Wall clock time and date at job start Mon Mar 30 2020 02:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47453 * 2 1 4 4 C 1.50706 * 109.47260 * 240.00066 * 2 1 3 5 5 H 1.08002 * 120.00030 * 240.00250 * 4 2 1 6 6 C 1.37875 * 119.99852 * 60.00127 * 4 2 1 7 7 N 1.31510 * 120.00068 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99832 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47397 * 359.97438 * 8 6 4 10 10 H 1.48492 * 109.47269 * 120.00073 * 8 6 4 11 11 H 1.48504 * 109.47022 * 240.00154 * 8 6 4 12 12 C 1.53001 * 109.47156 * 120.00477 * 2 1 3 13 13 H 1.08997 * 109.30103 * 60.41530 * 12 2 1 14 14 C 1.52938 * 109.12272 * 300.91782 * 12 2 1 15 15 C 1.53347 * 108.66261 * 189.02038 * 14 12 2 16 16 C 1.53076 * 108.42242 * 67.54452 * 15 14 12 17 17 C 1.50171 * 109.89054 * 311.09644 * 16 15 14 18 18 O 1.21276 * 118.24494 * 197.60292 * 17 16 15 19 19 N 1.33354 * 123.50876 * 17.58999 * 17 16 15 20 20 H 1.08995 * 109.47243 * 300.00147 * 1 2 3 21 21 H 1.09004 * 109.46860 * 59.99751 * 1 2 3 22 22 H 1.09007 * 109.47204 * 179.97438 * 1 2 3 23 23 H 0.96997 * 120.00183 * 179.97438 * 7 6 4 24 24 H 1.08998 * 109.60148 * 69.27377 * 14 12 2 25 25 H 1.08998 * 109.62290 * 308.78043 * 14 12 2 26 26 H 1.08991 * 109.67511 * 307.81375 * 15 14 12 27 27 H 1.09004 * 109.67114 * 187.27343 * 15 14 12 28 28 H 1.09004 * 109.39818 * 71.22899 * 16 15 14 29 29 H 1.09005 * 109.39698 * 190.97074 * 16 15 14 30 30 H 0.96998 * 117.94291 * 177.77768 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3214 -1.1203 -4.0079 9 1 3.1465 -2.2869 -3.6038 10 1 1.1662 -1.5865 -4.8161 11 1 3.1467 -0.1873 -4.8164 12 6 2.0400 -0.7214 1.2492 13 1 1.6812 -1.7506 1.2426 14 6 1.5070 -0.0078 2.4925 15 6 2.1998 -0.5931 3.7290 16 6 3.6796 -0.2039 3.6839 17 6 4.2477 -0.5113 2.3282 18 8 5.4532 -0.5741 2.2119 19 7 3.4975 -0.7192 1.2455 20 1 -0.3633 0.5138 0.8899 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 0.7088 1.1613 -3.4843 24 1 0.4307 -0.1617 2.5692 25 1 1.7222 1.0585 2.4231 26 1 2.1056 -1.6789 3.7229 27 1 1.7416 -0.1894 4.6319 28 1 3.7798 0.8627 3.8853 29 1 4.2252 -0.7669 4.4413 30 1 3.9502 -0.8794 0.4028 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261218788.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:06 Heat of formation + Delta-G solvation = -82.528413 kcal Electronic energy + Delta-G solvation = -12911.954512 eV Core-core repulsion = 10705.193322 eV Total energy + Delta-G solvation = -2206.761191 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.18167 -38.20566 -35.59188 -33.78029 -32.71097 -29.25779 -27.23867 -25.35373 -23.52311 -21.53472 -19.89892 -18.50641 -17.97386 -16.94613 -16.59506 -16.12700 -15.18077 -14.97246 -14.53793 -14.41685 -14.00854 -13.40071 -13.04123 -12.82536 -12.64661 -12.37688 -12.24124 -12.08146 -11.76192 -11.69411 -11.39762 -10.87811 -10.53887 -10.44400 -9.79004 -8.10922 -6.24247 1.37796 1.42062 1.50999 1.74203 2.41122 2.58063 3.19295 3.78076 3.98923 4.01522 4.10637 4.52736 4.63760 4.73701 4.91162 4.96072 5.03669 5.13360 5.19956 5.24249 5.33731 5.45866 5.60729 5.85851 6.00342 6.09740 6.33948 6.70292 6.87434 7.33172 7.44775 8.93067 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.043873 B = 0.011165 C = 0.009393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.056577 B = 2507.300150 C = 2980.173314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.034 3.966 3 H -0.002 1.002 4 C -0.531 4.531 5 H 0.053 0.947 6 C 0.017 3.983 7 N -0.913 5.913 8 Si 0.946 3.054 9 H -0.269 1.269 10 H -0.280 1.280 11 H -0.287 1.287 12 C 0.148 3.852 13 H 0.066 0.934 14 C -0.130 4.130 15 C -0.113 4.113 16 C -0.127 4.127 17 C 0.502 3.498 18 O -0.628 6.628 19 N -0.700 5.700 20 H 0.045 0.955 21 H 0.051 0.949 22 H 0.033 0.967 23 H 0.260 0.740 24 H 0.098 0.902 25 H 0.062 0.938 26 H 0.072 0.928 27 H 0.107 0.893 28 H 0.109 0.891 29 H 0.111 0.889 30 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.860 -2.223 10.887 11.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.015 3.985 3 H 0.016 0.984 4 C -0.569 4.569 5 H 0.072 0.928 6 C -0.182 4.182 7 N -0.552 5.552 8 Si 0.773 3.227 9 H -0.194 1.194 10 H -0.206 1.206 11 H -0.213 1.213 12 C 0.044 3.956 13 H 0.084 0.916 14 C -0.167 4.167 15 C -0.150 4.150 16 C -0.166 4.166 17 C 0.291 3.709 18 O -0.514 6.514 19 N -0.348 5.348 20 H 0.064 0.936 21 H 0.070 0.930 22 H 0.052 0.948 23 H 0.069 0.931 24 H 0.117 0.883 25 H 0.081 0.919 26 H 0.091 0.909 27 H 0.125 0.875 28 H 0.127 0.873 29 H 0.129 0.871 30 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -1.487 -2.114 10.910 11.212 hybrid contribution 0.514 -0.271 -1.862 1.951 sum -0.973 -2.385 9.047 9.407 Atomic orbital electron populations 1.21650 0.96892 0.99486 1.00517 1.18974 0.93874 0.94298 0.91398 0.98390 1.21509 1.31137 1.12321 0.91917 0.92830 1.25626 0.95327 0.95605 1.01669 1.70003 1.37517 1.23934 1.23755 0.85688 0.78129 0.78732 0.80183 1.19386 1.20585 1.21290 1.21180 0.77901 0.99623 0.96876 0.91599 1.22011 1.01914 0.99854 0.92947 1.21677 0.92659 1.01772 0.98919 1.21671 0.98239 1.04952 0.91774 1.21065 0.86189 0.75240 0.88398 1.90661 1.17263 1.56118 1.87318 1.45921 1.08616 1.69313 1.10904 0.93621 0.92971 0.94817 0.93102 0.88336 0.91898 0.90887 0.87472 0.87284 0.87069 0.77345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.47 8.60 71.98 0.62 -4.85 16 2 C 0.03 1.54 2.06 -11.54 -0.02 1.51 16 3 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 4 C -0.53 -27.51 7.75 25.60 0.20 -27.31 16 5 H 0.05 2.75 7.19 -2.91 -0.02 2.73 16 6 C 0.02 0.91 5.30 84.65 0.45 1.36 16 7 N -0.91 -51.15 11.32 21.45 0.24 -50.91 16 8 Si 0.95 43.09 29.54 68.60 2.03 45.12 16 9 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 10 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 11 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 12 C 0.15 5.40 2.62 45.11 0.12 5.52 16 13 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 14 C -0.13 -3.54 4.62 30.69 0.14 -3.39 16 15 C -0.11 -2.35 6.03 30.74 0.19 -2.17 16 16 C -0.13 -3.17 6.03 29.71 0.18 -2.99 16 17 C 0.50 18.56 7.71 87.71 0.68 19.23 16 18 O -0.63 -28.32 17.78 -3.02 -0.05 -28.37 16 19 N -0.70 -27.35 5.11 -446.63 -2.28 -29.63 16 20 H 0.04 1.63 6.60 -2.39 -0.02 1.61 16 21 H 0.05 2.60 6.07 -2.38 -0.01 2.59 16 22 H 0.03 1.37 8.14 -2.38 -0.02 1.35 16 23 H 0.26 13.95 8.31 -92.71 -0.77 13.18 16 24 H 0.10 2.37 6.92 -2.39 -0.02 2.36 16 25 H 0.06 1.81 8.10 -2.39 -0.02 1.79 16 26 H 0.07 1.48 8.13 -2.39 -0.02 1.46 16 27 H 0.11 1.54 8.14 -2.39 -0.02 1.53 16 28 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16 29 H 0.11 2.39 8.14 -2.38 -0.02 2.37 16 30 H 0.39 17.08 7.32 -92.71 -0.68 16.40 16 Total: -1.00 -63.29 243.29 2.92 -60.37 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: 0.45 Total: 16.53 kcal Atomic # 6 Polarization: -15.65 SS G_CDS: 2.54 Total: -13.10 kcal Atomic # 7 Polarization: -78.50 SS G_CDS: -2.04 Total: -80.54 kcal Atomic # 8 Polarization: -28.32 SS G_CDS: -0.05 Total: -28.37 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Total: -63.29 2.92 -60.37 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261218788.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.163 kcal (2) G-P(sol) polarization free energy of solvation -63.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds