Wall clock time and date at job start Mon Mar 30 2020 02:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09009 * 109.46966 * 2 1 4 4 C 1.50693 * 109.47356 * 119.99974 * 2 1 3 5 5 H 1.08006 * 119.99853 * 120.00232 * 4 2 1 6 6 C 1.37874 * 120.00266 * 300.00283 * 4 2 1 7 7 N 1.31517 * 119.99788 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00381 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47179 * 60.00017 * 8 6 4 10 10 H 1.48498 * 109.47362 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.46897 * 300.00281 * 8 6 4 12 12 C 1.53003 * 109.47436 * 240.00414 * 2 1 3 13 13 H 1.08998 * 109.12424 * 299.48399 * 12 2 1 14 14 C 1.52919 * 109.29936 * 58.96084 * 12 2 1 15 15 C 1.53348 * 108.67459 * 171.06408 * 14 12 2 16 16 C 1.53068 * 108.42768 * 292.47226 * 15 14 12 17 17 C 1.50173 * 109.89049 * 48.89775 * 16 15 14 18 18 O 1.21285 * 118.24772 * 162.44211 * 17 16 15 19 19 N 1.33352 * 123.51082 * 342.41800 * 17 16 15 20 20 H 1.08997 * 109.47202 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.47190 * 300.00123 * 1 2 3 22 22 H 1.09004 * 109.47255 * 59.99859 * 1 2 3 23 23 H 0.97001 * 119.99922 * 180.02562 * 7 6 4 24 24 H 1.08997 * 109.60531 * 290.82159 * 14 12 2 25 25 H 1.09000 * 109.60462 * 51.31507 * 14 12 2 26 26 H 1.08993 * 109.67600 * 172.73232 * 15 14 12 27 27 H 1.09005 * 109.69702 * 52.22113 * 15 14 12 28 28 H 1.08995 * 109.39725 * 288.76724 * 16 15 14 29 29 H 1.09003 * 109.39843 * 169.02246 * 16 15 14 30 30 H 0.96998 * 117.95211 * 182.20367 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6992 -0.2394 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3214 -1.1204 4.0079 9 1 3.8064 -1.1209 4.0081 10 1 1.8259 -0.4207 5.2204 11 1 1.8259 -2.5203 4.0076 12 6 2.0400 -0.7212 -1.2493 13 1 1.6812 -1.7503 -1.2390 14 6 1.5069 -0.0124 -2.4951 15 6 2.2001 -0.6015 -3.7296 16 6 3.6797 -0.2118 -3.6857 17 6 4.2478 -0.5144 -2.3289 18 8 5.4534 -0.5756 -2.2120 19 7 3.4976 -0.7189 -1.2455 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3634 0.5139 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 0.7095 1.1617 3.4844 24 1 0.4307 -0.1671 -2.5714 25 1 1.7218 1.0541 -2.4292 26 1 1.7418 -0.2012 -4.6338 27 1 2.1063 -1.6874 -3.7205 28 1 3.7795 0.8541 -3.8906 29 1 4.2256 -0.7771 -4.4410 30 1 3.9501 -0.8764 -0.4022 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261218787.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:04 Heat of formation + Delta-G solvation = -82.474429 kcal Electronic energy + Delta-G solvation = -12911.102512 eV Core-core repulsion = 10704.343662 eV Total energy + Delta-G solvation = -2206.758850 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.18112 -38.20370 -35.59195 -33.78111 -32.70907 -29.26050 -27.23536 -25.35371 -23.52578 -21.53136 -19.89872 -18.50215 -17.97242 -16.94604 -16.59665 -16.12894 -15.17610 -14.97168 -14.54204 -14.41769 -14.00006 -13.38979 -13.04028 -12.80914 -12.64186 -12.39235 -12.26643 -12.07826 -11.76158 -11.69089 -11.39439 -10.89263 -10.53696 -10.43925 -9.78934 -8.10488 -6.24037 1.40762 1.42239 1.48487 1.74056 2.41425 2.57968 3.19540 3.77970 3.98677 4.01478 4.10728 4.52584 4.63709 4.73806 4.91070 4.96061 5.03624 5.13371 5.19855 5.24188 5.33657 5.45753 5.60374 5.85759 6.00277 6.09704 6.33932 6.70208 6.87250 7.33056 7.44860 8.93120 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.043870 B = 0.011161 C = 0.009391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.089943 B = 2508.022165 C = 2980.749865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.034 3.966 3 H -0.002 1.002 4 C -0.533 4.533 5 H 0.053 0.947 6 C 0.018 3.982 7 N -0.912 5.912 8 Si 0.946 3.054 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.270 1.270 12 C 0.148 3.852 13 H 0.066 0.934 14 C -0.129 4.129 15 C -0.113 4.113 16 C -0.127 4.127 17 C 0.502 3.498 18 O -0.628 6.628 19 N -0.700 5.700 20 H 0.033 0.967 21 H 0.052 0.948 22 H 0.045 0.955 23 H 0.260 0.740 24 H 0.098 0.902 25 H 0.062 0.938 26 H 0.107 0.893 27 H 0.072 0.928 28 H 0.109 0.891 29 H 0.111 0.889 30 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.870 -2.233 -10.860 11.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.015 3.985 3 H 0.016 0.984 4 C -0.571 4.571 5 H 0.072 0.928 6 C -0.182 4.182 7 N -0.552 5.552 8 Si 0.772 3.228 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.196 1.196 12 C 0.044 3.956 13 H 0.084 0.916 14 C -0.167 4.167 15 C -0.150 4.150 16 C -0.166 4.166 17 C 0.291 3.709 18 O -0.514 6.514 19 N -0.347 5.347 20 H 0.052 0.948 21 H 0.070 0.930 22 H 0.064 0.936 23 H 0.069 0.931 24 H 0.117 0.883 25 H 0.081 0.919 26 H 0.125 0.875 27 H 0.091 0.909 28 H 0.127 0.873 29 H 0.129 0.871 30 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -1.503 -2.117 -10.877 11.183 hybrid contribution 0.528 -0.288 1.849 1.944 sum -0.975 -2.404 -9.029 9.394 Atomic orbital electron populations 1.21648 0.96901 0.99470 1.00515 1.18961 0.93864 0.94284 0.91371 0.98425 1.21450 1.31318 1.12417 0.91941 0.92833 1.25627 0.95299 0.95593 1.01656 1.69994 1.37443 1.23848 1.23884 0.85803 0.78558 0.79008 0.79418 1.20329 1.21202 1.19551 1.21176 0.77897 0.99649 0.96862 0.91634 1.22002 1.01911 0.99874 0.92925 1.21674 0.92659 1.01754 0.98935 1.21667 0.98238 1.04976 0.91743 1.21071 0.86190 0.75217 0.88425 1.90664 1.17261 1.56087 1.87363 1.45922 1.08618 1.69379 1.10830 0.94836 0.92958 0.93637 0.93082 0.88335 0.91894 0.87466 0.90886 0.87281 0.87063 0.77348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.47 8.60 71.98 0.62 -4.85 16 2 C 0.03 1.57 2.06 -11.54 -0.02 1.54 16 3 H 0.00 -0.13 8.14 -2.38 -0.02 -0.15 16 4 C -0.53 -27.65 7.75 25.60 0.20 -27.45 16 5 H 0.05 2.73 7.19 -2.91 -0.02 2.71 16 6 C 0.02 0.94 5.30 84.65 0.45 1.39 16 7 N -0.91 -51.17 11.32 21.45 0.24 -50.93 16 8 Si 0.95 43.03 29.54 68.60 2.03 45.06 16 9 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 10 H -0.29 -12.90 7.11 99.48 0.71 -12.20 16 11 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 12 C 0.15 5.40 2.61 45.11 0.12 5.52 16 13 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 14 C -0.13 -3.53 4.62 30.68 0.14 -3.39 16 15 C -0.11 -2.35 6.03 30.73 0.19 -2.17 16 16 C -0.13 -3.17 6.03 29.71 0.18 -2.99 16 17 C 0.50 18.57 7.71 87.71 0.68 19.25 16 18 O -0.63 -28.35 17.78 -3.04 -0.05 -28.41 16 19 N -0.70 -27.37 5.11 -446.64 -2.28 -29.65 16 20 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 21 H 0.05 2.61 6.07 -2.39 -0.01 2.60 16 22 H 0.04 1.62 6.61 -2.39 -0.02 1.61 16 23 H 0.26 14.05 8.31 -92.71 -0.77 13.28 16 24 H 0.10 2.37 6.93 -2.39 -0.02 2.36 16 25 H 0.06 1.81 8.11 -2.39 -0.02 1.79 16 26 H 0.11 1.54 8.14 -2.39 -0.02 1.53 16 27 H 0.07 1.48 8.13 -2.38 -0.02 1.46 16 28 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16 29 H 0.11 2.39 8.14 -2.39 -0.02 2.37 16 30 H 0.39 17.10 7.32 -92.71 -0.68 16.42 16 Total: -1.00 -63.24 243.32 2.92 -60.32 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: 0.45 Total: 16.77 kcal Atomic # 6 Polarization: -15.70 SS G_CDS: 2.54 Total: -13.16 kcal Atomic # 7 Polarization: -78.54 SS G_CDS: -2.04 Total: -80.58 kcal Atomic # 8 Polarization: -28.35 SS G_CDS: -0.05 Total: -28.41 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -63.24 2.92 -60.32 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261218787.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.156 kcal (2) G-P(sol) polarization free energy of solvation -63.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds