Wall clock time and date at job start Mon Mar 30 2020 02:30:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.47283 * 2 1 4 4 C 1.50703 * 109.47206 * 120.00339 * 2 1 3 5 5 H 1.08002 * 119.99963 * 119.99730 * 4 2 1 6 6 C 1.37871 * 120.00042 * 300.00150 * 4 2 1 7 7 N 1.31509 * 120.00128 * 179.97438 * 6 4 2 8 8 Si 1.86797 * 120.00047 * 359.97438 * 6 4 2 9 9 H 1.48507 * 109.47412 * 90.00223 * 8 6 4 10 10 H 1.48500 * 109.47484 * 210.00220 * 8 6 4 11 11 H 1.48506 * 109.47121 * 330.00657 * 8 6 4 12 12 C 1.53003 * 109.46867 * 240.00020 * 2 1 3 13 13 H 1.09000 * 109.67553 * 299.50354 * 12 2 1 14 14 C 1.53347 * 109.67129 * 60.00191 * 12 2 1 15 15 C 1.52918 * 108.67079 * 187.26079 * 14 12 2 16 16 N 1.45755 * 110.49264 * 309.24474 * 15 14 12 17 17 C 1.33356 * 124.10311 * 19.36364 * 16 15 14 18 18 O 1.21280 * 118.24518 * 177.49459 * 17 16 15 19 19 C 1.50192 * 123.49312 * 357.20960 * 17 16 15 20 20 H 1.09000 * 109.47535 * 59.99493 * 1 2 3 21 21 H 1.09000 * 109.47733 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.46988 * 299.99572 * 1 2 3 23 23 H 0.97005 * 120.00437 * 179.97438 * 7 6 4 24 24 H 1.09004 * 109.60260 * 67.50657 * 14 12 2 25 25 H 1.08997 * 109.60534 * 307.01939 * 14 12 2 26 26 H 1.09010 * 109.29931 * 188.93365 * 15 14 12 27 27 H 1.09002 * 109.30404 * 69.56509 * 15 14 12 28 28 H 0.97001 * 117.94686 * 199.07122 * 16 15 14 29 29 H 1.09003 * 109.60092 * 257.85826 * 19 17 16 30 30 H 1.08997 * 109.19142 * 138.03411 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2396 2.4827 7 7 2.1372 -0.8598 3.5564 8 14 0.6258 1.2796 2.6542 9 1 -0.8021 0.8743 2.6994 10 1 0.9771 1.9951 3.9071 11 1 0.8490 2.1771 1.4923 12 6 2.0399 -0.7213 -1.2493 13 1 1.6856 -1.7521 -1.2482 14 6 1.5313 -0.0019 -2.5044 15 6 1.8984 -0.8384 -3.7307 16 7 3.3130 -1.1887 -3.7045 17 6 4.0704 -1.1594 -2.6073 18 8 5.2258 -1.5169 -2.6977 19 6 3.5704 -0.7016 -1.2671 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8901 23 1 1.9032 -0.5283 4.4375 24 1 1.9990 0.9799 -2.5781 25 1 0.4484 0.1095 -2.4486 26 1 1.6856 -0.2664 -4.6339 27 1 1.3015 -1.7504 -3.7367 28 1 3.7286 -1.4642 -4.5366 29 1 3.9217 0.3118 -1.0724 30 1 3.9500 -1.3710 -0.4952 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261227155.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:56 Heat of formation + Delta-G solvation = -76.167075 kcal Electronic energy + Delta-G solvation = -12913.117977 eV Core-core repulsion = 10706.632634 eV Total energy + Delta-G solvation = -2206.485342 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.25072 -38.29952 -36.15283 -34.08894 -31.62688 -30.59178 -27.03567 -25.34126 -23.90495 -21.04836 -20.08694 -18.80483 -18.20211 -16.97174 -16.65022 -16.22395 -15.27649 -15.16097 -14.89385 -14.48491 -14.11821 -13.93974 -13.23916 -13.04069 -12.55918 -12.49421 -12.06789 -11.97810 -11.72106 -11.44637 -11.25776 -10.78628 -10.67785 -10.47387 -10.00159 -8.23035 -6.26155 1.34950 1.40718 1.51203 1.62940 2.37990 2.43637 3.13570 3.76468 3.94637 3.99884 4.05426 4.52908 4.59340 4.64328 4.71191 4.82906 5.01012 5.02562 5.09237 5.19327 5.27334 5.35872 5.54810 5.77286 5.83066 5.94478 6.35510 6.38862 6.82608 7.25576 7.39251 8.94042 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.048781 B = 0.011150 C = 0.009615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.856393 B = 2510.651479 C = 2911.417101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.011 3.989 3 H 0.029 0.971 4 C -0.511 4.511 5 H 0.031 0.969 6 C 0.003 3.997 7 N -0.957 5.957 8 Si 0.955 3.045 9 H -0.269 1.269 10 H -0.309 1.309 11 H -0.240 1.240 12 C -0.064 4.064 13 H 0.061 0.939 14 C -0.134 4.134 15 C 0.110 3.890 16 N -0.707 5.707 17 C 0.522 3.478 18 O -0.616 6.616 19 C -0.118 4.118 20 H 0.078 0.922 21 H 0.049 0.951 22 H 0.023 0.977 23 H 0.262 0.738 24 H 0.073 0.927 25 H 0.108 0.892 26 H 0.113 0.887 27 H 0.078 0.922 28 H 0.404 0.596 29 H 0.095 0.905 30 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.116 4.208 -15.493 17.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.008 4.008 3 H 0.047 0.953 4 C -0.549 4.549 5 H 0.050 0.950 6 C -0.193 4.193 7 N -0.598 5.598 8 Si 0.782 3.218 9 H -0.195 1.195 10 H -0.238 1.238 11 H -0.164 1.164 12 C -0.083 4.083 13 H 0.079 0.921 14 C -0.172 4.172 15 C -0.013 4.013 16 N -0.357 5.357 17 C 0.310 3.690 18 O -0.499 6.499 19 C -0.158 4.158 20 H 0.097 0.903 21 H 0.068 0.932 22 H 0.041 0.959 23 H 0.071 0.929 24 H 0.092 0.908 25 H 0.126 0.874 26 H 0.131 0.869 27 H 0.096 0.904 28 H 0.240 0.760 29 H 0.113 0.887 30 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.674 4.100 -15.179 16.715 hybrid contribution 0.106 0.087 0.802 0.814 sum -5.568 4.188 -14.376 15.975 Atomic orbital electron populations 1.22156 0.97198 1.01148 0.99954 1.19182 0.93337 0.95818 0.92473 0.95329 1.21448 1.30293 1.12143 0.91014 0.95024 1.25963 0.97585 1.00142 0.95593 1.70082 1.48311 1.42848 0.98588 0.85767 0.78891 0.80043 0.77071 1.19498 1.23787 1.16353 1.21049 0.92002 0.99845 0.95405 0.92072 1.22102 1.03749 0.99027 0.92290 1.21674 0.79150 1.00397 1.00060 1.45428 1.12450 1.67543 1.10326 1.20487 0.84978 0.76136 0.87413 1.90676 1.20666 1.51581 1.87002 1.21535 0.98557 1.03195 0.92500 0.90304 0.93168 0.95865 0.92935 0.90784 0.87372 0.86933 0.90354 0.75990 0.88699 0.91266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.32 8.34 71.98 0.60 -4.72 16 2 C 0.01 0.44 1.46 -11.54 -0.02 0.42 16 3 H 0.03 1.20 7.20 -2.39 -0.02 1.18 16 4 C -0.51 -27.93 8.54 25.60 0.22 -27.71 16 5 H 0.03 1.95 7.09 -2.91 -0.02 1.93 16 6 C 0.00 0.17 5.45 84.65 0.46 0.63 16 7 N -0.96 -60.25 13.96 21.44 0.30 -59.95 16 8 Si 0.95 44.05 24.37 68.60 1.67 45.72 16 9 H -0.27 -11.77 6.87 99.48 0.68 -11.09 16 10 H -0.31 -14.64 7.11 99.48 0.71 -13.93 16 11 H -0.24 -9.91 6.53 99.48 0.65 -9.26 16 12 C -0.06 -2.17 1.79 -10.65 -0.02 -2.19 16 13 H 0.06 2.17 8.13 -2.39 -0.02 2.15 16 14 C -0.13 -2.99 5.14 30.68 0.16 -2.84 16 15 C 0.11 1.89 7.17 86.49 0.62 2.51 16 16 N -0.71 -17.08 5.45 -467.28 -2.55 -19.62 16 17 C 0.52 18.21 7.71 87.72 0.68 18.89 16 18 O -0.62 -26.63 17.78 -3.03 -0.05 -26.69 16 19 C -0.12 -4.45 4.90 29.71 0.15 -4.31 16 20 H 0.08 2.11 6.30 -2.39 -0.02 2.09 16 21 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 22 H 0.02 0.90 3.27 -2.39 -0.01 0.89 16 23 H 0.26 15.55 8.31 -92.70 -0.77 14.78 16 24 H 0.07 1.61 8.12 -2.38 -0.02 1.59 16 25 H 0.11 1.98 6.12 -2.39 -0.01 1.96 16 26 H 0.11 1.13 8.14 -2.38 -0.02 1.11 16 27 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.40 8.21 8.80 -92.71 -0.82 7.40 16 29 H 0.09 3.53 8.10 -2.39 -0.02 3.51 16 30 H 0.07 3.12 7.10 -2.39 -0.02 3.10 16 Total: -1.00 -71.94 235.55 2.46 -69.48 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: 0.24 Total: 10.37 kcal Atomic # 6 Polarization: -22.16 SS G_CDS: 2.84 Total: -19.31 kcal Atomic # 7 Polarization: -77.32 SS G_CDS: -2.25 Total: -79.57 kcal Atomic # 8 Polarization: -26.63 SS G_CDS: -0.05 Total: -26.69 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 1.67 Total: 45.72 kcal Total: -71.94 2.46 -69.48 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261227155.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.687 kcal (2) G-P(sol) polarization free energy of solvation -71.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds