Wall clock time and date at job start Mon Mar 30 2020 02:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47506 * 2 1 4 4 C 1.50702 * 109.47313 * 120.00591 * 2 1 3 5 5 H 1.07996 * 120.00111 * 119.99850 * 4 2 1 6 6 C 1.37878 * 119.99475 * 299.99824 * 4 2 1 7 7 N 1.31507 * 120.00325 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99804 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47318 * 59.99833 * 8 6 4 10 10 H 1.48493 * 109.47564 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47275 * 299.99734 * 8 6 4 12 12 C 1.53004 * 109.46954 * 240.00406 * 2 1 3 13 13 H 1.08997 * 109.12761 * 185.52288 * 12 2 1 14 14 C 1.52920 * 109.30244 * 66.03400 * 12 2 1 15 15 C 1.53342 * 108.67545 * 188.93564 * 14 12 2 16 16 C 1.53072 * 108.42422 * 67.53479 * 15 14 12 17 17 C 1.50176 * 109.88928 * 311.09962 * 16 15 14 18 18 O 1.21279 * 118.24328 * 197.58185 * 17 16 15 19 19 N 1.33356 * 123.51112 * 17.57799 * 17 16 15 20 20 H 1.09001 * 109.47294 * 59.99494 * 1 2 3 21 21 H 1.08998 * 109.47506 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.46963 * 300.00017 * 1 2 3 23 23 H 0.97003 * 120.00283 * 180.02562 * 7 6 4 24 24 H 1.08997 * 109.60123 * 308.69771 * 14 12 2 25 25 H 1.08999 * 109.60150 * 69.17885 * 14 12 2 26 26 H 1.08998 * 109.67312 * 187.26485 * 15 14 12 27 27 H 1.08999 * 109.67292 * 307.80245 * 15 14 12 28 28 H 1.08996 * 109.40021 * 71.22824 * 16 15 14 29 29 H 1.08998 * 109.39810 * 190.97047 * 16 15 14 30 30 H 0.97004 * 117.94832 * 178.06277 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 0.9436 0.8300 2.6034 8 14 2.3225 -1.1197 4.0078 9 1 3.8075 -1.1192 4.0076 10 1 1.8280 -0.4196 5.2204 11 1 1.8280 -2.5200 4.0081 12 6 2.0399 -0.7212 -1.2493 13 1 3.1254 -0.8046 -1.1955 14 6 1.6557 0.0850 -2.4906 15 6 1.9710 -0.7515 -3.7365 16 6 1.0221 -1.9523 -3.7658 17 6 1.0156 -2.6312 -2.4263 18 8 0.5864 -3.7635 -2.3588 19 7 1.4566 -2.0557 -1.3071 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 0.7096 1.1616 3.4845 24 1 0.5902 0.3130 -2.4632 25 1 2.2297 1.0113 -2.5172 26 1 1.8250 -0.1465 -4.6313 27 1 3.0028 -1.1002 -3.6929 28 1 0.0145 -1.6117 -4.0040 29 1 1.3542 -2.6576 -4.5277 30 1 1.3884 -2.5582 -0.4801 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261218789.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:08 Heat of formation + Delta-G solvation = -79.982076 kcal Electronic energy + Delta-G solvation = -13001.241236 eV Core-core repulsion = 10794.590463 eV Total energy + Delta-G solvation = -2206.650773 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.21697 -38.20463 -35.56167 -33.78831 -32.41102 -29.38054 -27.32625 -25.45290 -23.49685 -21.67882 -19.74709 -18.31752 -17.86731 -16.80497 -16.75797 -16.09341 -15.27519 -14.89570 -14.49934 -14.38588 -14.22608 -13.63258 -12.94624 -12.83603 -12.60714 -12.34239 -12.18713 -12.03298 -11.81293 -11.66072 -11.37408 -10.86100 -10.56465 -10.40479 -9.76356 -8.10043 -6.23170 1.41326 1.43072 1.49106 1.76845 2.42041 2.59522 3.20155 3.79844 4.00054 4.01827 4.11911 4.56881 4.61605 4.73550 4.89467 4.95670 5.01733 5.10711 5.15143 5.24590 5.38084 5.52914 5.58140 5.82802 5.95858 6.13024 6.32233 6.71859 6.87620 7.35534 7.45632 8.93753 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.048949 B = 0.010765 C = 0.009779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.881155 B = 2600.323582 C = 2862.731381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.033 3.967 3 H 0.022 0.978 4 C -0.532 4.532 5 H 0.054 0.946 6 C 0.018 3.982 7 N -0.913 5.913 8 Si 0.946 3.054 9 H -0.271 1.271 10 H -0.287 1.287 11 H -0.278 1.278 12 C 0.149 3.851 13 H 0.064 0.936 14 C -0.132 4.132 15 C -0.112 4.112 16 C -0.127 4.127 17 C 0.504 3.496 18 O -0.629 6.629 19 N -0.694 5.694 20 H 0.034 0.966 21 H 0.016 0.984 22 H 0.051 0.949 23 H 0.260 0.740 24 H 0.069 0.931 25 H 0.093 0.907 26 H 0.106 0.894 27 H 0.071 0.929 28 H 0.109 0.891 29 H 0.110 0.890 30 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.321 0.480 -10.684 10.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.014 3.986 3 H 0.040 0.960 4 C -0.570 4.570 5 H 0.072 0.928 6 C -0.182 4.182 7 N -0.552 5.552 8 Si 0.772 3.228 9 H -0.196 1.196 10 H -0.213 1.213 11 H -0.203 1.203 12 C 0.045 3.955 13 H 0.082 0.918 14 C -0.170 4.170 15 C -0.149 4.149 16 C -0.166 4.166 17 C 0.292 3.708 18 O -0.514 6.514 19 N -0.341 5.341 20 H 0.053 0.947 21 H 0.036 0.964 22 H 0.069 0.931 23 H 0.069 0.931 24 H 0.088 0.912 25 H 0.112 0.888 26 H 0.124 0.876 27 H 0.090 0.910 28 H 0.127 0.873 29 H 0.128 0.872 30 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 2.068 0.198 -10.717 10.917 hybrid contribution 0.099 -0.562 1.810 1.898 sum 2.167 -0.364 -8.907 9.174 Atomic orbital electron populations 1.21625 0.98491 0.98319 0.99716 1.18962 0.93035 0.95202 0.91409 0.96041 1.21461 1.31151 1.12549 0.91875 0.92811 1.25625 0.95277 0.95616 1.01660 1.69985 1.37411 1.23906 1.23880 0.85800 0.78902 0.78640 0.79416 1.19584 1.21279 1.20316 1.21150 0.96462 0.81162 0.96752 0.91821 1.22020 1.02831 0.99188 0.92953 1.21655 0.99097 0.95371 0.98807 1.21658 1.03686 0.99105 0.92169 1.21009 0.75934 0.85786 0.88032 1.90664 1.51102 1.21657 1.87982 1.45807 1.60233 1.18146 1.09912 0.94724 0.96447 0.93050 0.93092 0.91250 0.88827 0.87598 0.90978 0.87325 0.87172 0.77441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.68 8.54 71.98 0.61 -5.07 16 2 C 0.03 1.49 2.10 -11.54 -0.02 1.47 16 3 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 4 C -0.53 -27.41 7.80 25.60 0.20 -27.21 16 5 H 0.05 2.72 7.51 -2.91 -0.02 2.70 16 6 C 0.02 0.93 5.30 84.66 0.45 1.38 16 7 N -0.91 -50.96 11.32 21.45 0.24 -50.72 16 8 Si 0.95 42.85 29.54 68.60 2.03 44.87 16 9 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 10 H -0.29 -12.90 7.11 99.48 0.71 -12.20 16 11 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 12 C 0.15 5.37 2.70 45.11 0.12 5.49 16 13 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 14 C -0.13 -3.58 5.23 30.68 0.16 -3.42 16 15 C -0.11 -2.32 6.03 30.73 0.19 -2.14 16 16 C -0.13 -3.14 6.03 29.71 0.18 -2.96 16 17 C 0.50 18.31 7.71 87.71 0.68 18.99 16 18 O -0.63 -28.02 17.78 -3.03 -0.05 -28.08 16 19 N -0.69 -26.49 4.13 -446.63 -1.84 -28.33 16 20 H 0.03 1.37 6.42 -2.39 -0.02 1.35 16 21 H 0.02 0.79 7.46 -2.39 -0.02 0.77 16 22 H 0.05 2.68 6.07 -2.39 -0.01 2.66 16 23 H 0.26 14.00 8.31 -92.71 -0.77 13.23 16 24 H 0.07 1.96 6.22 -2.39 -0.01 1.95 16 25 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 26 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.07 1.46 8.13 -2.39 -0.02 1.44 16 28 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 29 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 30 H 0.39 16.75 7.72 -92.71 -0.72 16.03 16 Total: -1.00 -62.35 242.23 3.35 -59.00 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: 0.41 Total: 16.73 kcal Atomic # 6 Polarization: -16.03 SS G_CDS: 2.56 Total: -13.47 kcal Atomic # 7 Polarization: -77.45 SS G_CDS: -1.60 Total: -79.05 kcal Atomic # 8 Polarization: -28.02 SS G_CDS: -0.05 Total: -28.08 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.87 kcal Total: -62.35 3.35 -59.00 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261218789.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.983 kcal (2) G-P(sol) polarization free energy of solvation -62.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds