Wall clock time and date at job start Mon Mar 30 2020 02:30:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.47283 * 2 1 4 4 C 1.50703 * 109.47206 * 120.00339 * 2 1 3 5 5 H 1.08002 * 119.99963 * 119.99730 * 4 2 1 6 6 C 1.37871 * 120.00042 * 300.00150 * 4 2 1 7 7 N 1.31509 * 120.00128 * 179.97438 * 6 4 2 8 8 Si 1.86797 * 120.00047 * 359.97438 * 6 4 2 9 9 H 1.48507 * 109.47412 * 90.00223 * 8 6 4 10 10 H 1.48500 * 109.47484 * 210.00220 * 8 6 4 11 11 H 1.48506 * 109.47121 * 330.00657 * 8 6 4 12 12 C 1.53003 * 109.46867 * 240.00020 * 2 1 3 13 13 H 1.09000 * 109.67553 * 299.50354 * 12 2 1 14 14 C 1.53347 * 109.67129 * 60.00191 * 12 2 1 15 15 C 1.52918 * 108.67079 * 187.26079 * 14 12 2 16 16 N 1.45755 * 110.49264 * 309.24474 * 15 14 12 17 17 C 1.33356 * 124.10311 * 19.36364 * 16 15 14 18 18 O 1.21280 * 118.24518 * 177.49459 * 17 16 15 19 19 C 1.50192 * 123.49312 * 357.20960 * 17 16 15 20 20 H 1.09000 * 109.47535 * 59.99493 * 1 2 3 21 21 H 1.09000 * 109.47733 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.46988 * 299.99572 * 1 2 3 23 23 H 0.97005 * 120.00437 * 179.97438 * 7 6 4 24 24 H 1.09004 * 109.60260 * 67.50657 * 14 12 2 25 25 H 1.08997 * 109.60534 * 307.01939 * 14 12 2 26 26 H 1.09010 * 109.29931 * 188.93365 * 15 14 12 27 27 H 1.09002 * 109.30404 * 69.56509 * 15 14 12 28 28 H 0.97001 * 117.94686 * 199.07122 * 16 15 14 29 29 H 1.09003 * 109.60092 * 257.85826 * 19 17 16 30 30 H 1.08997 * 109.19142 * 138.03411 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2396 2.4827 7 7 2.1372 -0.8598 3.5564 8 14 0.6258 1.2796 2.6542 9 1 -0.8021 0.8743 2.6994 10 1 0.9771 1.9951 3.9071 11 1 0.8490 2.1771 1.4923 12 6 2.0399 -0.7213 -1.2493 13 1 1.6856 -1.7521 -1.2482 14 6 1.5313 -0.0019 -2.5044 15 6 1.8984 -0.8384 -3.7307 16 7 3.3130 -1.1887 -3.7045 17 6 4.0704 -1.1594 -2.6073 18 8 5.2258 -1.5169 -2.6977 19 6 3.5704 -0.7016 -1.2671 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8901 23 1 1.9032 -0.5283 4.4375 24 1 1.9990 0.9799 -2.5781 25 1 0.4484 0.1095 -2.4486 26 1 1.6856 -0.2664 -4.6339 27 1 1.3015 -1.7504 -3.7367 28 1 3.7286 -1.4642 -4.5366 29 1 3.9217 0.3118 -1.0724 30 1 3.9500 -1.3710 -0.4952 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261227155.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:56 Heat of formation + Delta-G solvation = -52.340789 kcal Electronic energy + Delta-G solvation = -12912.084792 eV Core-core repulsion = 10706.632634 eV Total energy + Delta-G solvation = -2205.452157 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.88876 -36.79867 -34.68628 -32.16679 -30.00514 -29.33135 -25.15922 -23.96778 -22.50153 -19.39956 -18.80065 -17.12691 -16.60506 -15.58080 -15.01988 -14.71434 -13.86102 -13.73856 -13.26613 -12.85738 -12.64725 -12.30169 -11.74738 -11.47908 -11.12967 -10.84327 -10.47784 -10.38637 -10.13534 -9.78878 -9.56122 -8.99252 -8.91246 -8.84702 -8.55134 -6.07043 -4.06678 3.04953 3.26133 3.36410 3.39382 3.60855 4.40352 5.03430 5.08276 5.12935 5.25963 5.35344 5.63900 5.78186 5.99028 6.13218 6.17659 6.22091 6.40139 6.61184 6.68912 6.76788 6.81801 7.02069 7.13192 7.47343 7.62785 7.75849 8.50727 8.56592 8.96648 9.55164 11.06027 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.048781 B = 0.011150 C = 0.009615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.856393 B = 2510.651479 C = 2911.417101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.014 3.986 3 H 0.028 0.972 4 C -0.514 4.514 5 H 0.076 0.924 6 C 0.069 3.931 7 N -0.900 5.900 8 Si 0.890 3.110 9 H -0.281 1.281 10 H -0.300 1.300 11 H -0.267 1.267 12 C -0.069 4.069 13 H 0.070 0.930 14 C -0.141 4.141 15 C 0.113 3.887 16 N -0.725 5.725 17 C 0.520 3.480 18 O -0.571 6.571 19 C -0.119 4.119 20 H 0.031 0.969 21 H 0.051 0.949 22 H 0.037 0.963 23 H 0.263 0.737 24 H 0.067 0.933 25 H 0.085 0.915 26 H 0.068 0.932 27 H 0.061 0.939 28 H 0.390 0.610 29 H 0.096 0.904 30 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.849 2.544 -12.605 13.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.005 4.005 3 H 0.046 0.954 4 C -0.552 4.552 5 H 0.094 0.906 6 C -0.133 4.133 7 N -0.539 5.539 8 Si 0.721 3.279 9 H -0.208 1.208 10 H -0.227 1.227 11 H -0.192 1.192 12 C -0.088 4.088 13 H 0.089 0.911 14 C -0.178 4.178 15 C -0.012 4.012 16 N -0.377 5.377 17 C 0.309 3.691 18 O -0.450 6.450 19 C -0.158 4.158 20 H 0.050 0.950 21 H 0.070 0.930 22 H 0.056 0.944 23 H 0.073 0.927 24 H 0.085 0.915 25 H 0.103 0.897 26 H 0.086 0.914 27 H 0.080 0.920 28 H 0.225 0.775 29 H 0.114 0.886 30 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -3.361 2.433 -12.222 12.907 hybrid contribution -0.640 0.691 -0.066 0.944 sum -4.001 3.123 -12.288 13.295 Atomic orbital electron populations 1.22231 0.99387 1.00634 0.98413 1.19182 0.91615 0.96346 0.93367 0.95388 1.21046 1.31973 1.13563 0.88591 0.90624 1.25029 0.95727 0.96584 0.95946 1.69901 1.45679 1.40344 0.97939 0.86819 0.80484 0.83843 0.76762 1.20833 1.22737 1.19224 1.21154 0.93132 1.00064 0.94433 0.91147 1.22126 1.02471 0.99047 0.94166 1.21383 0.81126 0.99256 0.99389 1.45533 1.11470 1.69482 1.11220 1.20781 0.85321 0.76164 0.86882 1.90696 1.18712 1.49276 1.86364 1.21663 0.97447 1.04251 0.92488 0.95010 0.92999 0.94428 0.92705 0.91473 0.89703 0.91382 0.92040 0.77537 0.88550 0.87314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.97 8.34 37.15 0.31 -2.66 16 2 C 0.01 0.29 1.46 -91.77 -0.13 0.16 16 3 H 0.03 0.62 7.20 -51.93 -0.37 0.25 16 4 C -0.51 -13.65 8.54 -34.44 -0.29 -13.95 16 5 H 0.08 2.18 7.09 -52.49 -0.37 1.81 16 6 C 0.07 1.92 5.45 -17.82 -0.10 1.83 16 7 N -0.90 -27.15 13.96 55.43 0.77 -26.38 16 8 Si 0.89 21.50 24.37 -169.99 -4.14 17.36 16 9 H -0.28 -6.64 6.87 56.52 0.39 -6.25 16 10 H -0.30 -7.35 7.11 56.52 0.40 -6.95 16 11 H -0.27 -6.12 6.53 56.52 0.37 -5.75 16 12 C -0.07 -1.23 1.79 -90.40 -0.16 -1.39 16 13 H 0.07 1.29 8.13 -51.93 -0.42 0.87 16 14 C -0.14 -1.91 5.14 -26.59 -0.14 -2.04 16 15 C 0.11 1.27 7.17 -4.49 -0.03 1.24 16 16 N -0.73 -9.92 5.45 -61.38 -0.33 -10.25 16 17 C 0.52 9.25 7.71 -11.86 -0.09 9.16 16 18 O -0.57 -12.20 17.78 5.56 0.10 -12.10 16 19 C -0.12 -2.21 4.90 -28.09 -0.14 -2.35 16 20 H 0.03 0.51 6.30 -51.93 -0.33 0.19 16 21 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 22 H 0.04 0.80 3.27 -51.93 -0.17 0.63 16 23 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 24 H 0.07 0.90 8.12 -51.93 -0.42 0.48 16 25 H 0.08 1.06 6.12 -51.93 -0.32 0.74 16 26 H 0.07 0.59 8.14 -51.92 -0.42 0.16 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.39 4.64 8.80 -40.82 -0.36 4.28 16 29 H 0.10 1.77 8.10 -51.93 -0.42 1.35 16 30 H 0.11 2.27 7.10 -51.93 -0.37 1.90 16 LS Contribution 235.55 15.07 3.55 3.55 Total: -1.00 -31.33 235.55 -4.83 -36.16 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -4.00 Total: 1.66 kcal Atomic # 6 Polarization: -9.23 SS G_CDS: -0.78 Total: -10.00 kcal Atomic # 7 Polarization: -37.07 SS G_CDS: 0.44 Total: -36.63 kcal Atomic # 8 Polarization: -12.20 SS G_CDS: 0.10 Total: -12.10 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.14 Total: 17.36 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -31.33 -4.83 -36.16 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261227155.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.177 kcal (2) G-P(sol) polarization free energy of solvation -31.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds