Wall clock time and date at job start Mon Mar 30 2020 02:30:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47461 * 2 1 4 4 C 1.50704 * 109.46990 * 120.00253 * 2 1 3 5 5 H 1.07990 * 120.00580 * 119.99665 * 4 2 1 6 6 C 1.37881 * 119.99626 * 299.99628 * 4 2 1 7 7 N 1.31514 * 119.99988 * 180.02562 * 6 4 2 8 8 Si 1.86803 * 120.00174 * 0.02562 * 6 4 2 9 9 H 1.48493 * 109.47228 * 89.99514 * 8 6 4 10 10 H 1.48502 * 109.47017 * 210.00317 * 8 6 4 11 11 H 1.48504 * 109.46814 * 329.99644 * 8 6 4 12 12 C 1.52999 * 109.47405 * 239.99750 * 2 1 3 13 13 H 1.08999 * 109.66881 * 299.50823 * 12 2 1 14 14 C 1.52888 * 109.74219 * 178.90666 * 12 2 1 15 15 C 1.52925 * 108.91041 * 172.66236 * 14 12 2 16 16 N 1.45752 * 110.32049 * 50.81248 * 15 14 12 17 17 C 1.33353 * 124.10987 * 341.02623 * 16 15 14 18 18 O 1.21275 * 118.24901 * 182.20137 * 17 16 15 19 19 C 1.50182 * 123.50537 * 2.22390 * 17 16 15 20 20 H 1.09005 * 109.47081 * 59.99929 * 1 2 3 21 21 H 1.09000 * 109.47461 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.47116 * 300.00522 * 1 2 3 23 23 H 0.97003 * 120.00012 * 180.02562 * 7 6 4 24 24 H 1.08995 * 109.35540 * 52.91570 * 14 12 2 25 25 H 1.08999 * 109.61594 * 292.56941 * 14 12 2 26 26 H 1.09002 * 109.30289 * 290.60164 * 15 14 12 27 27 H 1.08998 * 109.30095 * 171.01873 * 15 14 12 28 28 H 0.97006 * 117.94510 * 161.05141 * 16 15 14 29 29 H 1.09000 * 109.39729 * 102.54582 * 19 17 16 30 30 H 1.08998 * 109.39986 * 222.29134 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7105 1.2305 5 1 2.6531 -1.5885 1.1315 6 6 1.6991 -0.2394 2.4828 7 7 2.1379 -0.8590 3.5566 8 14 0.6247 1.2791 2.6541 9 1 -0.8028 0.8728 2.6997 10 1 0.9759 1.9952 3.9068 11 1 0.8471 2.1765 1.4920 12 6 2.0400 -0.7213 -1.2492 13 1 1.6857 -1.7521 -1.2480 14 6 3.5686 -0.7011 -1.2692 15 6 4.0608 -1.5795 -2.4202 16 7 3.3867 -1.2141 -3.6597 17 6 2.2444 -0.5283 -3.7157 18 8 1.7546 -0.3170 -4.8048 19 6 1.5324 -0.0033 -2.5021 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8899 23 1 1.9032 -0.5278 4.4376 24 1 3.9474 -1.0905 -0.3243 25 1 3.9193 0.3208 -1.4132 26 1 3.8519 -2.6244 -2.1909 27 1 5.1357 -1.4453 -2.5416 28 1 3.7944 -1.4873 -4.4965 29 1 1.7192 1.0663 -2.4072 30 1 0.4612 -0.1745 -2.6085 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261227151.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:52 Heat of formation + Delta-G solvation = -53.944576 kcal Electronic energy + Delta-G solvation = -12906.393498 eV Core-core repulsion = 10700.871795 eV Total energy + Delta-G solvation = -2205.521703 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.95752 -36.79762 -34.73367 -32.23766 -30.03827 -29.18255 -25.41176 -23.87109 -22.33772 -19.49308 -18.79023 -17.19259 -16.60917 -15.66959 -15.08012 -14.58008 -13.96428 -13.56455 -13.32729 -12.95901 -12.68211 -12.15107 -11.86607 -11.43677 -11.03060 -10.87419 -10.46529 -10.39121 -10.12811 -9.79920 -9.62547 -9.03918 -8.93067 -8.84479 -8.57121 -6.10419 -4.09511 2.93655 3.26406 3.37101 3.38922 3.59219 4.39057 5.01960 5.15170 5.20306 5.28852 5.37559 5.71954 5.72982 5.97090 6.16667 6.23256 6.28056 6.37783 6.67768 6.69814 6.77135 6.87718 7.01474 7.10353 7.47907 7.57927 7.73569 8.46568 8.48386 8.91961 9.52685 11.02365 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.054036 B = 0.010746 C = 0.009399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.047257 B = 2604.952583 C = 2978.380186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.014 3.986 3 H 0.028 0.972 4 C -0.511 4.511 5 H 0.076 0.924 6 C 0.069 3.931 7 N -0.902 5.902 8 Si 0.889 3.111 9 H -0.281 1.281 10 H -0.300 1.300 11 H -0.267 1.267 12 C -0.069 4.069 13 H 0.070 0.930 14 C -0.127 4.127 15 C 0.108 3.892 16 N -0.721 5.721 17 C 0.523 3.477 18 O -0.576 6.576 19 C -0.135 4.135 20 H 0.031 0.969 21 H 0.051 0.949 22 H 0.037 0.963 23 H 0.263 0.737 24 H 0.102 0.898 25 H 0.062 0.938 26 H 0.064 0.936 27 H 0.070 0.930 28 H 0.391 0.609 29 H 0.095 0.905 30 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.350 0.361 -8.844 9.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.005 4.005 3 H 0.046 0.954 4 C -0.549 4.549 5 H 0.094 0.906 6 C -0.133 4.133 7 N -0.540 5.540 8 Si 0.720 3.280 9 H -0.208 1.208 10 H -0.228 1.228 11 H -0.192 1.192 12 C -0.088 4.088 13 H 0.089 0.911 14 C -0.165 4.165 15 C -0.016 4.016 16 N -0.372 5.372 17 C 0.311 3.689 18 O -0.457 6.457 19 C -0.175 4.175 20 H 0.050 0.950 21 H 0.070 0.930 22 H 0.056 0.944 23 H 0.073 0.927 24 H 0.121 0.879 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.088 0.912 28 H 0.225 0.775 29 H 0.113 0.887 30 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 2.001 0.536 -8.967 9.204 hybrid contribution -0.409 0.622 0.076 0.749 sum 1.591 1.158 -8.892 9.107 Atomic orbital electron populations 1.22222 0.99416 1.00697 0.98526 1.19185 0.91615 0.96377 0.93346 0.95364 1.21011 1.31943 1.13443 0.88509 0.90554 1.25019 0.95693 0.96602 0.95957 1.69894 1.45746 1.40408 0.97942 0.86829 0.80597 0.83827 0.76742 1.20795 1.22757 1.19196 1.21075 0.94338 0.99851 0.93516 0.91124 1.21861 0.96797 0.99589 0.98249 1.21538 0.96239 0.99519 0.84306 1.45545 1.24779 1.56765 1.10077 1.20483 0.80270 0.76747 0.91396 1.90692 1.65573 1.59128 1.30265 1.21873 1.01069 1.01984 0.92529 0.95033 0.92974 0.94412 0.92707 0.87935 0.91877 0.91792 0.91163 0.77471 0.88673 0.88572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.12 8.34 37.15 0.31 -2.81 16 2 C 0.01 0.29 1.46 -91.77 -0.13 0.16 16 3 H 0.03 0.63 7.20 -51.93 -0.37 0.25 16 4 C -0.51 -13.18 8.33 -34.44 -0.29 -13.46 16 5 H 0.08 2.09 7.07 -52.49 -0.37 1.72 16 6 C 0.07 1.89 5.45 -17.82 -0.10 1.79 16 7 N -0.90 -26.56 13.96 55.43 0.77 -25.78 16 8 Si 0.89 21.43 24.37 -169.99 -4.14 17.28 16 9 H -0.28 -6.68 6.87 56.52 0.39 -6.29 16 10 H -0.30 -7.31 7.11 56.52 0.40 -6.91 16 11 H -0.27 -6.15 6.53 56.52 0.37 -5.78 16 12 C -0.07 -1.22 1.79 -90.64 -0.16 -1.39 16 13 H 0.07 1.29 8.13 -51.93 -0.42 0.87 16 14 C -0.13 -2.01 5.16 -26.83 -0.14 -2.14 16 15 C 0.11 1.35 7.18 -4.48 -0.03 1.32 16 16 N -0.72 -9.86 5.45 -61.39 -0.33 -10.19 16 17 C 0.52 8.75 7.71 -11.87 -0.09 8.66 16 18 O -0.58 -11.47 17.78 5.56 0.10 -11.38 16 19 C -0.13 -2.21 4.65 -28.10 -0.13 -2.34 16 20 H 0.03 0.55 6.71 -51.93 -0.35 0.21 16 21 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 22 H 0.04 0.83 3.27 -51.93 -0.17 0.66 16 23 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 24 H 0.10 1.79 6.51 -51.93 -0.34 1.46 16 25 H 0.06 0.97 8.12 -51.93 -0.42 0.55 16 26 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.39 4.64 8.80 -40.82 -0.36 4.28 16 29 H 0.10 1.51 8.10 -51.93 -0.42 1.09 16 30 H 0.10 1.56 7.09 -51.93 -0.37 1.19 16 LS Contribution 235.87 15.07 3.55 3.55 Total: -1.00 -30.31 235.87 -4.86 -35.17 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -4.04 Total: 1.56 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: -0.76 Total: -10.22 kcal Atomic # 7 Polarization: -36.41 SS G_CDS: 0.44 Total: -35.98 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: 0.10 Total: -11.38 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.14 Total: 17.28 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -30.31 -4.86 -35.17 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261227151.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.778 kcal (2) G-P(sol) polarization free energy of solvation -30.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds