Wall clock time and date at job start Mon Mar 30 2020 02:30:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47506 * 2 1 4 4 C 1.50702 * 109.47313 * 120.00591 * 2 1 3 5 5 H 1.07996 * 120.00111 * 119.99850 * 4 2 1 6 6 C 1.37878 * 119.99475 * 299.99824 * 4 2 1 7 7 N 1.31507 * 120.00325 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99804 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47318 * 59.99833 * 8 6 4 10 10 H 1.48493 * 109.47564 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47275 * 299.99734 * 8 6 4 12 12 C 1.53004 * 109.46954 * 240.00406 * 2 1 3 13 13 H 1.08997 * 109.12761 * 185.52288 * 12 2 1 14 14 C 1.52920 * 109.30244 * 66.03400 * 12 2 1 15 15 C 1.53342 * 108.67545 * 188.93564 * 14 12 2 16 16 C 1.53072 * 108.42422 * 67.53479 * 15 14 12 17 17 C 1.50176 * 109.88928 * 311.09962 * 16 15 14 18 18 O 1.21279 * 118.24328 * 197.58185 * 17 16 15 19 19 N 1.33356 * 123.51112 * 17.57799 * 17 16 15 20 20 H 1.09001 * 109.47294 * 59.99494 * 1 2 3 21 21 H 1.08998 * 109.47506 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.46963 * 300.00017 * 1 2 3 23 23 H 0.97003 * 120.00283 * 180.02562 * 7 6 4 24 24 H 1.08997 * 109.60123 * 308.69771 * 14 12 2 25 25 H 1.08999 * 109.60150 * 69.17885 * 14 12 2 26 26 H 1.08998 * 109.67312 * 187.26485 * 15 14 12 27 27 H 1.08999 * 109.67292 * 307.80245 * 15 14 12 28 28 H 1.08996 * 109.40021 * 71.22824 * 16 15 14 29 29 H 1.08998 * 109.39810 * 190.97047 * 16 15 14 30 30 H 0.97004 * 117.94832 * 178.06277 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 0.9436 0.8300 2.6034 8 14 2.3225 -1.1197 4.0078 9 1 3.8075 -1.1192 4.0076 10 1 1.8280 -0.4196 5.2204 11 1 1.8280 -2.5200 4.0081 12 6 2.0399 -0.7212 -1.2493 13 1 3.1254 -0.8046 -1.1955 14 6 1.6557 0.0850 -2.4906 15 6 1.9710 -0.7515 -3.7365 16 6 1.0221 -1.9523 -3.7658 17 6 1.0156 -2.6312 -2.4263 18 8 0.5864 -3.7635 -2.3588 19 7 1.4566 -2.0557 -1.3071 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 0.7096 1.1616 3.4845 24 1 0.5902 0.3130 -2.4632 25 1 2.2297 1.0113 -2.5172 26 1 1.8250 -0.1465 -4.6313 27 1 3.0028 -1.1002 -3.6929 28 1 0.0145 -1.6117 -4.0040 29 1 1.3542 -2.6576 -4.5277 30 1 1.3884 -2.5582 -0.4801 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261218789.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:09 Heat of formation + Delta-G solvation = -61.401859 kcal Electronic energy + Delta-G solvation = -13000.435538 eV Core-core repulsion = 10794.590463 eV Total energy + Delta-G solvation = -2205.845075 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.75152 -36.60085 -33.91341 -32.28774 -30.66027 -27.91458 -25.36566 -23.98925 -22.15153 -19.95039 -18.43336 -16.46208 -16.28282 -15.29869 -15.01512 -14.50050 -13.75936 -13.53442 -13.24513 -12.77528 -12.52427 -11.95248 -11.31152 -11.19023 -10.95350 -10.74820 -10.62870 -10.41300 -10.21385 -10.15005 -9.69285 -9.09988 -8.87623 -8.43294 -8.16159 -6.07657 -4.16074 3.23092 3.28085 3.33083 3.36109 4.06030 4.36834 5.03753 5.09791 5.11732 5.24819 5.39766 5.75439 5.87572 5.99278 6.07193 6.14123 6.31362 6.48769 6.60935 6.84028 7.04780 7.26422 7.49316 7.62142 7.82898 8.01225 8.18895 8.32970 8.86359 8.88437 9.50346 10.97638 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.048949 B = 0.010765 C = 0.009779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.881155 B = 2600.323582 C = 2862.731381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.035 3.965 3 H 0.039 0.961 4 C -0.523 4.523 5 H 0.056 0.944 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.891 3.109 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.276 1.276 12 C 0.143 3.857 13 H 0.063 0.937 14 C -0.136 4.136 15 C -0.123 4.123 16 C -0.133 4.133 17 C 0.510 3.490 18 O -0.586 6.586 19 N -0.689 5.689 20 H 0.009 0.991 21 H 0.027 0.973 22 H 0.081 0.919 23 H 0.262 0.738 24 H 0.074 0.926 25 H 0.077 0.923 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.093 0.907 29 H 0.090 0.910 30 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.718 0.264 -9.008 9.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.016 3.984 3 H 0.057 0.943 4 C -0.561 4.561 5 H 0.074 0.926 6 C -0.137 4.137 7 N -0.524 5.524 8 Si 0.719 3.281 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.202 1.202 12 C 0.038 3.962 13 H 0.081 0.919 14 C -0.173 4.173 15 C -0.161 4.161 16 C -0.173 4.173 17 C 0.297 3.703 18 O -0.469 6.469 19 N -0.339 5.339 20 H 0.028 0.972 21 H 0.046 0.954 22 H 0.100 0.900 23 H 0.072 0.928 24 H 0.092 0.908 25 H 0.095 0.905 26 H 0.087 0.913 27 H 0.084 0.916 28 H 0.111 0.889 29 H 0.109 0.891 30 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 1.448 -0.036 -9.023 9.139 hybrid contribution 0.291 -0.487 1.274 1.394 sum 1.739 -0.523 -7.749 7.959 Atomic orbital electron populations 1.21809 0.98321 0.99254 1.00012 1.19014 0.93270 0.95962 0.90153 0.94283 1.21076 1.31711 1.12719 0.90600 0.92620 1.24935 0.94813 0.94873 0.99030 1.69865 1.36248 1.22690 1.23605 0.86670 0.79203 0.79889 0.82343 1.20261 1.21307 1.20197 1.21250 0.96682 0.81491 0.96744 0.91935 1.22034 1.02927 0.98728 0.93653 1.21678 0.99324 0.96225 0.98851 1.21588 1.02091 0.98386 0.95221 1.20079 0.77386 0.86179 0.86699 1.90688 1.49346 1.19597 1.87246 1.45681 1.60183 1.18009 1.10010 0.97245 0.95369 0.89997 0.92845 0.90761 0.90466 0.91341 0.91565 0.88920 0.89122 0.75722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 8.54 37.16 0.32 -2.81 16 2 C 0.03 0.79 2.10 -91.77 -0.19 0.60 16 3 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 4 C -0.52 -13.38 7.80 -34.44 -0.27 -13.65 16 5 H 0.06 1.40 7.51 -52.49 -0.39 1.01 16 6 C 0.07 1.74 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -24.37 11.32 55.43 0.63 -23.75 16 8 Si 0.89 20.73 29.54 -169.99 -5.02 15.71 16 9 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 10 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 C 0.14 2.67 2.70 -68.37 -0.18 2.48 16 13 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 14 C -0.14 -2.05 5.23 -26.60 -0.14 -2.19 16 15 C -0.12 -1.56 6.03 -26.52 -0.16 -1.72 16 16 C -0.13 -1.89 6.03 -28.10 -0.17 -2.05 16 17 C 0.51 9.64 7.71 -11.87 -0.09 9.55 16 18 O -0.59 -13.19 17.78 5.56 0.10 -13.09 16 19 N -0.69 -13.39 4.13 -54.85 -0.23 -13.62 16 20 H 0.01 0.18 6.42 -51.93 -0.33 -0.15 16 21 H 0.03 0.65 7.46 -51.93 -0.39 0.26 16 22 H 0.08 2.11 6.07 -51.93 -0.32 1.79 16 23 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 24 H 0.07 1.17 6.22 -51.93 -0.32 0.85 16 25 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 26 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.07 0.82 8.13 -51.93 -0.42 0.40 16 28 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.41 8.59 7.72 -40.82 -0.32 8.27 16 LS Contribution 242.23 15.07 3.65 3.65 Total: -1.00 -28.78 242.23 -6.02 -34.80 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -4.16 Total: 4.43 kcal Atomic # 6 Polarization: -7.16 SS G_CDS: -0.98 Total: -8.14 kcal Atomic # 7 Polarization: -37.76 SS G_CDS: 0.40 Total: -37.36 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: 0.10 Total: -13.09 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -28.78 -6.02 -34.80 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261218789.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.603 kcal (2) G-P(sol) polarization free energy of solvation -28.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds