Wall clock time and date at job start Mon Mar 30 2020 02:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47453 * 2 1 4 4 C 1.50706 * 109.47260 * 240.00066 * 2 1 3 5 5 H 1.08002 * 120.00030 * 240.00250 * 4 2 1 6 6 C 1.37875 * 119.99852 * 60.00127 * 4 2 1 7 7 N 1.31510 * 120.00068 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99832 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47397 * 359.97438 * 8 6 4 10 10 H 1.48492 * 109.47269 * 120.00073 * 8 6 4 11 11 H 1.48504 * 109.47022 * 240.00154 * 8 6 4 12 12 C 1.53001 * 109.47156 * 120.00477 * 2 1 3 13 13 H 1.08997 * 109.30103 * 60.41530 * 12 2 1 14 14 C 1.52938 * 109.12272 * 300.91782 * 12 2 1 15 15 C 1.53347 * 108.66261 * 189.02038 * 14 12 2 16 16 C 1.53076 * 108.42242 * 67.54452 * 15 14 12 17 17 C 1.50171 * 109.89054 * 311.09644 * 16 15 14 18 18 O 1.21276 * 118.24494 * 197.60292 * 17 16 15 19 19 N 1.33354 * 123.50876 * 17.58999 * 17 16 15 20 20 H 1.08995 * 109.47243 * 300.00147 * 1 2 3 21 21 H 1.09004 * 109.46860 * 59.99751 * 1 2 3 22 22 H 1.09007 * 109.47204 * 179.97438 * 1 2 3 23 23 H 0.96997 * 120.00183 * 179.97438 * 7 6 4 24 24 H 1.08998 * 109.60148 * 69.27377 * 14 12 2 25 25 H 1.08998 * 109.62290 * 308.78043 * 14 12 2 26 26 H 1.08991 * 109.67511 * 307.81375 * 15 14 12 27 27 H 1.09004 * 109.67114 * 187.27343 * 15 14 12 28 28 H 1.09004 * 109.39818 * 71.22899 * 16 15 14 29 29 H 1.09005 * 109.39698 * 190.97074 * 16 15 14 30 30 H 0.96998 * 117.94291 * 177.77768 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3214 -1.1203 -4.0079 9 1 3.1465 -2.2869 -3.6038 10 1 1.1662 -1.5865 -4.8161 11 1 3.1467 -0.1873 -4.8164 12 6 2.0400 -0.7214 1.2492 13 1 1.6812 -1.7506 1.2426 14 6 1.5070 -0.0078 2.4925 15 6 2.1998 -0.5931 3.7290 16 6 3.6796 -0.2039 3.6839 17 6 4.2477 -0.5113 2.3282 18 8 5.4532 -0.5741 2.2119 19 7 3.4975 -0.7192 1.2455 20 1 -0.3633 0.5138 0.8899 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 0.7088 1.1613 -3.4843 24 1 0.4307 -0.1617 2.5692 25 1 1.7222 1.0585 2.4231 26 1 2.1056 -1.6789 3.7229 27 1 1.7416 -0.1894 4.6319 28 1 3.7798 0.8627 3.8853 29 1 4.2252 -0.7669 4.4413 30 1 3.9502 -0.8794 0.4028 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261218788.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:07 Heat of formation + Delta-G solvation = -63.320606 kcal Electronic energy + Delta-G solvation = -12911.121599 eV Core-core repulsion = 10705.193322 eV Total energy + Delta-G solvation = -2205.928278 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.70913 -36.60225 -33.91948 -32.32720 -30.92539 -27.80298 -25.31835 -23.89477 -22.16219 -19.78465 -18.59458 -16.75492 -16.24036 -15.40771 -14.91051 -14.53711 -13.61428 -13.56224 -13.27461 -12.90188 -12.38980 -11.64964 -11.42088 -11.19902 -10.98588 -10.68702 -10.67396 -10.54514 -10.37525 -10.10754 -9.70717 -9.12832 -8.86869 -8.46376 -8.15899 -6.08472 -4.16774 3.21931 3.25319 3.34240 3.37842 4.05402 4.36503 5.03272 5.09494 5.10900 5.24402 5.39457 5.74994 5.86607 5.99150 6.05749 6.14023 6.29965 6.50863 6.60918 6.81345 6.99469 7.12714 7.53942 7.60373 7.84235 7.95128 8.20957 8.30909 8.85587 8.88195 9.49816 10.96898 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.043873 B = 0.011165 C = 0.009393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.056577 B = 2507.300150 C = 2980.173314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.035 3.965 3 H 0.032 0.968 4 C -0.521 4.521 5 H 0.057 0.943 6 C 0.065 3.935 7 N -0.886 5.886 8 Si 0.891 3.109 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.143 3.857 13 H 0.063 0.937 14 C -0.133 4.133 15 C -0.124 4.124 16 C -0.133 4.133 17 C 0.510 3.490 18 O -0.586 6.586 19 N -0.693 5.693 20 H 0.013 0.987 21 H 0.084 0.916 22 H 0.027 0.973 23 H 0.261 0.739 24 H 0.081 0.919 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.271 -1.667 9.116 9.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.016 3.984 3 H 0.050 0.950 4 C -0.560 4.560 5 H 0.075 0.925 6 C -0.137 4.137 7 N -0.524 5.524 8 Si 0.718 3.282 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.210 1.210 12 C 0.038 3.962 13 H 0.081 0.919 14 C -0.170 4.170 15 C -0.162 4.162 16 C -0.173 4.173 17 C 0.296 3.704 18 O -0.468 6.468 19 N -0.343 5.343 20 H 0.032 0.968 21 H 0.103 0.897 22 H 0.046 0.954 23 H 0.070 0.930 24 H 0.099 0.901 25 H 0.087 0.913 26 H 0.085 0.915 27 H 0.087 0.913 28 H 0.111 0.889 29 H 0.109 0.891 30 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -0.874 -1.551 9.120 9.292 hybrid contribution 0.307 -0.454 -1.293 1.404 sum -0.567 -2.005 7.827 8.100 Atomic orbital electron populations 1.21814 0.97842 0.99245 1.00573 1.19028 0.93094 0.96096 0.90189 0.94984 1.21137 1.31720 1.12493 0.90601 0.92508 1.24937 0.94853 0.94844 0.99056 1.69882 1.36374 1.22747 1.23403 0.86556 0.78666 0.79787 0.83142 1.19713 1.21022 1.21003 1.21257 0.78476 0.99574 0.96851 0.91901 1.22020 1.00776 1.00573 0.93673 1.21696 0.94236 1.01322 0.98918 1.21599 0.97090 1.03626 0.95010 1.20101 0.86736 0.76613 0.86941 1.90687 1.15304 1.54312 1.86498 1.45759 1.08136 1.69376 1.11034 0.96803 0.89699 0.95361 0.92951 0.90067 0.91322 0.91538 0.91304 0.88876 0.89089 0.75588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 8.60 37.16 0.32 -2.67 16 2 C 0.03 0.80 2.06 -91.77 -0.19 0.61 16 3 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 4 C -0.52 -13.37 7.75 -34.44 -0.27 -13.64 16 5 H 0.06 1.44 7.19 -52.49 -0.38 1.06 16 6 C 0.07 1.73 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -24.39 11.32 55.43 0.63 -23.76 16 8 Si 0.89 20.78 29.54 -169.99 -5.02 15.75 16 9 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 C 0.14 2.69 2.62 -68.37 -0.18 2.51 16 13 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 14 C -0.13 -2.02 4.62 -26.58 -0.12 -2.14 16 15 C -0.12 -1.57 6.03 -26.51 -0.16 -1.73 16 16 C -0.13 -1.89 6.03 -28.10 -0.17 -2.06 16 17 C 0.51 9.69 7.71 -11.87 -0.09 9.60 16 18 O -0.59 -13.23 17.78 5.56 0.10 -13.13 16 19 N -0.69 -13.64 5.11 -54.85 -0.28 -13.92 16 20 H 0.01 0.25 6.60 -51.93 -0.34 -0.09 16 21 H 0.08 2.12 6.07 -51.93 -0.32 1.80 16 22 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 23 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 24 H 0.08 1.15 6.92 -51.93 -0.36 0.79 16 25 H 0.07 1.08 8.10 -51.93 -0.42 0.66 16 26 H 0.07 0.83 8.13 -51.93 -0.42 0.41 16 27 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 30 H 0.41 8.67 7.32 -40.82 -0.30 8.37 16 LS Contribution 243.29 15.07 3.67 3.67 Total: -1.00 -28.93 243.29 -6.07 -35.00 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -4.21 Total: 4.29 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: -0.95 Total: -7.89 kcal Atomic # 7 Polarization: -38.03 SS G_CDS: 0.35 Total: -37.68 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: 0.10 Total: -13.13 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -28.93 -6.07 -35.00 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261218788.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.324 kcal (2) G-P(sol) polarization free energy of solvation -28.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds