Wall clock time and date at job start Mon Mar 30 2020 02:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47131 * 2 1 4 4 C 1.50702 * 109.47245 * 240.00111 * 2 1 3 5 5 H 1.08002 * 120.00299 * 240.00501 * 4 2 1 6 6 C 1.37884 * 119.99942 * 59.72060 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48501 * 109.47188 * 90.00793 * 8 6 4 10 10 H 1.48501 * 109.47085 * 210.00372 * 8 6 4 11 11 H 1.48498 * 109.47634 * 330.00608 * 8 6 4 12 12 C 1.52996 * 109.47166 * 119.99964 * 2 1 3 13 13 H 1.09004 * 109.59866 * 59.99893 * 12 2 1 14 14 C 1.53348 * 109.60378 * 180.32182 * 12 2 1 15 15 C 1.53028 * 108.43674 * 187.14258 * 14 12 2 16 16 C 1.50177 * 110.00540 * 311.34348 * 15 14 12 17 17 O 1.21276 * 118.24656 * 197.44664 * 16 15 14 18 18 N 1.33354 * 123.50650 * 17.46666 * 16 15 14 19 19 C 1.45750 * 124.10564 * 357.80082 * 18 16 15 20 20 H 1.09001 * 109.47192 * 59.99988 * 1 2 3 21 21 H 1.09004 * 109.47084 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.47175 * 300.00017 * 1 2 3 23 23 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 24 24 H 1.09002 * 109.67185 * 307.02063 * 14 12 2 25 25 H 1.08998 * 109.66831 * 67.55795 * 14 12 2 26 26 H 1.09000 * 109.44163 * 191.11945 * 15 14 12 27 27 H 1.09006 * 109.18190 * 71.40389 * 15 14 12 28 28 H 0.97002 * 117.94577 * 177.77880 * 18 16 15 29 29 H 1.09005 * 109.30357 * 258.73939 * 19 18 16 30 30 H 1.08999 * 109.29816 * 139.36687 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6945 -0.2426 -2.4828 7 7 0.9385 0.8267 -2.6034 8 14 2.3109 -1.1277 -4.0079 9 1 1.3307 -2.1700 -4.4055 10 1 2.4720 -0.1516 -5.1155 11 1 3.6199 -1.7650 -3.7155 12 6 2.0400 -0.7212 1.2492 13 1 1.6778 -1.7493 1.2513 14 6 3.5735 -0.7160 1.2563 15 6 4.0551 -1.5930 2.4142 16 6 3.3261 -1.2257 3.6747 17 8 3.7960 -1.5825 4.7343 18 7 2.1895 -0.5284 3.6912 19 6 1.5386 0.0019 2.4998 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 0.7011 1.1560 -3.4844 24 1 3.9461 -1.1136 0.3124 25 1 3.9362 0.3025 1.3949 26 1 5.1254 -1.4468 2.5592 27 1 3.8615 -2.6389 2.1757 28 1 1.7693 -0.3642 4.5500 29 1 1.7580 1.0661 2.4129 30 1 0.4607 -0.1346 2.5872 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261231053.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:30 Heat of formation + Delta-G solvation = -62.266414 kcal Electronic energy + Delta-G solvation = -12833.581880 eV Core-core repulsion = 10627.699316 eV Total energy + Delta-G solvation = -2205.882565 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.85863 -36.81854 -33.99811 -32.36128 -30.96464 -27.40260 -25.59621 -23.70997 -22.25900 -19.98447 -18.41822 -16.87997 -16.36607 -15.51273 -14.96677 -14.55536 -13.79229 -13.55539 -12.93305 -12.89922 -12.51574 -12.02228 -11.20896 -11.16932 -10.97513 -10.84659 -10.56725 -10.41881 -10.15853 -9.74811 -9.41001 -9.24208 -8.76716 -8.71562 -8.38064 -6.03987 -4.10198 2.97013 3.26977 3.34607 3.36663 3.69089 4.39015 5.04056 5.24746 5.34052 5.40055 5.46009 5.79937 5.94047 5.99688 6.30018 6.32826 6.62748 6.71861 6.85028 6.93344 7.08217 7.09599 7.25550 7.65329 7.68337 7.89865 8.08407 8.37506 8.53290 8.92489 9.54907 11.01915 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.055657 B = 0.009735 C = 0.008582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 502.959968 B = 2875.554324 C = 3262.049346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.053 3.947 3 H 0.029 0.971 4 C -0.511 4.511 5 H 0.058 0.942 6 C 0.061 3.939 7 N -0.890 5.890 8 Si 0.889 3.111 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.274 1.274 12 C -0.091 4.091 13 H 0.065 0.935 14 C -0.112 4.112 15 C -0.137 4.137 16 C 0.522 3.478 17 O -0.580 6.580 18 N -0.718 5.718 19 C 0.109 3.891 20 H 0.083 0.917 21 H 0.025 0.975 22 H 0.008 0.992 23 H 0.260 0.740 24 H 0.090 0.910 25 H 0.060 0.940 26 H 0.091 0.909 27 H 0.094 0.906 28 H 0.391 0.609 29 H 0.063 0.937 30 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.089 -1.277 5.865 6.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.034 3.966 3 H 0.047 0.953 4 C -0.549 4.549 5 H 0.076 0.924 6 C -0.140 4.140 7 N -0.529 5.529 8 Si 0.717 3.283 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.199 1.199 12 C -0.110 4.110 13 H 0.084 0.916 14 C -0.150 4.150 15 C -0.177 4.177 16 C 0.310 3.690 17 O -0.461 6.461 18 N -0.368 5.368 19 C -0.015 4.015 20 H 0.101 0.899 21 H 0.044 0.956 22 H 0.027 0.973 23 H 0.070 0.930 24 H 0.108 0.892 25 H 0.079 0.921 26 H 0.110 0.890 27 H 0.113 0.887 28 H 0.225 0.775 29 H 0.081 0.919 30 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.356 -1.375 6.026 6.328 hybrid contribution -0.050 -0.329 -0.673 0.751 sum 1.306 -1.704 5.354 5.768 Atomic orbital electron populations 1.21880 0.98768 0.99031 1.00216 1.18636 0.92431 0.95674 0.89890 0.95302 1.21148 1.31008 1.12358 0.90355 0.92424 1.24955 0.95103 0.94976 0.98980 1.69880 1.36727 1.22950 1.23322 0.86642 0.79250 0.79444 0.82943 1.20804 1.21320 1.19905 1.21571 0.94693 1.00075 0.94684 0.91608 1.21692 0.96382 0.99147 0.97753 1.21701 1.00522 1.02428 0.93013 1.20347 0.80522 0.76676 0.91495 1.90688 1.66554 1.55429 1.33475 1.45600 1.24955 1.55234 1.10975 1.21722 0.96957 0.98082 0.84720 0.89859 0.95570 0.97256 0.93034 0.89150 0.92149 0.89011 0.88731 0.77501 0.91905 0.90814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 8.63 37.16 0.32 -2.79 16 2 C 0.05 1.18 1.88 -91.77 -0.17 1.00 16 3 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 4 C -0.51 -12.83 7.75 -34.44 -0.27 -13.10 16 5 H 0.06 1.42 6.78 -52.49 -0.36 1.07 16 6 C 0.06 1.60 5.30 -17.82 -0.09 1.50 16 7 N -0.89 -24.28 11.31 55.43 0.63 -23.66 16 8 Si 0.89 20.39 29.54 -169.99 -5.02 15.37 16 9 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 12 C -0.09 -1.67 1.79 -90.49 -0.16 -1.83 16 13 H 0.07 1.24 8.13 -51.93 -0.42 0.81 16 14 C -0.11 -1.91 5.19 -26.54 -0.14 -2.05 16 15 C -0.14 -2.11 6.03 -28.12 -0.17 -2.28 16 16 C 0.52 8.91 7.72 -11.87 -0.09 8.82 16 17 O -0.58 -11.66 17.78 5.56 0.10 -11.56 16 18 N -0.72 -10.85 5.45 -61.39 -0.33 -11.18 16 19 C 0.11 1.69 5.86 -4.49 -0.03 1.66 16 20 H 0.08 2.08 6.06 -51.93 -0.31 1.76 16 21 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 22 H 0.01 0.16 6.66 -51.93 -0.35 -0.18 16 23 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 24 H 0.09 1.64 6.48 -51.93 -0.34 1.31 16 25 H 0.06 1.02 8.13 -51.93 -0.42 0.60 16 26 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 27 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 28 H 0.39 5.20 8.80 -40.82 -0.36 4.84 16 29 H 0.06 0.97 8.11 -51.93 -0.42 0.55 16 30 H 0.07 1.07 6.96 -51.93 -0.36 0.71 16 LS Contribution 242.53 15.07 3.65 3.65 Total: -1.00 -28.38 242.53 -5.94 -34.32 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -4.16 Total: 2.12 kcal Atomic # 6 Polarization: -8.25 SS G_CDS: -0.80 Total: -9.05 kcal Atomic # 7 Polarization: -35.13 SS G_CDS: 0.29 Total: -34.84 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: 0.10 Total: -11.56 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -28.38 -5.94 -34.32 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261231053.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.949 kcal (2) G-P(sol) polarization free energy of solvation -28.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds