Wall clock time and date at job start Mon Mar 30 2020 02:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47131 * 2 1 4 4 C 1.50702 * 109.47245 * 240.00111 * 2 1 3 5 5 H 1.08002 * 120.00299 * 240.00501 * 4 2 1 6 6 C 1.37884 * 119.99942 * 59.72060 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48501 * 109.47188 * 90.00793 * 8 6 4 10 10 H 1.48501 * 109.47085 * 210.00372 * 8 6 4 11 11 H 1.48498 * 109.47634 * 330.00608 * 8 6 4 12 12 C 1.52996 * 109.47166 * 119.99964 * 2 1 3 13 13 H 1.09004 * 109.59866 * 59.99893 * 12 2 1 14 14 C 1.53348 * 109.60378 * 180.32182 * 12 2 1 15 15 C 1.53028 * 108.43674 * 187.14258 * 14 12 2 16 16 C 1.50177 * 110.00540 * 311.34348 * 15 14 12 17 17 O 1.21276 * 118.24656 * 197.44664 * 16 15 14 18 18 N 1.33354 * 123.50650 * 17.46666 * 16 15 14 19 19 C 1.45750 * 124.10564 * 357.80082 * 18 16 15 20 20 H 1.09001 * 109.47192 * 59.99988 * 1 2 3 21 21 H 1.09004 * 109.47084 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.47175 * 300.00017 * 1 2 3 23 23 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 24 24 H 1.09002 * 109.67185 * 307.02063 * 14 12 2 25 25 H 1.08998 * 109.66831 * 67.55795 * 14 12 2 26 26 H 1.09000 * 109.44163 * 191.11945 * 15 14 12 27 27 H 1.09006 * 109.18190 * 71.40389 * 15 14 12 28 28 H 0.97002 * 117.94577 * 177.77880 * 18 16 15 29 29 H 1.09005 * 109.30357 * 258.73939 * 19 18 16 30 30 H 1.08999 * 109.29816 * 139.36687 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6945 -0.2426 -2.4828 7 7 0.9385 0.8267 -2.6034 8 14 2.3109 -1.1277 -4.0079 9 1 1.3307 -2.1700 -4.4055 10 1 2.4720 -0.1516 -5.1155 11 1 3.6199 -1.7650 -3.7155 12 6 2.0400 -0.7212 1.2492 13 1 1.6778 -1.7493 1.2513 14 6 3.5735 -0.7160 1.2563 15 6 4.0551 -1.5930 2.4142 16 6 3.3261 -1.2257 3.6747 17 8 3.7960 -1.5825 4.7343 18 7 2.1895 -0.5284 3.6912 19 6 1.5386 0.0019 2.4998 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 0.7011 1.1560 -3.4844 24 1 3.9461 -1.1136 0.3124 25 1 3.9362 0.3025 1.3949 26 1 5.1254 -1.4468 2.5592 27 1 3.8615 -2.6389 2.1757 28 1 1.7693 -0.3642 4.5500 29 1 1.7580 1.0661 2.4129 30 1 0.4607 -0.1346 2.5872 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261231053.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:30 Heat of formation + Delta-G solvation = -80.695291 kcal Electronic energy + Delta-G solvation = -12834.381016 eV Core-core repulsion = 10627.699316 eV Total energy + Delta-G solvation = -2206.681701 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.21934 -38.33894 -35.65063 -33.85543 -32.63022 -28.94098 -27.39789 -25.20713 -23.72040 -21.61256 -19.83283 -18.41988 -18.05942 -16.88196 -16.56591 -16.19661 -15.25638 -14.94359 -14.55489 -14.32643 -14.12128 -13.69391 -12.92276 -12.72238 -12.59575 -12.56379 -12.25179 -12.03528 -11.87569 -11.37344 -10.99165 -10.84969 -10.50054 -10.33662 -10.01256 -8.02092 -6.12866 1.44628 1.47731 1.55142 1.63880 2.42076 2.50008 3.27031 3.72957 3.98910 4.04720 4.10902 4.54736 4.63123 4.70058 4.89777 4.97770 5.03202 5.08416 5.32151 5.39799 5.46698 5.51024 5.72684 5.86918 6.05952 6.22146 6.38344 6.46701 6.98497 7.24223 7.54810 9.02460 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.055657 B = 0.009735 C = 0.008582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 502.959968 B = 2875.554324 C = 3262.049346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.051 3.949 3 H 0.004 0.996 4 C -0.517 4.517 5 H 0.059 0.941 6 C 0.012 3.988 7 N -0.919 5.919 8 Si 0.943 3.057 9 H -0.281 1.281 10 H -0.290 1.290 11 H -0.267 1.267 12 C -0.086 4.086 13 H 0.063 0.937 14 C -0.107 4.107 15 C -0.129 4.129 16 C 0.519 3.481 17 O -0.612 6.612 18 N -0.706 5.706 19 C 0.117 3.883 20 H 0.050 0.950 21 H 0.025 0.975 22 H 0.039 0.961 23 H 0.257 0.743 24 H 0.077 0.923 25 H 0.059 0.941 26 H 0.106 0.894 27 H 0.106 0.894 28 H 0.402 0.598 29 H 0.068 0.932 30 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.313 -1.855 6.503 6.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.032 3.968 3 H 0.023 0.977 4 C -0.555 4.555 5 H 0.077 0.923 6 C -0.187 4.187 7 N -0.559 5.559 8 Si 0.770 3.230 9 H -0.207 1.207 10 H -0.216 1.216 11 H -0.191 1.191 12 C -0.105 4.105 13 H 0.081 0.919 14 C -0.144 4.144 15 C -0.169 4.169 16 C 0.308 3.692 17 O -0.496 6.496 18 N -0.356 5.356 19 C -0.007 4.007 20 H 0.069 0.931 21 H 0.044 0.956 22 H 0.058 0.942 23 H 0.066 0.934 24 H 0.095 0.905 25 H 0.078 0.922 26 H 0.125 0.875 27 H 0.124 0.876 28 H 0.238 0.762 29 H 0.086 0.914 30 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.568 -1.951 6.669 7.124 hybrid contribution -0.138 -0.130 -0.866 0.887 sum 1.430 -2.081 5.803 6.329 Atomic orbital electron populations 1.21746 0.98448 0.98900 1.00123 1.18570 0.92698 0.94450 0.91046 0.97739 1.21551 1.30303 1.12204 0.91472 0.92260 1.25646 0.95617 0.95737 1.01657 1.70011 1.38043 1.24288 1.23551 0.85776 0.78967 0.78301 0.79909 1.20730 1.21639 1.19104 1.21393 0.95482 0.99562 0.94092 0.91859 1.21587 0.95531 0.99469 0.97859 1.21658 1.01214 1.02577 0.91402 1.20575 0.80757 0.76475 0.91422 1.90683 1.67459 1.56901 1.34545 1.45475 1.24336 1.54310 1.11436 1.21607 0.97699 0.97858 0.83531 0.93073 0.95576 0.94232 0.93362 0.90480 0.92194 0.87528 0.87607 0.76177 0.91374 0.89161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.78 8.63 71.98 0.62 -5.16 16 2 C 0.05 2.26 1.88 -11.54 -0.02 2.24 16 3 H 0.00 0.22 8.14 -2.38 -0.02 0.20 16 4 C -0.52 -25.75 7.75 25.60 0.20 -25.55 16 5 H 0.06 2.87 6.78 -2.91 -0.02 2.85 16 6 C 0.01 0.60 5.30 84.66 0.45 1.05 16 7 N -0.92 -50.63 11.31 21.45 0.24 -50.39 16 8 Si 0.94 41.68 29.54 68.60 2.03 43.70 16 9 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 10 H -0.29 -12.87 7.11 99.48 0.71 -12.17 16 11 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 12 C -0.09 -2.99 1.79 -10.71 -0.02 -3.01 16 13 H 0.06 2.24 8.13 -2.39 -0.02 2.22 16 14 C -0.11 -3.46 5.19 30.72 0.16 -3.30 16 15 C -0.13 -3.68 6.03 29.69 0.18 -3.50 16 16 C 0.52 16.53 7.72 87.71 0.68 17.21 16 17 O -0.61 -23.43 17.78 -3.02 -0.05 -23.49 16 18 N -0.71 -19.44 5.45 -467.33 -2.55 -21.98 16 19 C 0.12 3.30 5.86 86.49 0.51 3.81 16 20 H 0.05 2.55 6.06 -2.39 -0.01 2.53 16 21 H 0.03 1.08 8.14 -2.38 -0.02 1.06 16 22 H 0.04 1.41 6.66 -2.39 -0.02 1.40 16 23 H 0.26 13.69 8.31 -92.70 -0.77 12.92 16 24 H 0.08 2.71 6.48 -2.39 -0.02 2.69 16 25 H 0.06 1.93 8.13 -2.39 -0.02 1.91 16 26 H 0.11 2.76 8.14 -2.39 -0.02 2.74 16 27 H 0.11 2.81 8.14 -2.38 -0.02 2.79 16 28 H 0.40 9.57 8.80 -92.71 -0.82 8.76 16 29 H 0.07 1.92 8.11 -2.38 -0.02 1.90 16 30 H 0.09 2.31 6.96 -2.39 -0.02 2.29 16 Total: -1.00 -59.24 242.53 2.74 -56.50 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: 0.32 Total: 11.88 kcal Atomic # 6 Polarization: -18.97 SS G_CDS: 2.75 Total: -16.22 kcal Atomic # 7 Polarization: -70.07 SS G_CDS: -2.30 Total: -72.37 kcal Atomic # 8 Polarization: -23.43 SS G_CDS: -0.05 Total: -23.49 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 2.03 Total: 43.70 kcal Total: -59.24 2.74 -56.50 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261231053.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.190 kcal (2) G-P(sol) polarization free energy of solvation -59.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds