Wall clock time and date at job start Mon Mar 30 2020 02:30:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47053 * 2 1 4 4 C 1.50700 * 109.46978 * 240.00195 * 2 1 3 5 5 H 1.08005 * 119.99529 * 245.48664 * 4 2 1 6 6 C 1.37879 * 120.00512 * 65.48802 * 4 2 1 7 7 N 1.31513 * 119.99543 * 9.37203 * 6 4 2 8 8 Si 1.86797 * 120.00005 * 189.37192 * 6 4 2 9 9 H 1.48496 * 109.47093 * 84.99425 * 8 6 4 10 10 H 1.48499 * 109.46739 * 204.99409 * 8 6 4 11 11 H 1.48504 * 109.47238 * 324.99474 * 8 6 4 12 12 C 1.52998 * 109.46927 * 120.00055 * 2 1 3 13 13 H 1.08998 * 109.60249 * 59.67826 * 12 2 1 14 14 C 1.53367 * 109.73387 * 299.25166 * 12 2 1 15 15 C 1.53068 * 108.41276 * 172.61984 * 14 12 2 16 16 C 1.50176 * 109.89099 * 48.91046 * 15 14 12 17 17 O 1.21282 * 118.24831 * 162.42252 * 16 15 14 18 18 N 1.33357 * 123.50749 * 342.43925 * 16 15 14 19 19 C 1.45751 * 124.10594 * 2.17830 * 18 16 15 20 20 H 1.09001 * 109.47018 * 185.16979 * 1 2 3 21 21 H 1.08998 * 109.47180 * 305.17507 * 1 2 3 22 22 H 1.09003 * 109.47102 * 65.17475 * 1 2 3 23 23 H 0.97004 * 119.99971 * 179.97438 * 7 6 4 24 24 H 1.09003 * 109.67079 * 52.89569 * 14 12 2 25 25 H 1.08995 * 109.68716 * 292.35420 * 14 12 2 26 26 H 1.08996 * 109.40094 * 288.78184 * 15 14 12 27 27 H 1.08996 * 109.40304 * 169.03623 * 15 14 12 28 28 H 0.97000 * 117.94710 * 182.20037 * 18 16 15 29 29 H 1.09003 * 109.29972 * 101.26063 * 19 18 16 30 30 H 1.09000 * 109.29947 * 220.63512 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5782 -1.6373 -1.1338 6 6 1.7951 -0.1771 -2.4796 7 7 1.2969 1.0347 -2.5934 8 14 2.1814 -1.1757 -4.0103 9 1 1.0321 -2.0614 -4.3265 10 1 2.4274 -0.2576 -5.1512 11 1 3.3916 -2.0021 -3.7699 12 6 2.0400 -0.7213 1.2492 13 1 1.6731 -1.7476 1.2543 14 6 1.5475 0.0078 2.5054 15 6 1.9147 -0.8354 3.7290 16 6 3.3579 -1.2437 3.6537 17 8 3.8993 -1.6285 4.6685 18 7 4.0762 -1.2055 2.5308 19 6 3.5692 -0.7230 1.2523 20 1 -0.3633 -1.0235 0.0926 21 1 -0.3633 0.5920 0.8400 22 1 -0.3633 0.4315 -0.9327 23 1 1.1303 1.4101 -3.4722 24 1 0.4657 0.1325 2.4569 25 1 2.0272 0.9841 2.5752 26 1 1.2873 -1.7262 3.7563 27 1 1.7507 -0.2507 4.6341 28 1 4.9935 -1.5188 2.5670 29 1 3.9309 0.2909 1.0808 30 1 3.9303 -1.3710 0.4538 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261231051.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:26 Heat of formation + Delta-G solvation = -63.899099 kcal Electronic energy + Delta-G solvation = -12825.442847 eV Core-core repulsion = 10619.489484 eV Total energy + Delta-G solvation = -2205.953363 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.83431 -36.79801 -33.95293 -32.50663 -30.75927 -27.76213 -25.35988 -23.58485 -22.48544 -19.97509 -18.44073 -16.70754 -16.42730 -15.41464 -14.99416 -14.56841 -13.74323 -13.57137 -13.13160 -12.89247 -12.47696 -12.00615 -11.27031 -11.21486 -10.99625 -10.81169 -10.59045 -10.44039 -10.26747 -9.91928 -9.40698 -9.17233 -8.81420 -8.60682 -8.39228 -6.08822 -4.11333 2.99045 3.26276 3.33712 3.35368 3.75767 4.37923 5.01612 5.24578 5.29251 5.31282 5.47193 5.84623 5.93863 6.11599 6.22452 6.28790 6.60740 6.65367 6.72252 6.87608 7.03889 7.10640 7.23182 7.63613 7.75202 7.86713 7.94107 8.34174 8.56730 8.91915 9.53052 10.99965 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.055205 B = 0.009664 C = 0.008668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.080817 B = 2896.802480 C = 3229.618743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.051 3.949 3 H 0.036 0.964 4 C -0.519 4.519 5 H 0.056 0.944 6 C 0.065 3.935 7 N -0.886 5.886 8 Si 0.885 3.115 9 H -0.280 1.280 10 H -0.288 1.288 11 H -0.275 1.275 12 C -0.090 4.090 13 H 0.065 0.935 14 C -0.124 4.124 15 C -0.134 4.134 16 C 0.519 3.481 17 O -0.583 6.583 18 N -0.717 5.717 19 C 0.118 3.882 20 H 0.026 0.974 21 H 0.016 0.984 22 H 0.064 0.936 23 H 0.261 0.739 24 H 0.077 0.923 25 H 0.064 0.936 26 H 0.094 0.906 27 H 0.091 0.909 28 H 0.392 0.608 29 H 0.065 0.935 30 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.722 -1.711 5.746 6.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.032 3.968 3 H 0.054 0.946 4 C -0.557 4.557 5 H 0.074 0.926 6 C -0.137 4.137 7 N -0.524 5.524 8 Si 0.713 3.287 9 H -0.206 1.206 10 H -0.214 1.214 11 H -0.200 1.200 12 C -0.109 4.109 13 H 0.083 0.917 14 C -0.161 4.161 15 C -0.174 4.174 16 C 0.307 3.693 17 O -0.464 6.464 18 N -0.367 5.367 19 C -0.005 4.005 20 H 0.045 0.955 21 H 0.035 0.965 22 H 0.083 0.917 23 H 0.070 0.930 24 H 0.096 0.904 25 H 0.082 0.918 26 H 0.112 0.888 27 H 0.109 0.891 28 H 0.226 0.774 29 H 0.083 0.917 30 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.703 -1.676 6.093 6.359 hybrid contribution 0.477 -0.618 -1.125 1.369 sum 1.180 -2.294 4.969 5.599 Atomic orbital electron populations 1.21781 0.98916 0.98229 0.99995 1.18641 0.92199 0.96211 0.89786 0.94565 1.21131 1.35886 1.07972 0.90685 0.92615 1.24943 0.95237 0.94547 0.98951 1.69957 1.44764 1.13965 1.23729 0.86726 0.78726 0.80204 0.83027 1.20647 1.21389 1.20008 1.21558 0.92744 1.00250 0.96333 0.91701 1.21858 1.02360 0.98564 0.93323 1.21645 0.92590 1.02179 1.00973 1.20257 0.89632 0.76822 0.82586 1.90690 1.72017 1.49631 1.34069 1.45710 1.15973 1.64595 1.10395 1.21569 0.96145 0.99973 0.82783 0.95461 0.96541 0.91702 0.92959 0.90429 0.91770 0.88756 0.89051 0.77418 0.91721 0.89833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.85 8.62 37.16 0.32 -2.53 16 2 C 0.05 1.13 1.75 -91.77 -0.16 0.96 16 3 H 0.04 0.89 8.09 -51.93 -0.42 0.47 16 4 C -0.52 -12.93 7.75 -34.44 -0.27 -13.20 16 5 H 0.06 1.36 6.97 -52.48 -0.37 1.00 16 6 C 0.07 1.70 5.16 -17.82 -0.09 1.61 16 7 N -0.89 -24.21 12.16 55.43 0.67 -23.54 16 8 Si 0.89 20.28 29.55 -169.99 -5.02 15.25 16 9 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 10 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 12 C -0.09 -1.63 1.79 -90.47 -0.16 -1.79 16 13 H 0.06 1.21 8.12 -51.93 -0.42 0.78 16 14 C -0.12 -1.93 5.17 -26.51 -0.14 -2.07 16 15 C -0.13 -1.96 6.03 -28.10 -0.17 -2.13 16 16 C 0.52 8.88 7.71 -11.87 -0.09 8.79 16 17 O -0.58 -11.74 17.78 5.56 0.10 -11.64 16 18 N -0.72 -11.33 5.45 -61.39 -0.33 -11.67 16 19 C 0.12 2.00 6.05 -4.49 -0.03 1.97 16 20 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 21 H 0.02 0.30 6.60 -51.93 -0.34 -0.04 16 22 H 0.06 1.59 6.80 -51.93 -0.35 1.23 16 23 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 24 H 0.08 1.17 6.27 -51.93 -0.33 0.85 16 25 H 0.06 1.00 8.13 -51.93 -0.42 0.58 16 26 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 27 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.39 5.57 8.80 -40.82 -0.36 5.22 16 29 H 0.06 1.11 8.12 -51.93 -0.42 0.69 16 30 H 0.08 1.45 7.05 -51.93 -0.37 1.08 16 LS Contribution 243.96 15.07 3.68 3.68 Total: -1.00 -28.31 243.96 -5.89 -34.21 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -4.20 Total: 2.08 kcal Atomic # 6 Polarization: -7.59 SS G_CDS: -0.79 Total: -8.37 kcal Atomic # 7 Polarization: -35.55 SS G_CDS: 0.34 Total: -35.21 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: 0.10 Total: -11.64 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -28.31 -5.89 -34.21 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261231051.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.690 kcal (2) G-P(sol) polarization free energy of solvation -28.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds