Wall clock time and date at job start Mon Mar 30 2020 02:30:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47579 * 2 1 4 4 C 1.50701 * 109.46751 * 239.99695 * 2 1 3 5 5 H 1.07998 * 120.00175 * 240.00045 * 4 2 1 6 6 C 1.37879 * 119.99825 * 60.00504 * 4 2 1 7 7 N 1.31508 * 119.99916 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99814 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46980 * 59.99817 * 8 6 4 10 10 H 1.48501 * 109.46851 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47155 * 299.99624 * 8 6 4 12 12 C 1.53003 * 109.46979 * 120.00230 * 2 1 3 13 13 H 1.09001 * 109.70165 * 59.48101 * 12 2 1 14 14 C 1.53347 * 109.67129 * 179.97438 * 12 2 1 15 15 C 1.52918 * 108.67079 * 187.26079 * 14 12 2 16 16 N 1.45755 * 110.49264 * 309.24474 * 15 14 12 17 17 C 1.33356 * 124.10311 * 19.36364 * 16 15 14 18 18 O 1.21280 * 118.24518 * 177.49459 * 17 16 15 19 19 C 1.50192 * 123.49312 * 357.20960 * 17 16 15 20 20 H 1.09000 * 109.47325 * 180.02562 * 1 2 3 21 21 H 1.09004 * 109.46671 * 300.00084 * 1 2 3 22 22 H 1.08994 * 109.47201 * 59.99974 * 1 2 3 23 23 H 0.97001 * 119.99925 * 179.97438 * 7 6 4 24 24 H 1.09004 * 109.60260 * 67.50657 * 14 12 2 25 25 H 1.08990 * 109.74076 * 307.10029 * 14 12 2 26 26 H 1.09010 * 109.29931 * 188.93365 * 15 14 12 27 27 H 1.09002 * 109.30404 * 69.56509 * 15 14 12 28 28 H 0.97001 * 117.94686 * 199.07122 * 16 15 14 29 29 H 1.09003 * 109.60092 * 257.85826 * 19 17 16 30 30 H 1.08997 * 109.19142 * 138.03411 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6531 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3223 -1.1197 -4.0079 9 1 1.8278 -2.5199 -4.0081 10 1 1.8267 -0.4200 -5.2204 11 1 3.8073 -1.1191 -4.0078 12 6 2.0400 -0.7213 1.2492 13 1 1.6711 -1.7470 1.2577 14 6 3.5735 -0.7246 1.2536 15 6 4.0579 -1.6026 2.4081 16 7 3.4002 -1.2196 3.6512 17 6 2.2659 -0.5210 3.7126 18 8 1.7864 -0.3000 4.8044 19 6 1.5542 0.0118 2.5021 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 0.7088 1.1613 -3.4844 24 1 3.9409 0.2927 1.3887 25 1 3.9434 -1.1246 0.3097 26 1 5.1360 -1.4874 2.5206 27 1 3.8313 -2.6457 2.1871 28 1 3.8112 -1.4935 4.4860 29 1 1.7562 1.0780 2.3989 30 1 0.4818 -0.1438 2.6196 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261227153.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:54 Heat of formation + Delta-G solvation = -80.947852 kcal Electronic energy + Delta-G solvation = -12855.213274 eV Core-core repulsion = 10648.520621 eV Total energy + Delta-G solvation = -2206.692652 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.22762 -38.15983 -36.11663 -34.00357 -30.97528 -30.41260 -27.21572 -25.35528 -23.55382 -21.23170 -20.04237 -18.46504 -18.10497 -16.85823 -16.55948 -16.17654 -15.18868 -15.12046 -14.68560 -14.23235 -14.02205 -13.58099 -12.83133 -12.79042 -12.60044 -12.50402 -12.24101 -11.98924 -11.80430 -11.49237 -11.34233 -10.62077 -10.48047 -10.33398 -10.00256 -8.00743 -6.12927 1.47472 1.48438 1.54814 1.63310 2.44323 2.49421 3.27787 3.77898 3.99807 4.06920 4.10942 4.55340 4.64526 4.72478 4.87488 4.97840 5.06613 5.09037 5.31436 5.38316 5.46934 5.52493 5.71824 5.92544 6.04355 6.19365 6.36044 6.45463 6.98761 7.25465 7.54967 9.03941 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.055281 B = 0.009960 C = 0.008741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.385285 B = 2810.555911 C = 3202.423581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.048 3.952 3 H 0.000 1.000 4 C -0.517 4.517 5 H 0.065 0.935 6 C 0.008 3.992 7 N -0.922 5.922 8 Si 0.948 3.052 9 H -0.273 1.273 10 H -0.294 1.294 11 H -0.268 1.268 12 C -0.071 4.071 13 H 0.062 0.938 14 C -0.124 4.124 15 C 0.113 3.887 16 N -0.706 5.706 17 C 0.523 3.477 18 O -0.612 6.612 19 C -0.127 4.127 20 H 0.025 0.975 21 H 0.028 0.972 22 H 0.051 0.949 23 H 0.257 0.743 24 H 0.059 0.941 25 H 0.089 0.911 26 H 0.105 0.895 27 H 0.077 0.923 28 H 0.404 0.596 29 H 0.094 0.906 30 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.622 -4.883 6.264 10.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.029 3.971 3 H 0.018 0.982 4 C -0.555 4.555 5 H 0.083 0.917 6 C -0.190 4.190 7 N -0.562 5.562 8 Si 0.775 3.225 9 H -0.199 1.199 10 H -0.220 1.220 11 H -0.193 1.193 12 C -0.089 4.089 13 H 0.081 0.919 14 C -0.162 4.162 15 C -0.010 4.010 16 N -0.357 5.357 17 C 0.311 3.689 18 O -0.496 6.496 19 C -0.166 4.166 20 H 0.044 0.956 21 H 0.047 0.953 22 H 0.070 0.930 23 H 0.066 0.934 24 H 0.078 0.922 25 H 0.107 0.893 26 H 0.123 0.877 27 H 0.095 0.905 28 H 0.240 0.760 29 H 0.112 0.888 30 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 6.227 -4.607 6.442 10.075 hybrid contribution 0.077 -0.194 -0.834 0.860 sum 6.305 -4.801 5.608 9.708 Atomic orbital electron populations 1.21738 0.99117 0.98712 0.99627 1.18643 0.92316 0.94393 0.91737 0.98234 1.21530 1.30476 1.12231 0.91228 0.91677 1.25730 0.95589 0.95734 1.01929 1.70028 1.38114 1.24467 1.23614 0.85760 0.78991 0.78662 0.79101 1.19869 1.21982 1.19277 1.21184 0.95836 0.98823 0.93089 0.91946 1.21852 0.95144 1.00242 0.98931 1.21617 0.98080 0.99033 0.82288 1.45427 1.24326 1.54654 1.11255 1.20430 0.80811 0.77038 0.90571 1.90676 1.66895 1.61022 1.30979 1.21728 1.00929 1.01803 0.92161 0.95603 0.95256 0.93015 0.93409 0.92193 0.89277 0.87656 0.90456 0.75963 0.88757 0.89138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.27 8.66 71.98 0.62 -5.65 16 2 C 0.05 2.20 1.87 -11.54 -0.02 2.18 16 3 H 0.00 -0.03 8.14 -2.39 -0.02 -0.04 16 4 C -0.52 -25.94 7.75 25.60 0.20 -25.74 16 5 H 0.07 3.09 6.76 -2.91 -0.02 3.07 16 6 C 0.01 0.42 5.30 84.66 0.45 0.87 16 7 N -0.92 -52.00 11.32 21.45 0.24 -51.76 16 8 Si 0.95 41.61 29.54 68.60 2.03 43.64 16 9 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 10 H -0.29 -13.05 7.11 99.48 0.71 -12.35 16 11 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 12 C -0.07 -2.56 1.79 -10.65 -0.02 -2.58 16 13 H 0.06 2.28 8.13 -2.39 -0.02 2.27 16 14 C -0.12 -3.74 5.17 30.68 0.16 -3.58 16 15 C 0.11 2.47 7.17 86.49 0.62 3.09 16 16 N -0.71 -17.95 5.45 -467.28 -2.55 -20.49 16 17 C 0.52 17.50 7.71 87.72 0.68 18.18 16 18 O -0.61 -24.67 17.78 -3.03 -0.05 -24.72 16 19 C -0.13 -4.37 4.69 29.71 0.14 -4.23 16 20 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 21 H 0.03 1.21 6.74 -2.38 -0.02 1.19 16 22 H 0.05 2.73 6.07 -2.39 -0.01 2.72 16 23 H 0.26 14.00 8.31 -92.71 -0.77 13.23 16 24 H 0.06 1.84 8.12 -2.38 -0.02 1.82 16 25 H 0.09 2.86 6.47 -2.39 -0.02 2.84 16 26 H 0.11 1.65 8.14 -2.38 -0.02 1.63 16 27 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.40 8.58 8.80 -92.71 -0.82 7.76 16 29 H 0.09 3.27 8.10 -2.39 -0.02 3.25 16 30 H 0.09 3.19 7.11 -2.39 -0.02 3.18 16 Total: -1.00 -61.91 242.69 2.81 -59.10 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: 0.32 Total: 11.70 kcal Atomic # 6 Polarization: -20.29 SS G_CDS: 2.82 Total: -17.47 kcal Atomic # 7 Polarization: -69.95 SS G_CDS: -2.30 Total: -72.25 kcal Atomic # 8 Polarization: -24.67 SS G_CDS: -0.05 Total: -24.72 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 2.03 Total: 43.64 kcal Total: -61.91 2.81 -59.10 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261227153.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.843 kcal (2) G-P(sol) polarization free energy of solvation -61.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds