.0400 -0.7212 -1.2493 13 1 1.6812 -1.7503 -1.2390 14 6 1.5069 -0.0124 -2.4951 15 6 2.2001 -0.6015 -3.7296 16 6 3.6797 -0.2118 -3.6857 17 6 4.2478 -0.5144 -2.3289 18 8 5.4534 -0.5756 -2.2120 19 7 3.4976 -0.7189 -1.2455 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3634 0.5139 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 0.7095 1.1617 3.4844 24 1 0.4307 -0.1671 -2.5714 25 1 1.7218 1.0541 -2.4292 26 1 1.7418 -0.2012 -4.6338 27 1 2.1063 -1.6874 -3.7205 28 1 3.7795 0.8541 -3.8906 29 1 4.2256 -0.7771 -4.4410 30 1 3.9501 -0.8764 -0.4022 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261218787.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:05 Heat of formation + Delta-G solvation = -63.297231 kcal Electronic energy + Delta-G solvation = -12910.270926 eV Core-core repulsion = 10704.343662 eV Total energy + Delta-G solvation = -2205.927264 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.70745 -36.59915 -33.91990 -32.32644 -30.92248 -27.80546 -25.31504 -23.89386 -22.16395 -19.78037 -18.59353 -16.75305 -16.23675 -15.40701 -14.91034 -14.53901 -13.61328 -13.56039 -13.27503 -12.90627 -12.38141 -11.63887 -11.42336 -11.19654 -10.94877 -10.71468 -10.67629 -10.55766 -10.39272 -10.09721 -9.70194 -9.13223 -8.88258 -8.45452 -8.15639 -6.08013 -4.16513 3.21927 3.28155 3.32976 3.36138 4.05414 4.36667 5.03274 5.09461 5.10802 5.24635 5.39530 5.74918 5.86611 5.99170 6.05866 6.14014 6.29939 6.51077 6.60834 6.81410 6.99641 7.12796 7.53968 7.60140 7.84433 7.95080 8.21054 8.31078 8.85432 8.88157 9.49928 10.97284 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.043870 B = 0.011161 C = 0.009391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.089943 B = 2508.022165 C = 2980.749865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.036 3.964 3 H 0.032 0.968 4 C -0.523 4.523 5 H 0.056 0.944 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.891 3.109 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.277 1.277 12 C 0.143 3.857 13 H 0.063 0.937 14 C -0.132 4.132 15 C -0.124 4.124 16 C -0.133 4.133 17 C 0.510 3.490 18 O -0.586 6.586 19 N -0.693 5.693 20 H 0.027 0.973 21 H 0.084 0.916 22 H 0.013 0.987 23 H 0.262 0.738 24 H 0.081 0.919 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.281 -1.658 -9.091 9.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.017 3.983 3 H 0.050 0.950 4 C -0.561 4.561 5 H 0.074 0.926 6 C -0.136 4.136 7 N -0.524 5.524 8 Si 0.719 3.281 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.203 1.203 12 C 0.038 3.962 13 H 0.081 0.919 14 C -0.170 4.170 15 C -0.162 4.162 16 C -0.173 4.173 17 C 0.296 3.704 18 O -0.468 6.468 19 N -0.343 5.343 20 H 0.046 0.954 21 H 0.103 0.897 22 H 0.032 0.968 23 H 0.072 0.928 24 H 0.099 0.901 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.111 0.889 29 H 0.109 0.891 30 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -0.889 -1.535 -9.090 9.261 hybrid contribution 0.320 -0.475 1.282 1.404 sum -0.569 -2.010 -7.808 8.082 Atomic orbital electron populations 1.21813 0.97851 0.99236 1.00564 1.19013 0.93082 0.96086 0.90144 0.95004 1.21057 1.31885 1.12541 0.90627 0.92623 1.24933 0.94837 0.94835 0.99027 1.69867 1.36279 1.22651 1.23619 0.86671 0.79356 0.79765 0.82327 1.20160 1.21285 1.20252 1.21254 0.78474 0.99622 0.96827 0.91925 1.22009 1.00770 1.00573 0.93668 1.21693 0.94236 1.01314 0.98922 1.21596 0.97088 1.03639 0.94994 1.20105 0.86738 0.76598 0.86961 1.90690 1.15299 1.54275 1.86543 1.45761 1.08136 1.69443 1.10961 0.95367 0.89699 0.96818 0.92834 0.90066 0.91326 0.91304 0.91538 0.88875 0.89087 0.75584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 8.60 37.15 0.32 -2.67 16 2 C 0.04 0.82 2.06 -91.78 -0.19 0.63 16 3 H 0.03 0.82 8.14 -51.92 -0.42 0.39 16 4 C -0.52 -13.42 7.75 -34.45 -0.27 -13.69 16 5 H 0.06 1.41 7.19 -52.48 -0.38 1.03 16 6 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -24.40 11.32 55.43 0.63 -23.77 16 8 Si 0.89 20.77 29.54 -169.99 -5.02 15.75 16 9 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 12 C 0.14 2.69 2.61 -68.37 -0.18 2.51 16 13 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 14 C -0.13 -2.02 4.62 -26.59 -0.12 -2.14 16 15 C -0.12 -1.57 6.03 -26.52 -0.16 -1.73 16 16 C -0.13 -1.89 6.03 -28.10 -0.17 -2.06 16 17 C 0.51 9.70 7.71 -11.87 -0.09 9.61 16 18 O -0.59 -13.24 17.78 5.55 0.10 -13.14 16 19 N -0.69 -13.65 5.11 -54.85 -0.28 -13.93 16 20 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 21 H 0.08 2.12 6.07 -51.93 -0.32 1.80 16 22 H 0.01 0.25 6.61 -51.93 -0.34 -0.10 16 23 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 24 H 0.08 1.15 6.93 -51.93 -0.36 0.79 16 25 H 0.07 1.08 8.11 -51.93 -0.42 0.66 16 26 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.07 0.83 8.13 -51.93 -0.42 0.41 16 28 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.41 8.68 7.32 -40.82 -0.30 8.38 16 LS Contribution 243.32 15.07 3.67 3.67 Total: -1.00 -28.89 243.32 -6.07 -34.96 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -4.21 Total: 4.37 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: -0.95 Total: -7.90 kcal Atomic # 7 Polarization: -38.05 SS G_CDS: 0.35 Total: -37.71 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: 0.10 Total: -13.14 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -28.89 -6.07 -34.96 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261218787.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.338 kcal (2) G-P(sol) polarization free energy of solvation -28.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds